Wall clock time and date at job start Mon Mar 30 2020 05:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.27403 * 2 1 4 4 C 1.54938 * 110.31008 * 237.80283 * 2 1 3 5 5 C 1.55535 * 100.95076 * 204.62093 * 4 2 1 6 6 C 1.54374 * 102.14597 * 34.14972 * 5 4 2 7 7 H 1.09002 * 109.83067 * 98.17767 * 6 5 4 8 8 C 1.53008 * 109.82791 * 219.05430 * 6 5 4 9 9 N 1.46504 * 109.46820 * 184.81337 * 8 6 5 10 10 C 1.36932 * 120.00225 * 269.99957 * 9 8 6 11 11 H 1.08001 * 119.99513 * 142.32358 * 10 9 8 12 12 C 1.38802 * 120.00296 * 322.32890 * 10 9 8 13 13 N 1.31625 * 119.99899 * 339.22072 * 12 10 9 14 14 Si 1.86803 * 120.00399 * 159.22320 * 12 10 9 15 15 H 1.48501 * 109.46733 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.46964 * 119.99530 * 14 12 10 17 17 H 1.48495 * 109.47106 * 239.99802 * 14 12 10 18 18 C 1.46505 * 119.99699 * 90.00506 * 9 8 6 19 19 C 1.52996 * 109.47185 * 95.12410 * 18 9 8 20 20 F 1.39898 * 109.47101 * 60.00131 * 19 18 9 21 21 F 1.39903 * 109.47098 * 179.97438 * 19 18 9 22 22 F 1.39906 * 109.47456 * 300.00198 * 19 18 9 23 23 O 1.43232 * 107.67109 * 338.61674 * 6 5 4 24 24 H 1.09000 * 109.46749 * 299.36768 * 1 2 3 25 25 H 1.08997 * 109.46756 * 59.36128 * 1 2 3 26 26 H 1.08998 * 109.47158 * 179.36552 * 1 2 3 27 27 H 1.09005 * 111.12526 * 322.56103 * 4 2 1 28 28 H 1.08998 * 111.13314 * 86.67652 * 4 2 1 29 29 H 1.08999 * 110.88078 * 276.00004 * 5 4 2 30 30 H 1.09003 * 110.91152 * 152.31677 * 5 4 2 31 31 H 1.08994 * 109.47347 * 304.81667 * 8 6 5 32 32 H 1.08999 * 109.46589 * 64.81974 * 8 6 5 33 33 H 0.97000 * 119.99815 * 180.02562 * 13 12 10 34 34 H 1.08998 * 109.47339 * 215.12889 * 18 9 8 35 35 H 1.09004 * 109.47185 * 335.12509 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9078 1.0225 0.0000 4 6 2.0678 -0.7742 -1.2296 5 6 3.4723 -1.2035 -0.7174 6 6 3.2112 -1.4411 0.7855 7 1 3.0624 -2.5049 0.9713 8 6 4.3987 -0.9324 1.6053 9 7 4.1951 -1.2646 3.0176 10 6 3.5441 -0.3852 3.8409 11 1 2.8731 -0.7542 4.6025 12 6 3.7463 0.9804 3.6965 13 7 4.8245 1.4251 3.0863 14 14 2.4886 2.1872 4.3683 15 1 1.3751 1.4386 5.0046 16 1 3.1347 3.0657 5.3762 17 1 1.9559 3.0165 3.2576 18 6 4.6882 -2.5377 3.5491 19 6 6.0674 -2.3281 4.1775 20 9 5.9698 -1.3957 5.2159 21 9 6.5380 -3.5437 4.6855 22 9 6.9552 -1.8530 3.2061 23 8 2.0286 -0.7157 1.1414 24 1 -0.3633 0.5040 0.8956 25 1 -0.3633 0.5237 -0.8842 26 1 -0.3633 -1.0276 -0.0114 27 1 1.4471 -1.6429 -1.4492 28 1 2.1490 -0.1226 -2.0996 29 1 4.1998 -0.4050 -0.8632 30 1 3.8000 -2.1220 -1.2043 31 1 5.3146 -1.4041 1.2495 32 1 4.4801 0.1488 1.4945 33 1 4.9660 2.3795 2.9858 34 1 3.9966 -2.9078 4.3058 35 1 4.7642 -3.2642 2.7400 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687817222.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:50:44 Heat of formation + Delta-G solvation = -206.230196 kcal Electronic energy + Delta-G solvation = -22155.094979 eV Core-core repulsion = 18351.758652 eV Total energy + Delta-G solvation = -3803.336327 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.63340 -48.20786 -48.10649 -40.34544 -37.45316 -33.62378 -32.98474 -32.75067 -29.88877 -28.44108 -25.80110 -24.46692 -22.78113 -22.19503 -21.27809 -19.35816 -19.05251 -18.65413 -17.93259 -17.58337 -16.69299 -16.37578 -15.58656 -15.53302 -15.07112 -15.01346 -14.93266 -14.62007 -14.43790 -14.36774 -14.27616 -14.01122 -13.52040 -13.36406 -13.20742 -12.89772 -12.80417 -12.63341 -12.40946 -12.23368 -12.09171 -11.92737 -11.61186 -11.55791 -11.50416 -10.54057 -10.23139 -8.66146 -7.85134 -5.47005 1.42969 1.46525 1.56101 2.25707 2.48776 3.06777 3.25281 3.34604 3.48917 3.52809 3.76228 3.95891 3.98954 4.16410 4.34938 4.44988 4.54334 4.59837 4.70775 4.73860 4.81796 4.93509 4.95003 4.97065 5.15539 5.21145 5.32765 5.41119 5.70148 5.79793 6.39331 6.59605 7.11242 7.73187 8.22379 9.13157 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.017290 B = 0.008841 C = 0.006604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.028997 B = 3166.181432 C = 4239.049308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 H 0.037 0.963 4 C -0.135 4.135 5 C -0.146 4.146 6 C 0.068 3.932 7 H 0.069 0.931 8 C 0.133 3.867 9 N -0.570 5.570 10 C -0.249 4.249 11 H 0.055 0.945 12 C -0.015 4.015 13 N -0.910 5.910 14 Si 0.948 3.052 15 H -0.269 1.269 16 H -0.295 1.295 17 H -0.290 1.290 18 C 0.107 3.893 19 C 0.410 3.590 20 F -0.198 7.198 21 F -0.203 7.203 22 F -0.202 7.202 23 O -0.379 6.379 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.045 0.955 32 H 0.068 0.932 33 H 0.249 0.751 34 H 0.096 0.904 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.149 -7.152 -8.361 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.002 4.002 3 H 0.055 0.945 4 C -0.172 4.172 5 C -0.184 4.184 6 C 0.009 3.991 7 H 0.087 0.913 8 C 0.008 3.992 9 N -0.286 5.286 10 C -0.379 4.379 11 H 0.073 0.927 12 C -0.213 4.213 13 N -0.553 5.553 14 Si 0.777 3.223 15 H -0.194 1.194 16 H -0.223 1.223 17 H -0.217 1.217 18 C -0.024 4.024 19 C 0.352 3.648 20 F -0.179 7.179 21 F -0.185 7.185 22 F -0.184 7.184 23 O -0.299 6.299 24 H 0.061 0.939 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.113 0.887 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.063 0.937 32 H 0.086 0.914 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.189 -6.955 -8.186 11.530 hybrid contribution 0.268 1.137 0.655 1.340 sum -3.921 -5.818 -7.530 10.292 Atomic orbital electron populations 1.21818 0.92849 1.02856 1.02244 1.23089 0.95669 0.95031 0.86377 0.94450 1.23265 0.95569 1.00904 0.97486 1.23158 0.98077 1.03026 0.94118 1.23389 0.86521 0.95216 0.94012 0.91307 1.21473 0.93649 1.02080 0.82022 1.43948 1.62324 1.16718 1.05618 1.18997 1.17636 0.86875 1.14422 0.92694 1.25604 0.96876 0.99128 0.99697 1.70113 1.25302 1.12995 1.46926 0.85534 0.80038 0.79407 0.77359 1.19384 1.22268 1.21672 1.22612 0.87455 0.92132 1.00240 1.23422 0.92182 0.72690 0.76508 1.93112 1.96529 1.67558 1.60732 1.93079 1.91090 1.45850 1.88497 1.93061 1.72593 1.89072 1.63690 1.88602 1.42219 1.64804 1.34237 0.93877 0.89282 0.91468 0.89050 0.88689 0.91599 0.88073 0.93653 0.91372 0.94146 0.88631 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.62 71.98 0.69 -3.04 16 2 C 0.06 1.82 4.08 31.26 0.13 1.95 16 3 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.13 -3.27 6.58 32.13 0.21 -3.06 16 5 C -0.15 -4.04 6.56 31.93 0.21 -3.83 16 6 C 0.07 2.48 3.76 31.06 0.12 2.60 16 7 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 8 C 0.13 5.90 4.75 86.38 0.41 6.31 16 9 N -0.57 -26.93 2.34 -701.99 -1.64 -28.57 16 10 C -0.25 -13.35 8.32 84.03 0.70 -12.65 16 11 H 0.06 3.00 7.91 -2.91 -0.02 2.97 16 12 C -0.01 -0.83 4.97 84.86 0.42 -0.41 16 13 N -0.91 -52.91 11.44 21.65 0.25 -52.66 16 14 Si 0.95 45.91 29.60 68.60 2.03 47.94 16 15 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 16 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 17 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 18 C 0.11 4.16 5.71 86.38 0.49 4.65 16 19 C 0.41 17.24 3.29 71.98 0.24 17.47 16 20 F -0.20 -9.69 16.54 44.97 0.74 -8.94 16 21 F -0.20 -7.50 17.32 44.97 0.78 -6.72 16 22 F -0.20 -9.12 16.83 44.97 0.76 -8.36 16 23 O -0.38 -15.62 10.27 -148.98 -1.53 -17.15 16 24 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.09 1.89 8.06 -2.38 -0.02 1.87 16 28 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.07 1.96 7.85 -2.39 -0.02 1.94 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.05 1.90 7.75 -2.39 -0.02 1.88 16 32 H 0.07 3.60 5.50 -2.39 -0.01 3.59 16 33 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 34 H 0.10 3.49 8.08 -2.39 -0.02 3.47 16 35 H 0.11 3.55 8.03 -2.38 -0.02 3.53 16 Total: -1.00 -64.43 301.78 6.09 -58.34 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: 1.08 Total: 6.14 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 3.62 Total: 10.00 kcal Atomic # 7 Polarization: -79.83 SS G_CDS: -1.39 Total: -81.23 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -1.53 Total: -17.15 kcal Atomic # 9 Polarization: -26.31 SS G_CDS: 2.28 Total: -24.03 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -64.43 6.09 -58.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687817222.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.892 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds