Wall clock time and date at job start Mon Mar 30 2020 05:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.27403 * 2 1 4 4 C 1.54938 * 110.31008 * 237.80283 * 2 1 3 5 5 C 1.55535 * 100.95076 * 204.62093 * 4 2 1 6 6 C 1.54374 * 102.14597 * 34.14972 * 5 4 2 7 7 H 1.09002 * 109.83067 * 98.17767 * 6 5 4 8 8 C 1.53008 * 109.82791 * 219.05430 * 6 5 4 9 9 N 1.46504 * 109.46820 * 184.81337 * 8 6 5 10 10 C 1.36932 * 120.00225 * 269.99957 * 9 8 6 11 11 H 1.08001 * 119.99513 * 142.32358 * 10 9 8 12 12 C 1.38802 * 120.00296 * 322.32890 * 10 9 8 13 13 N 1.31625 * 119.99899 * 339.22072 * 12 10 9 14 14 Si 1.86803 * 120.00399 * 159.22320 * 12 10 9 15 15 H 1.48501 * 109.46733 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46964 * 119.99530 * 14 12 10 17 17 H 1.48495 * 109.47106 * 239.99802 * 14 12 10 18 18 C 1.46505 * 119.99699 * 90.00506 * 9 8 6 19 19 C 1.52996 * 109.47185 * 95.12410 * 18 9 8 20 20 F 1.39898 * 109.47101 * 60.00131 * 19 18 9 21 21 F 1.39903 * 109.47098 * 179.97438 * 19 18 9 22 22 F 1.39906 * 109.47456 * 300.00198 * 19 18 9 23 23 O 1.43232 * 107.67109 * 338.61674 * 6 5 4 24 24 H 1.09000 * 109.46749 * 299.36768 * 1 2 3 25 25 H 1.08997 * 109.46756 * 59.36128 * 1 2 3 26 26 H 1.08998 * 109.47158 * 179.36552 * 1 2 3 27 27 H 1.09005 * 111.12526 * 322.56103 * 4 2 1 28 28 H 1.08998 * 111.13314 * 86.67652 * 4 2 1 29 29 H 1.08999 * 110.88078 * 276.00004 * 5 4 2 30 30 H 1.09003 * 110.91152 * 152.31677 * 5 4 2 31 31 H 1.08994 * 109.47347 * 304.81667 * 8 6 5 32 32 H 1.08999 * 109.46589 * 64.81974 * 8 6 5 33 33 H 0.97000 * 119.99815 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47339 * 215.12889 * 18 9 8 35 35 H 1.09004 * 109.47185 * 335.12509 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0678 -0.7742 -1.2296 5 6 3.4723 -1.2035 -0.7174 6 6 3.2112 -1.4411 0.7855 7 1 3.0624 -2.5049 0.9713 8 6 4.3987 -0.9324 1.6053 9 7 4.1951 -1.2646 3.0176 10 6 3.5441 -0.3852 3.8409 11 1 2.8731 -0.7542 4.6025 12 6 3.7463 0.9804 3.6965 13 7 4.8245 1.4251 3.0863 14 14 2.4886 2.1872 4.3683 15 1 1.3751 1.4386 5.0046 16 1 3.1347 3.0657 5.3762 17 1 1.9559 3.0165 3.2576 18 6 4.6882 -2.5377 3.5491 19 6 6.0674 -2.3281 4.1775 20 9 5.9698 -1.3957 5.2159 21 9 6.5380 -3.5437 4.6855 22 9 6.9552 -1.8530 3.2061 23 8 2.0286 -0.7157 1.1414 24 1 -0.3633 0.5040 0.8956 25 1 -0.3633 0.5237 -0.8842 26 1 -0.3633 -1.0276 -0.0114 27 1 1.4471 -1.6429 -1.4492 28 1 2.1490 -0.1226 -2.0996 29 1 4.1998 -0.4050 -0.8632 30 1 3.8000 -2.1220 -1.2043 31 1 5.3146 -1.4041 1.2495 32 1 4.4801 0.1488 1.4945 33 1 4.9660 2.3795 2.9858 34 1 3.9966 -2.9078 4.3058 35 1 4.7642 -3.2642 2.7400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687817222.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:45 Heat of formation + Delta-G solvation = -189.185558 kcal Electronic energy + Delta-G solvation = -22154.355868 eV Core-core repulsion = 18351.758652 eV Total energy + Delta-G solvation = -3802.597216 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.87266 -46.49072 -46.25802 -38.95597 -35.67001 -31.76824 -31.61861 -31.30532 -28.29016 -26.74364 -24.12723 -22.85457 -21.11438 -20.92346 -19.78061 -17.56297 -17.28938 -16.82851 -16.25121 -16.08432 -15.21230 -14.54095 -13.86736 -13.75611 -13.64482 -13.29308 -13.22085 -12.98233 -12.84455 -12.66567 -12.54718 -12.47455 -12.19875 -11.82833 -11.68723 -11.37469 -11.09415 -10.93365 -10.77773 -10.63313 -10.55875 -10.35211 -10.13026 -9.98781 -9.84986 -8.74008 -8.50298 -6.72823 -5.82085 -3.41188 3.39316 3.47154 3.51801 3.98244 4.36152 4.50893 4.93628 5.04451 5.09789 5.11809 5.22211 5.32227 5.48688 5.62264 5.66492 5.73714 5.82183 5.91861 6.01102 6.04113 6.14832 6.18484 6.31467 6.37764 6.45637 6.52591 6.61681 6.78479 7.59566 7.80791 7.94184 8.43543 9.07380 9.69538 10.21162 11.20090 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.008841 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.028997 B = 3166.181432 C = 4239.049308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.071 3.929 3 H 0.062 0.938 4 C -0.150 4.150 5 C -0.151 4.151 6 C 0.067 3.933 7 H 0.059 0.941 8 C 0.132 3.868 9 N -0.555 5.555 10 C -0.253 4.253 11 H 0.065 0.935 12 C 0.028 3.972 13 N -0.883 5.883 14 Si 0.902 3.098 15 H -0.274 1.274 16 H -0.292 1.292 17 H -0.288 1.288 18 C 0.106 3.894 19 C 0.409 3.591 20 F -0.177 7.177 21 F -0.219 7.219 22 F -0.194 7.194 23 O -0.343 6.343 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.106 0.894 33 H 0.254 0.746 34 H 0.083 0.917 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.206 -5.679 -6.973 9.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.080 0.920 4 C -0.188 4.188 5 C -0.189 4.189 6 C 0.007 3.993 7 H 0.077 0.923 8 C 0.006 3.994 9 N -0.270 5.270 10 C -0.382 4.382 11 H 0.082 0.918 12 C -0.173 4.173 13 N -0.524 5.524 14 Si 0.731 3.269 15 H -0.199 1.199 16 H -0.219 1.219 17 H -0.214 1.214 18 C -0.026 4.026 19 C 0.351 3.649 20 F -0.158 7.158 21 F -0.201 7.201 22 F -0.175 7.175 23 O -0.262 6.262 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.239 -5.463 -6.793 9.300 hybrid contribution -0.059 0.754 0.199 0.782 sum -3.298 -4.709 -6.594 8.748 Atomic orbital electron populations 1.21844 0.94823 1.02052 1.01712 1.22855 0.94050 0.96068 0.85756 0.92007 1.23312 0.96745 1.00320 0.98431 1.23180 0.97259 1.01877 0.96612 1.23497 0.88309 0.95262 0.92207 0.92335 1.21538 0.91642 1.04179 0.82062 1.43818 1.61986 1.16151 1.05091 1.18933 1.18042 0.86281 1.14950 0.91783 1.25098 0.95657 0.97837 0.98700 1.70000 1.23935 1.13339 1.45105 0.86252 0.81511 0.80964 0.78125 1.19908 1.21899 1.21427 1.22450 0.88274 0.93089 0.98751 1.23342 0.91719 0.72774 0.77081 1.93152 1.96415 1.66513 1.59727 1.93056 1.91211 1.47119 1.88722 1.93078 1.72194 1.88844 1.63403 1.88649 1.41638 1.64296 1.31585 0.92039 0.92205 0.92427 0.91072 0.90971 0.90549 0.91051 0.94197 0.87650 0.93555 0.89911 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.62 37.16 0.36 -1.73 16 2 C 0.07 1.19 4.08 -25.71 -0.10 1.09 16 3 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 4 C -0.15 -2.06 6.58 -24.36 -0.16 -2.22 16 5 C -0.15 -2.28 6.56 -24.66 -0.16 -2.44 16 6 C 0.07 1.27 3.76 -26.01 -0.10 1.17 16 7 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 8 C 0.13 2.93 4.75 -4.04 -0.02 2.91 16 9 N -0.55 -13.24 2.34 -173.24 -0.40 -13.65 16 10 C -0.25 -6.74 8.32 -15.06 -0.13 -6.86 16 11 H 0.06 1.74 7.91 -52.49 -0.42 1.32 16 12 C 0.03 0.77 4.97 -17.43 -0.09 0.68 16 13 N -0.88 -25.01 11.44 55.49 0.63 -24.37 16 14 Si 0.90 21.96 29.60 -169.99 -5.03 16.93 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 18 C 0.11 2.16 5.71 -4.04 -0.02 2.14 16 19 C 0.41 8.84 3.29 37.16 0.12 8.96 16 20 F -0.18 -4.34 16.54 2.25 0.04 -4.30 16 21 F -0.22 -4.26 17.32 2.25 0.04 -4.22 16 22 F -0.19 -4.43 16.83 2.25 0.04 -4.39 16 23 O -0.34 -7.17 10.27 -35.23 -0.36 -7.53 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.89 8.06 -51.93 -0.42 0.48 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 1.18 7.85 -51.93 -0.41 0.78 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.04 0.85 7.75 -51.93 -0.40 0.44 16 32 H 0.11 2.72 5.50 -51.93 -0.29 2.43 16 33 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.08 1.59 8.08 -51.93 -0.42 1.17 16 35 H 0.08 1.33 8.03 -51.93 -0.42 0.91 16 LS Contribution 301.78 15.07 4.55 4.55 Total: -1.00 -29.59 301.78 -5.66 -35.25 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -4.86 Total: -1.96 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.30 Total: 3.70 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.23 Total: -38.02 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.36 Total: -7.53 kcal Atomic # 9 Polarization: -13.03 SS G_CDS: 0.11 Total: -12.91 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.59 -5.66 -35.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687817222.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.933 kcal (2) G-P(sol) polarization free energy of solvation -29.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds