Wall clock time and date at job start Mon Mar 30 2020 04:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48502 * 109.47509 * 270.00280 * 3 2 1 5 5 H 1.48499 * 109.47126 * 30.00333 * 3 2 1 6 6 H 1.48501 * 109.47208 * 150.00588 * 3 2 1 7 7 C 1.37875 * 120.00653 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00214 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47111 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47416 * 305.00176 * 11 10 9 13 13 N 1.46907 * 109.47296 * 65.00032 * 11 10 9 14 14 C 1.50699 * 109.47675 * 184.99929 * 11 10 9 15 15 O 1.21280 * 120.00208 * 260.00724 * 14 11 10 16 16 N 1.34780 * 120.00151 * 79.99682 * 14 11 10 17 17 C 1.39397 * 120.00090 * 174.91856 * 16 14 11 18 18 C 1.38966 * 119.67561 * 185.07444 * 17 16 14 19 19 C 1.38443 * 119.16132 * 179.97438 * 18 17 16 20 20 C 1.38723 * 118.52035 * 359.97438 * 19 18 17 21 21 C 1.38418 * 119.28663 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.60410 * 179.97438 * 21 20 19 23 23 N 1.32101 * 120.78605 * 359.74417 * 21 20 19 24 24 H 0.97001 * 120.00434 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47242 * 60.00001 * 9 7 2 26 26 H 1.09007 * 109.46686 * 300.00568 * 9 7 2 27 27 H 1.09002 * 109.47127 * 60.00206 * 10 9 7 28 28 H 1.08994 * 109.47598 * 299.99909 * 10 9 7 29 29 H 1.00896 * 110.99537 * 59.99859 * 13 11 10 30 30 H 1.00899 * 111.00495 * 183.95554 * 13 11 10 31 31 H 0.96999 * 119.99624 * 354.92899 * 16 14 11 32 32 H 1.07998 * 120.42159 * 359.95834 * 18 17 16 33 33 H 1.07996 * 120.74114 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.34928 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 6 1.4806 -4.9870 0.0001 12 1 0.7887 -5.0068 0.8422 13 7 0.7284 -5.1189 -1.2549 14 6 2.4552 -6.1297 0.1239 15 8 2.7868 -6.7535 -0.8619 16 7 2.9586 -6.4584 1.3302 17 6 3.7763 -7.5796 1.4622 18 6 4.2053 -7.9736 2.7239 19 6 5.0166 -9.0891 2.8427 20 6 5.3721 -9.7753 1.6907 21 6 4.9088 -9.3275 0.4657 22 9 5.2515 -9.9907 -0.6604 23 7 4.1321 -8.2620 0.3849 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8721 -3.6042 -0.8904 29 1 1.3479 -5.1033 -2.0510 30 1 0.1640 -5.9553 -1.2521 31 1 2.7517 -5.9149 2.1065 32 1 3.9097 -7.4166 3.6007 33 1 5.3644 -9.4181 3.8108 34 1 6.0041 -10.6491 1.7492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691641089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:10 Heat of formation + Delta-G solvation = -37.157077 kcal Electronic energy + Delta-G solvation = -19419.901179 eV Core-core repulsion = 16074.585599 eV Total energy + Delta-G solvation = -3345.315580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.13901 -40.97166 -39.25459 -35.43593 -34.95546 -32.88905 -32.73906 -30.28888 -30.04742 -26.65076 -24.58985 -23.85444 -22.93789 -20.82706 -19.94514 -18.78497 -17.60976 -16.83066 -16.43299 -16.34113 -16.16794 -16.03716 -15.46781 -14.84562 -14.58755 -14.30428 -13.91782 -13.57825 -13.36438 -13.24451 -12.66785 -12.37332 -12.08438 -11.62304 -10.95227 -10.91293 -10.81635 -10.59418 -10.44135 -10.10357 -9.87124 -9.61715 -9.39285 -9.03892 -8.54175 -8.40851 -8.25904 -5.96757 -3.99199 0.64970 0.90202 2.59179 2.61406 3.33375 3.39808 3.42302 3.47427 3.50715 4.23367 4.47213 4.51759 4.67354 4.75227 4.84323 5.02544 5.34974 5.38442 5.41749 5.48093 5.71509 5.74541 5.99480 6.33359 6.47331 6.57837 6.85040 7.03066 7.34545 7.63217 7.70614 7.73053 7.91683 8.08862 8.14544 8.44538 9.08657 9.64308 11.14070 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.003606 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.810707 B = 7763.293566 C = 8083.807628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.097 4.097 11 C 0.082 3.918 12 H 0.103 0.897 13 N -0.804 5.804 14 C 0.471 3.529 15 O -0.479 6.479 16 N -0.659 5.659 17 C 0.404 3.596 18 C -0.223 4.223 19 C -0.020 4.020 20 C -0.235 4.235 21 C 0.340 3.660 22 F -0.111 7.111 23 N -0.512 5.512 24 H 0.260 0.740 25 H 0.036 0.964 26 H 0.014 0.986 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.350 0.650 30 H 0.336 0.664 31 H 0.424 0.576 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.761 -18.826 8.246 21.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.136 4.136 11 C -0.034 4.034 12 H 0.120 0.880 13 N -0.332 5.332 14 C 0.256 3.744 15 O -0.348 6.348 16 N -0.307 5.307 17 C 0.171 3.829 18 C -0.246 4.246 19 C -0.045 4.045 20 C -0.258 4.258 21 C 0.185 3.815 22 F -0.090 7.090 23 N -0.233 5.233 24 H 0.069 0.931 25 H 0.054 0.946 26 H 0.032 0.968 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.164 0.836 30 H 0.148 0.852 31 H 0.262 0.738 32 H 0.164 0.836 33 H 0.166 0.834 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.100 -18.127 6.783 20.616 hybrid contribution 1.320 -0.096 0.818 1.556 sum 8.421 -18.223 7.601 21.465 Atomic orbital electron populations 1.69966 1.05956 1.26481 1.50727 1.24985 0.94805 0.99076 0.95414 0.86647 0.79803 0.83714 0.78115 1.20700 1.21270 1.20001 1.21267 0.92911 0.91287 1.50764 0.92964 1.19021 0.93511 0.89738 0.98316 1.21705 0.98942 0.92037 1.00871 1.21927 0.93230 0.92737 0.95535 0.87958 1.59006 1.26726 1.44347 1.03149 1.23327 0.82430 0.86419 0.82200 1.90786 1.56910 1.51357 1.35734 1.44147 1.47316 1.25731 1.13507 1.18146 0.89302 0.87327 0.88113 1.21568 1.04910 1.01358 0.96795 1.21222 0.92660 0.92071 0.98594 1.21695 1.07498 1.05053 0.91529 1.17907 0.92731 0.88777 0.82063 1.91637 1.89236 1.77345 1.50760 1.66793 1.15557 1.08057 1.32873 0.93055 0.94577 0.96769 0.92764 0.92625 0.83599 0.85234 0.73788 0.83582 0.83356 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.51 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.64 16 10 C -0.10 -1.89 4.78 -26.74 -0.13 -2.01 16 11 C 0.08 1.31 3.15 -68.86 -0.22 1.09 16 12 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 13 N -0.80 -13.21 8.44 -5.65 -0.05 -13.26 16 14 C 0.47 7.39 7.03 -10.98 -0.08 7.31 16 15 O -0.48 -9.15 14.51 5.56 0.08 -9.07 16 16 N -0.66 -8.18 5.39 -11.43 -0.06 -8.24 16 17 C 0.40 5.17 7.42 -154.70 -1.15 4.02 16 18 C -0.22 -1.93 9.94 -39.24 -0.39 -2.32 16 19 C -0.02 -0.14 10.16 -39.33 -0.40 -0.54 16 20 C -0.23 -2.12 10.08 -39.34 -0.40 -2.51 16 21 C 0.34 4.49 8.41 -17.37 -0.15 4.34 16 22 F -0.11 -1.53 17.29 2.25 0.04 -1.49 16 23 N -0.51 -8.05 7.90 -12.71 -0.10 -8.15 16 24 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 25 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 26 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.35 5.90 8.58 -39.29 -0.34 5.56 16 30 H 0.34 4.80 9.06 -39.29 -0.36 4.44 16 31 H 0.42 3.78 8.70 -40.82 -0.36 3.42 16 32 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.15 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 304.95 15.07 4.60 4.60 Total: -1.00 -34.75 304.95 -7.18 -41.93 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -3.95 Total: 6.31 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -3.45 Total: -3.29 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: 0.53 Total: -55.46 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.08 Total: -9.07 kcal Atomic # 9 Polarization: -1.53 SS G_CDS: 0.04 Total: -1.49 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -34.75 -7.18 -41.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691641089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.774 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds