Wall clock time and date at job start Mon Mar 30 2020 04:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99628 * 2 1 4 4 H 1.48502 * 109.47509 * 270.00280 * 3 2 1 5 5 H 1.48499 * 109.47126 * 30.00333 * 3 2 1 6 6 H 1.48501 * 109.47208 * 150.00588 * 3 2 1 7 7 C 1.37875 * 120.00653 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00214 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99704 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47049 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47111 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.47416 * 305.00176 * 11 10 9 13 13 N 1.46907 * 109.47296 * 65.00032 * 11 10 9 14 14 C 1.50699 * 109.47675 * 184.99929 * 11 10 9 15 15 O 1.21280 * 120.00208 * 260.00724 * 14 11 10 16 16 N 1.34780 * 120.00151 * 79.99682 * 14 11 10 17 17 C 1.39397 * 120.00090 * 174.91856 * 16 14 11 18 18 C 1.38966 * 119.67561 * 185.07444 * 17 16 14 19 19 C 1.38443 * 119.16132 * 179.97438 * 18 17 16 20 20 C 1.38723 * 118.52035 * 359.97438 * 19 18 17 21 21 C 1.38418 * 119.28663 * 0.02562 * 20 19 18 22 22 F 1.35098 * 119.60410 * 179.97438 * 21 20 19 23 23 N 1.32101 * 120.78605 * 359.74417 * 21 20 19 24 24 H 0.97001 * 120.00434 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.47242 * 60.00001 * 9 7 2 26 26 H 1.09007 * 109.46686 * 300.00568 * 9 7 2 27 27 H 1.09002 * 109.47127 * 60.00206 * 10 9 7 28 28 H 1.08994 * 109.47598 * 299.99909 * 10 9 7 29 29 H 1.00896 * 110.99537 * 59.99859 * 13 11 10 30 30 H 1.00899 * 111.00495 * 183.95554 * 13 11 10 31 31 H 0.96999 * 119.99624 * 354.92899 * 16 14 11 32 32 H 1.07998 * 120.42159 * 359.95834 * 18 17 16 33 33 H 1.07996 * 120.74114 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.34928 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4964 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2454 -3.6619 -0.0005 11 6 1.4806 -4.9870 0.0001 12 1 0.7887 -5.0068 0.8422 13 7 0.7284 -5.1189 -1.2549 14 6 2.4552 -6.1297 0.1239 15 8 2.7868 -6.7535 -0.8619 16 7 2.9586 -6.4584 1.3302 17 6 3.7763 -7.5796 1.4622 18 6 4.2053 -7.9736 2.7239 19 6 5.0166 -9.0891 2.8427 20 6 5.3721 -9.7753 1.6907 21 6 4.9088 -9.3275 0.4657 22 9 5.2515 -9.9907 -0.6604 23 7 4.1321 -8.2620 0.3849 24 1 -0.4851 0.8400 0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8897 27 1 2.8721 -3.6042 0.8895 28 1 2.8721 -3.6042 -0.8904 29 1 1.3479 -5.1033 -2.0510 30 1 0.1640 -5.9553 -1.2521 31 1 2.7517 -5.9149 2.1065 32 1 3.9097 -7.4166 3.6007 33 1 5.3644 -9.4181 3.8108 34 1 6.0041 -10.6491 1.7492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691641089.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:09 Heat of formation + Delta-G solvation = -63.249186 kcal Electronic energy + Delta-G solvation = -19421.032618 eV Core-core repulsion = 16074.585599 eV Total energy + Delta-G solvation = -3346.447019 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.06727 -41.95017 -40.31477 -36.88488 -36.06730 -34.82381 -33.57633 -31.95156 -31.03899 -28.23732 -26.04302 -24.73823 -24.12322 -22.38127 -21.25254 -19.72680 -18.78460 -18.32793 -17.70867 -17.27882 -17.15890 -17.05576 -16.69648 -16.46444 -15.98924 -15.69078 -15.07468 -14.73046 -14.31961 -14.27943 -14.08607 -13.83267 -13.42998 -13.26905 -12.81109 -12.53707 -12.28036 -11.89147 -11.83745 -11.68760 -11.32587 -11.08771 -10.92546 -10.56678 -10.45976 -9.65728 -9.38322 -8.13187 -6.23185 -0.16187 0.17311 1.42460 1.43809 1.46766 1.54320 1.68352 2.45034 2.60026 2.66281 3.20163 3.42760 3.56895 3.77827 3.86679 4.07145 4.11827 4.22133 4.27280 4.66966 4.75693 4.87265 4.93355 5.08231 5.16893 5.24199 5.58212 5.68479 5.85198 5.90612 5.99353 6.10387 6.30798 6.44422 6.69896 6.95568 7.10698 7.44986 8.97906 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.031709 B = 0.003606 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.810707 B = 7763.293566 C = 8083.807628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.039 3.961 10 C -0.084 4.084 11 C 0.091 3.909 12 H 0.122 0.878 13 N -0.817 5.817 14 C 0.478 3.522 15 O -0.520 6.520 16 N -0.648 5.648 17 C 0.367 3.633 18 C -0.200 4.200 19 C -0.009 4.009 20 C -0.213 4.213 21 C 0.296 3.704 22 F -0.129 7.129 23 N -0.565 5.565 24 H 0.262 0.738 25 H 0.005 0.995 26 H 0.000 1.000 27 H 0.073 0.927 28 H 0.039 0.961 29 H 0.345 0.655 30 H 0.347 0.653 31 H 0.440 0.560 32 H 0.185 0.815 33 H 0.200 0.800 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.325 -19.417 11.133 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.204 1.204 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.122 4.122 11 C -0.025 4.025 12 H 0.140 0.860 13 N -0.345 5.345 14 C 0.263 3.737 15 O -0.393 6.393 16 N -0.297 5.297 17 C 0.136 3.864 18 C -0.223 4.223 19 C -0.034 4.034 20 C -0.235 4.235 21 C 0.143 3.857 22 F -0.109 7.109 23 N -0.287 5.287 24 H 0.071 0.929 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.158 0.842 30 H 0.160 0.840 31 H 0.281 0.719 32 H 0.202 0.798 33 H 0.217 0.783 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.683 -18.742 9.720 22.829 hybrid contribution 0.857 0.010 0.003 0.857 sum 9.541 -18.732 9.724 23.161 Atomic orbital electron populations 1.70093 1.07583 1.27507 1.51740 1.25872 0.95679 1.02943 0.95017 0.85560 0.78837 0.79099 0.78198 1.20444 1.20695 1.18717 1.21732 0.93355 0.92759 1.50351 0.92662 1.18833 0.93849 0.91124 0.96021 1.21430 0.97806 0.91935 1.01011 1.21728 0.93380 0.91340 0.96024 0.86004 1.59009 1.27026 1.45216 1.03280 1.22973 0.82030 0.85872 0.82776 1.90775 1.58285 1.52820 1.37370 1.43854 1.46918 1.26104 1.12864 1.18524 0.90906 0.87760 0.89223 1.22046 1.02980 1.01245 0.96019 1.21864 0.91030 0.90665 0.99886 1.22114 1.05884 1.05259 0.90236 1.18379 0.94687 0.89530 0.83120 1.91582 1.89599 1.77690 1.51983 1.66510 1.17069 1.09631 1.35481 0.92928 0.97682 0.98167 0.90843 0.94221 0.84170 0.83971 0.71897 0.79770 0.78330 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.00 0.16 5.46 84.66 0.46 0.62 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 8 H 0.06 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.04 1.97 4.86 29.85 0.15 2.12 16 10 C -0.08 -3.25 4.78 30.59 0.15 -3.11 16 11 C 0.09 2.92 3.15 44.17 0.14 3.06 16 12 H 0.12 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.82 -27.60 8.44 -171.79 -1.45 -29.05 16 14 C 0.48 15.04 7.03 87.66 0.62 15.66 16 15 O -0.52 -20.59 14.51 -3.03 -0.04 -20.64 16 16 N -0.65 -15.29 5.39 -308.48 -1.66 -16.96 16 17 C 0.37 8.89 7.42 132.89 0.99 9.87 16 18 C -0.20 -2.66 9.94 22.49 0.22 -2.43 16 19 C -0.01 -0.09 10.16 22.43 0.23 0.14 16 20 C -0.21 -3.20 10.08 22.43 0.23 -2.97 16 21 C 0.30 7.78 8.41 84.70 0.71 8.49 16 22 F -0.13 -3.74 17.29 44.97 0.78 -2.96 16 23 N -0.57 -17.95 7.90 -194.12 -1.53 -19.48 16 24 H 0.26 14.89 8.31 -92.71 -0.77 14.11 16 25 H 0.00 0.27 7.75 -2.39 -0.02 0.25 16 26 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 27 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 28 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.34 12.20 8.58 -89.70 -0.77 11.43 16 30 H 0.35 10.17 9.06 -89.69 -0.81 9.36 16 31 H 0.44 6.84 8.70 -92.71 -0.81 6.03 16 32 H 0.19 0.97 8.06 -2.91 -0.02 0.95 16 33 H 0.20 -0.02 8.06 -2.91 -0.02 -0.04 16 34 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -79.32 304.95 1.29 -78.04 By element: Atomic # 1 Polarization: 20.71 SS G_CDS: -1.23 Total: 19.48 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.12 Total: 1.26 kcal Atomic # 7 Polarization: -116.85 SS G_CDS: -4.36 Total: -121.22 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.64 kcal Atomic # 9 Polarization: -3.74 SS G_CDS: 0.78 Total: -2.96 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -79.32 1.29 -78.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691641089.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.786 kcal (2) G-P(sol) polarization free energy of solvation -79.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds