Wall clock time and date at job start Mon Mar 30 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47307 * 2 1 4 4 C 1.50692 * 109.46912 * 239.99633 * 2 1 3 5 5 H 1.08001 * 120.00309 * 239.99977 * 4 2 1 6 6 C 1.37886 * 120.00252 * 60.00519 * 4 2 1 7 7 N 1.31513 * 119.99191 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47236 * 60.00004 * 8 6 4 10 10 H 1.48503 * 109.47056 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47454 * 300.00018 * 8 6 4 12 12 N 1.46907 * 109.46894 * 120.00274 * 2 1 3 13 13 C 1.48523 * 111.00243 * 62.18427 * 12 2 1 14 14 C 1.54160 * 111.93997 * 192.47517 * 13 12 2 15 15 O 1.39990 * 113.16719 * 318.77243 * 14 13 12 16 16 C 1.44540 * 112.89420 * 94.45891 * 15 14 13 17 17 H 1.08993 * 109.10401 * 40.92508 * 16 15 14 18 18 C 1.53009 * 109.10065 * 160.02589 * 16 15 14 19 19 F 1.39895 * 109.47106 * 60.00283 * 18 16 15 20 20 F 1.39900 * 109.46713 * 180.02562 * 18 16 15 21 21 F 1.39897 * 109.47323 * 299.99845 * 18 16 15 22 22 C 1.46279 * 111.34424 * 280.44227 * 16 15 14 23 23 C 1.44067 * 110.99591 * 294.06327 * 12 2 1 24 24 H 1.08999 * 109.46871 * 53.18331 * 1 2 3 25 25 H 1.09005 * 109.46775 * 293.18577 * 1 2 3 26 26 H 1.08997 * 109.47203 * 173.18800 * 1 2 3 27 27 H 0.97006 * 119.99828 * 179.97438 * 7 6 4 28 28 H 1.09007 * 108.98478 * 313.10762 * 13 12 2 29 29 H 1.09001 * 108.98574 * 71.83726 * 13 12 2 30 30 H 1.08999 * 108.74832 * 79.72438 * 14 13 12 31 31 H 1.09002 * 108.74387 * 197.94646 * 14 13 12 32 32 H 1.09006 * 108.97153 * 180.32105 * 22 16 15 33 33 H 1.09001 * 108.97446 * 299.00491 * 22 16 15 34 34 H 1.09002 * 109.70867 * 339.37626 * 23 12 2 35 35 H 1.08995 * 109.70792 * 99.99804 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6033 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1192 -4.0077 12 7 2.0197 -0.6926 1.1995 13 6 1.5871 -2.1134 1.2076 14 6 1.8163 -2.7774 2.5799 15 8 3.0367 -2.4222 3.1666 16 6 2.9181 -1.3088 4.0807 17 1 2.0066 -1.4241 4.6670 18 6 4.1229 -1.3047 5.0239 19 9 5.2991 -1.1774 4.2773 20 9 4.0155 -0.2298 5.9128 21 9 4.1552 -2.5035 5.7443 22 6 2.8683 -0.0345 3.3640 23 6 1.6747 0.0362 2.3934 24 1 -0.3633 0.6158 -0.8227 25 1 -0.3633 0.4046 0.9447 26 1 -0.3633 -1.0204 -0.1219 27 1 0.7088 1.1613 -3.4844 28 1 0.5260 -2.1624 0.9627 29 1 2.1498 -2.6598 0.4507 30 1 1.0075 -2.4856 3.2498 31 1 1.7924 -3.8598 2.4536 32 1 2.7849 0.7762 4.0879 33 1 3.7921 0.0907 2.7991 34 1 1.4667 1.0762 2.1419 35 1 0.7967 -0.4130 2.8574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686834565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:03 Heat of formation + Delta-G solvation = -185.605542 kcal Electronic energy + Delta-G solvation = -21924.950236 eV Core-core repulsion = 18122.508261 eV Total energy + Delta-G solvation = -3802.441975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.07255 -47.61509 -47.47999 -39.55982 -36.52486 -33.57644 -32.62996 -29.67374 -28.21396 -26.47236 -25.27957 -23.65663 -21.75014 -21.40997 -19.17207 -18.54911 -18.20545 -17.98487 -16.62426 -15.98961 -15.64639 -14.80392 -14.55704 -14.47772 -14.33628 -14.06040 -13.95520 -13.68686 -13.66726 -13.48240 -13.10723 -12.89165 -12.33767 -12.21707 -11.74883 -11.39565 -11.10686 -10.91279 -10.87878 -10.68182 -10.52612 -10.46193 -10.06638 -9.82527 -9.44207 -8.89658 -8.42071 -7.12270 -6.03893 -4.07039 2.57402 3.31869 3.36212 3.39735 3.42780 3.79960 4.04928 4.39673 4.52175 4.75347 4.92243 5.06313 5.27656 5.28643 5.45236 5.58048 5.59775 5.75561 5.81442 6.13546 6.28589 6.41866 6.60270 6.70546 6.80822 7.02886 7.11838 7.47409 7.65459 7.82938 8.08660 8.30101 8.60718 8.98745 9.58462 11.03770 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.005164 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.350277 B = 5421.262276 C = 5570.438013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.216 3.784 3 H 0.041 0.959 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.289 1.289 11 H -0.276 1.276 12 N -0.542 5.542 13 C 0.042 3.958 14 C 0.061 3.939 15 O -0.343 6.343 16 C 0.063 3.937 17 H 0.093 0.907 18 C 0.459 3.541 19 F -0.171 7.171 20 F -0.180 7.180 21 F -0.182 7.182 22 C -0.162 4.162 23 C 0.075 3.925 24 H 0.084 0.916 25 H 0.006 0.994 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -3.676 14.152 14.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.110 3.890 3 H 0.059 0.941 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.266 5.266 13 C -0.086 4.086 14 C -0.017 4.017 15 O -0.262 6.262 16 C 0.003 3.997 17 H 0.110 0.890 18 C 0.404 3.596 19 F -0.152 7.152 20 F -0.162 7.162 21 F -0.163 7.163 22 C -0.200 4.200 23 C -0.055 4.055 24 H 0.103 0.897 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.065 0.935 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.560 -3.665 13.973 14.530 hybrid contribution -0.662 -0.282 -0.671 0.984 sum 0.898 -3.947 13.302 13.904 Atomic orbital electron populations 1.22415 1.00875 1.00293 0.99223 1.19367 0.89530 0.94316 0.85797 0.94085 1.21105 1.30728 1.12631 0.89671 0.91897 1.24927 0.95161 0.95098 0.99028 1.69885 1.37012 1.23022 1.23546 0.86582 0.79306 0.79566 0.82080 1.20390 1.21437 1.20199 1.60870 1.62372 1.00821 1.02543 1.22990 0.99389 0.90293 0.95882 1.22601 0.84886 0.99621 0.94576 1.87811 1.32272 1.47164 1.58915 1.22129 0.94184 0.91993 0.91345 0.88978 1.20450 0.85588 0.73282 0.80250 1.93211 1.50514 1.95446 1.76067 1.93174 1.96244 1.56465 1.70273 1.93176 1.96835 1.46726 1.79600 1.21383 1.04199 0.94553 0.99869 1.21453 0.92979 0.99463 0.91585 0.89682 0.97545 0.94963 0.92963 0.93536 0.89856 0.93817 0.89224 0.90357 0.88478 0.90589 0.95395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.86 8.30 37.16 0.31 -3.55 16 2 C 0.22 5.17 2.15 -68.86 -0.15 5.02 16 3 H 0.04 1.09 7.91 -51.93 -0.41 0.68 16 4 C -0.50 -13.36 8.03 -34.44 -0.28 -13.64 16 5 H 0.06 1.69 6.59 -52.49 -0.35 1.34 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -24.97 11.40 55.43 0.63 -24.34 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.54 -10.95 4.12 -227.55 -0.94 -11.89 16 13 C 0.04 0.77 5.17 -2.32 -0.01 0.76 16 14 C 0.06 0.88 6.06 37.76 0.23 1.11 16 15 O -0.34 -5.47 10.03 -32.90 -0.33 -5.80 16 16 C 0.06 0.85 2.14 -29.92 -0.06 0.79 16 17 H 0.09 1.04 7.47 -51.93 -0.39 0.65 16 18 C 0.46 6.19 2.82 37.16 0.10 6.29 16 19 F -0.17 -2.62 16.65 2.25 0.04 -2.58 16 20 F -0.18 -2.25 16.57 2.25 0.04 -2.21 16 21 F -0.18 -2.48 17.25 2.25 0.04 -2.44 16 22 C -0.16 -2.34 4.71 -29.40 -0.14 -2.48 16 23 C 0.08 1.25 4.26 -4.81 -0.02 1.23 16 24 H 0.08 2.17 6.28 -51.93 -0.33 1.84 16 25 H 0.01 0.11 7.11 -51.93 -0.37 -0.25 16 26 H 0.03 0.72 6.53 -51.93 -0.34 0.38 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 28 H 0.05 0.86 5.94 -51.92 -0.31 0.55 16 29 H 0.08 1.67 6.80 -51.93 -0.35 1.31 16 30 H 0.04 0.55 6.57 -51.93 -0.34 0.21 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.95 7.55 -51.93 -0.39 0.56 16 33 H 0.10 1.62 7.62 -51.93 -0.40 1.23 16 34 H 0.08 1.30 7.35 -51.93 -0.38 0.92 16 35 H 0.03 0.43 6.89 -51.93 -0.36 0.07 16 LS Contribution 282.90 15.07 4.26 4.26 Total: -1.00 -27.93 282.90 -5.66 -33.58 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.27 Total: -1.72 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -0.11 Total: -2.97 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.31 Total: -36.23 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.33 Total: -5.80 kcal Atomic # 9 Polarization: -7.35 SS G_CDS: 0.11 Total: -7.23 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.93 -5.66 -33.58 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686834565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.022 kcal (2) G-P(sol) polarization free energy of solvation -27.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds