Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.47307 * 2 1 4 4 C 1.50692 * 109.46912 * 239.99633 * 2 1 3 5 5 H 1.08001 * 120.00309 * 239.99977 * 4 2 1 6 6 C 1.37886 * 120.00252 * 60.00519 * 4 2 1 7 7 N 1.31513 * 119.99191 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00256 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47236 * 60.00004 * 8 6 4 10 10 H 1.48503 * 109.47056 * 179.97438 * 8 6 4 11 11 H 1.48495 * 109.47454 * 300.00018 * 8 6 4 12 12 N 1.46907 * 109.46894 * 120.00274 * 2 1 3 13 13 C 1.48523 * 111.00243 * 62.18427 * 12 2 1 14 14 C 1.54160 * 111.93997 * 192.47517 * 13 12 2 15 15 O 1.39990 * 113.16719 * 318.77243 * 14 13 12 16 16 C 1.44540 * 112.89420 * 94.45891 * 15 14 13 17 17 H 1.08993 * 109.10401 * 40.92508 * 16 15 14 18 18 C 1.53009 * 109.10065 * 160.02589 * 16 15 14 19 19 F 1.39895 * 109.47106 * 60.00283 * 18 16 15 20 20 F 1.39900 * 109.46713 * 180.02562 * 18 16 15 21 21 F 1.39897 * 109.47323 * 299.99845 * 18 16 15 22 22 C 1.46279 * 111.34424 * 280.44227 * 16 15 14 23 23 C 1.44067 * 110.99591 * 294.06327 * 12 2 1 24 24 H 1.08999 * 109.46871 * 53.18331 * 1 2 3 25 25 H 1.09005 * 109.46775 * 293.18577 * 1 2 3 26 26 H 1.08997 * 109.47203 * 173.18800 * 1 2 3 27 27 H 0.97006 * 119.99828 * 179.97438 * 7 6 4 28 28 H 1.09007 * 108.98478 * 313.10762 * 13 12 2 29 29 H 1.09001 * 108.98574 * 71.83726 * 13 12 2 30 30 H 1.08999 * 108.74832 * 79.72438 * 14 13 12 31 31 H 1.09002 * 108.74387 * 197.94646 * 14 13 12 32 32 H 1.09006 * 108.97153 * 180.32105 * 22 16 15 33 33 H 1.09001 * 108.97446 * 299.00491 * 22 16 15 34 34 H 1.09002 * 109.70867 * 339.37626 * 23 12 2 35 35 H 1.08995 * 109.70792 * 99.99804 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9429 0.8296 -2.6033 8 14 2.3224 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2204 11 1 3.8074 -1.1192 -4.0077 12 7 2.0197 -0.6926 1.1995 13 6 1.5871 -2.1134 1.2076 14 6 1.8163 -2.7774 2.5799 15 8 3.0367 -2.4222 3.1666 16 6 2.9181 -1.3088 4.0807 17 1 2.0066 -1.4241 4.6670 18 6 4.1229 -1.3047 5.0239 19 9 5.2991 -1.1774 4.2773 20 9 4.0155 -0.2298 5.9128 21 9 4.1552 -2.5035 5.7443 22 6 2.8683 -0.0345 3.3640 23 6 1.6747 0.0362 2.3934 24 1 -0.3633 0.6158 -0.8227 25 1 -0.3633 0.4046 0.9447 26 1 -0.3633 -1.0204 -0.1219 27 1 0.7088 1.1613 -3.4844 28 1 0.5260 -2.1624 0.9627 29 1 2.1498 -2.6598 0.4507 30 1 1.0075 -2.4856 3.2498 31 1 1.7924 -3.8598 2.4536 32 1 2.7849 0.7762 4.0879 33 1 3.7921 0.0907 2.7991 34 1 1.4667 1.0762 2.1419 35 1 0.7967 -0.4130 2.8574 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686834565.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = -203.462906 kcal Electronic energy + Delta-G solvation = -21925.724589 eV Core-core repulsion = 18122.508261 eV Total energy + Delta-G solvation = -3803.216328 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -51.13152 -48.64274 -48.58485 -40.82560 -38.06405 -35.00965 -34.31373 -31.37312 -29.48276 -27.92550 -27.24671 -24.87360 -23.29498 -22.62726 -20.74396 -19.64242 -19.30764 -19.09468 -18.23468 -17.52466 -17.14973 -16.41562 -15.93723 -15.64424 -15.47493 -15.26258 -15.05324 -15.02933 -14.76674 -14.75114 -14.58842 -14.38895 -13.82318 -13.55260 -13.46489 -12.99709 -12.78626 -12.69205 -12.41627 -12.21851 -12.13066 -11.91848 -11.62713 -11.51110 -10.88026 -10.68446 -10.48030 -8.69799 -8.10355 -6.19627 1.42777 1.44166 1.51248 1.51771 2.35345 2.43838 2.73518 3.00220 3.19627 3.30857 3.49099 3.85879 3.90581 4.14990 4.17863 4.34076 4.43534 4.46096 4.70865 4.76067 4.80426 4.87809 4.98577 5.09405 5.20004 5.26177 5.59316 5.75136 5.81483 6.01717 6.24041 6.49368 6.90952 6.94762 7.49861 8.95873 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.032842 B = 0.005164 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.350277 B = 5421.262276 C = 5570.438013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.220 3.780 3 H 0.007 0.993 4 C -0.516 4.516 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.277 1.277 12 N -0.556 5.556 13 C 0.042 3.958 14 C 0.066 3.934 15 O -0.364 6.364 16 C 0.059 3.941 17 H 0.128 0.872 18 C 0.463 3.537 19 F -0.186 7.186 20 F -0.172 7.172 21 F -0.181 7.181 22 C -0.153 4.153 23 C 0.072 3.928 24 H 0.055 0.945 25 H 0.031 0.969 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.499 -4.566 15.682 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.113 3.887 3 H 0.024 0.976 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.560 5.560 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.280 5.280 13 C -0.086 4.086 14 C -0.011 4.011 15 O -0.282 6.282 16 C 0.001 3.999 17 H 0.146 0.854 18 C 0.409 3.591 19 F -0.167 7.167 20 F -0.154 7.154 21 F -0.163 7.163 22 C -0.191 4.191 23 C -0.057 4.057 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.112 -4.563 15.526 16.220 hybrid contribution -0.497 0.022 -1.094 1.202 sum 0.615 -4.541 14.431 15.141 Atomic orbital electron populations 1.22177 0.99970 0.99706 0.99334 1.19082 0.90050 0.92572 0.86948 0.97556 1.21391 1.30495 1.12432 0.91111 0.92818 1.25636 0.95452 0.95795 1.01670 1.70009 1.37928 1.24099 1.23966 0.85674 0.78555 0.78815 0.78943 1.19620 1.21051 1.20258 1.60727 1.62954 1.01872 1.02493 1.23007 0.98533 0.88993 0.98038 1.22595 0.85432 1.00435 0.92634 1.87802 1.33236 1.47802 1.59386 1.22296 0.95605 0.90765 0.91265 0.85427 1.20407 0.85029 0.73452 0.80252 1.93187 1.51467 1.95534 1.76528 1.93192 1.96152 1.56066 1.69966 1.93179 1.96791 1.46753 1.79529 1.21266 1.01744 0.96372 0.99710 1.21536 0.94865 0.98672 0.90629 0.92620 0.94983 0.94988 0.93063 0.93858 0.92632 0.90899 0.86989 0.87540 0.91214 0.91481 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.96 8.30 71.98 0.60 -6.37 16 2 C 0.22 10.75 2.15 44.17 0.09 10.85 16 3 H 0.01 0.36 7.91 -2.39 -0.02 0.34 16 4 C -0.52 -27.97 8.03 25.60 0.21 -27.76 16 5 H 0.05 2.95 6.59 -2.91 -0.02 2.93 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.26 11.40 21.45 0.24 -52.02 16 8 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 N -0.56 -22.27 4.12 -873.82 -3.60 -25.87 16 13 C 0.04 1.48 5.17 86.38 0.45 1.93 16 14 C 0.07 1.72 6.06 72.37 0.44 2.16 16 15 O -0.36 -10.66 10.03 -140.64 -1.41 -12.07 16 16 C 0.06 1.43 2.14 28.53 0.06 1.49 16 17 H 0.13 2.22 7.47 -2.39 -0.02 2.21 16 18 C 0.46 11.35 2.82 71.99 0.20 11.55 16 19 F -0.19 -5.46 16.65 44.97 0.75 -4.71 16 20 F -0.17 -3.82 16.57 44.97 0.75 -3.07 16 21 F -0.18 -4.46 17.25 44.97 0.78 -3.69 16 22 C -0.15 -4.09 4.71 28.87 0.14 -3.95 16 23 C 0.07 2.27 4.26 87.17 0.37 2.64 16 24 H 0.05 2.88 6.28 -2.39 -0.02 2.86 16 25 H 0.03 1.25 7.11 -2.38 -0.02 1.23 16 26 H 0.03 1.42 6.53 -2.39 -0.02 1.40 16 27 H 0.26 14.18 8.31 -92.70 -0.77 13.41 16 28 H 0.04 1.55 5.94 -2.38 -0.01 1.54 16 29 H 0.06 2.24 6.80 -2.39 -0.02 2.22 16 30 H 0.07 1.49 6.57 -2.39 -0.02 1.48 16 31 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.11 2.25 7.55 -2.38 -0.02 2.23 16 33 H 0.07 2.28 7.62 -2.39 -0.02 2.26 16 34 H 0.07 2.22 7.35 -2.39 -0.02 2.20 16 35 H 0.05 1.39 6.89 -2.39 -0.02 1.37 16 Total: -1.00 -60.86 282.90 3.65 -57.21 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: 1.11 Total: 4.77 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: 3.00 Total: -6.30 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -3.35 Total: -77.89 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: -1.41 Total: -12.07 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 2.27 Total: -11.47 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -60.86 3.65 -57.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686834565.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.248 kcal (2) G-P(sol) polarization free energy of solvation -60.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds