Wall clock time and date at job start Mon Mar 30 2020 05:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46985 * 2 1 4 4 N 1.29415 * 125.69312 * 89.96243 * 3 2 1 5 5 N 1.26395 * 116.47522 * 179.74666 * 4 3 2 6 6 C 1.29418 * 116.47229 * 0.53241 * 5 4 3 7 7 C 1.50700 * 125.69609 * 179.76371 * 6 5 4 8 8 N 1.46907 * 109.46799 * 89.69802 * 7 6 5 9 9 C 1.48554 * 110.99725 * 290.12530 * 8 7 6 10 10 C 1.54379 * 104.59333 * 200.95933 * 9 8 7 11 11 C 1.54260 * 105.06033 * 23.85380 * 10 9 8 12 12 H 1.08995 * 110.32560 * 240.99850 * 11 10 9 13 13 C 1.50705 * 110.32379 * 118.89518 * 11 10 9 14 14 H 1.07997 * 119.99923 * 245.25562 * 13 11 10 15 15 C 1.37876 * 119.99707 * 64.97861 * 13 11 10 16 16 N 1.31515 * 120.00190 * 6.70339 * 15 13 11 17 17 Si 1.86803 * 119.99917 * 186.70385 * 15 13 11 18 18 H 1.48501 * 109.47219 * 94.02691 * 17 15 13 19 19 H 1.48498 * 109.46988 * 214.03145 * 17 15 13 20 20 H 1.48505 * 109.47012 * 334.02814 * 17 15 13 21 21 C 1.48560 * 110.99895 * 174.70706 * 8 7 6 22 22 S 1.71215 * 125.69818 * 270.00259 * 3 2 1 23 23 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46738 * 299.99674 * 1 2 3 25 25 H 1.08999 * 109.47279 * 59.99407 * 1 2 3 26 26 H 1.09004 * 109.46738 * 240.00326 * 2 1 3 27 27 H 1.08994 * 109.46966 * 120.00231 * 2 1 3 28 28 H 1.08998 * 109.47227 * 329.69968 * 7 6 5 29 29 H 1.08996 * 109.47266 * 209.69463 * 7 6 5 30 30 H 1.09000 * 110.41264 * 82.18301 * 9 8 7 31 31 H 1.08999 * 110.41505 * 319.73509 * 9 8 7 32 32 H 1.09004 * 110.32674 * 264.95725 * 10 9 8 33 33 H 1.09005 * 110.32740 * 142.75308 * 10 9 8 34 34 H 0.96998 * 119.99782 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.41181 * 40.26393 * 21 8 7 36 36 H 1.09002 * 110.41346 * 277.81747 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2834 2.1330 1.0510 5 7 2.7041 3.3075 0.8486 6 6 2.8270 3.6713 -0.3873 7 6 3.3029 5.0194 -0.8640 8 7 4.7636 4.9964 -1.0185 9 6 5.4376 4.9212 0.3033 10 6 6.8680 5.4389 0.0405 11 6 6.7490 6.3248 -1.2167 12 1 7.3682 5.9265 -2.0205 13 6 7.1531 7.7415 -0.8990 14 1 6.4231 8.5357 -0.9508 15 6 8.4533 8.0227 -0.5366 16 7 9.3704 7.0819 -0.5952 17 14 8.9123 9.7399 0.0377 18 1 8.8385 9.8026 1.5195 19 1 10.2947 10.0562 -0.4030 20 1 7.9686 10.7262 -0.5471 21 6 5.2567 6.2678 -1.6078 22 16 2.3653 2.3628 -1.3904 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.0266 5.7809 -0.1348 29 1 2.8397 5.2498 -1.8234 30 1 5.4654 3.8908 0.6577 31 1 4.9292 5.5593 1.0261 32 1 7.5442 4.6047 -0.1468 33 1 7.2188 6.0287 0.8875 34 1 10.2850 7.2796 -0.3398 35 1 4.7200 7.1166 -1.1840 36 1 5.1483 6.2514 -2.6923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702754413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:23 Heat of formation + Delta-G solvation = 56.709989 kcal Electronic energy + Delta-G solvation = -17763.159618 eV Core-core repulsion = 14988.127595 eV Total energy + Delta-G solvation = -2775.032022 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.24742 -38.14195 -34.88027 -33.46942 -31.70941 -29.64242 -28.18585 -27.25151 -25.05919 -23.96783 -23.08976 -20.47266 -19.66020 -19.45991 -19.05371 -16.44455 -15.90683 -15.65097 -14.97996 -14.72601 -14.50081 -14.24663 -13.99843 -13.35587 -13.13190 -12.79178 -12.49707 -12.16213 -12.06052 -11.57085 -11.29275 -11.14783 -11.02959 -10.77401 -10.53291 -10.37439 -10.32870 -10.09446 -9.80879 -9.65602 -9.63124 -9.28466 -8.77370 -8.39940 -8.01271 -6.03975 -4.06829 0.45842 0.93629 1.42679 2.60190 3.29593 3.37062 3.39265 3.89388 4.35510 4.44318 4.64074 4.73323 4.85593 5.00239 5.08041 5.29175 5.41568 5.47300 5.55916 5.65077 5.67217 5.80408 5.83038 6.05168 6.25711 6.32024 6.48470 6.78368 7.00718 7.12702 7.42070 7.50478 7.62710 7.84040 7.96988 8.42307 8.61966 8.96021 9.57002 11.05828 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.054729 B = 0.003723 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.491615 B = 7518.212828 C = 7594.367557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.031 4.031 4 N -0.261 5.261 5 N -0.260 5.260 6 C 0.011 3.989 7 C 0.118 3.882 8 N -0.512 5.512 9 C 0.037 3.963 10 C -0.096 4.096 11 C 0.049 3.951 12 H 0.040 0.960 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.888 3.112 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.042 3.958 22 S 0.179 5.821 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.260 0.740 35 H 0.040 0.960 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.096 -12.054 -2.441 20.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.310 4.310 4 N -0.098 5.098 5 N -0.098 5.098 6 C -0.268 4.268 7 C -0.014 4.014 8 N -0.237 5.237 9 C -0.090 4.090 10 C -0.135 4.135 11 C 0.030 3.970 12 H 0.058 0.942 13 C -0.557 4.557 14 H 0.074 0.926 15 C -0.138 4.138 16 N -0.523 5.523 17 Si 0.716 3.284 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.085 4.085 22 S 0.423 5.577 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.752 -12.472 -2.395 20.234 hybrid contribution 0.195 1.612 1.046 1.932 sum -15.557 -10.860 -1.349 19.021 Atomic orbital electron populations 1.21784 0.93388 1.02675 1.02748 1.20111 0.96712 0.86788 1.04587 1.29197 1.05279 1.04179 0.92374 1.71417 1.12406 0.99034 1.26987 1.71466 1.13791 1.07315 1.17210 1.29168 1.02356 1.03173 0.92145 1.20724 0.92233 0.87579 1.00890 1.65500 1.01051 1.36245 1.20930 1.23167 0.97064 0.99581 0.89216 1.22293 0.91702 0.98512 1.00973 1.19371 0.88549 0.95245 0.93801 0.94225 1.21172 0.94944 0.92771 1.46768 0.92617 1.24964 0.96421 0.96866 0.95556 1.69988 1.02024 1.32902 1.47384 0.86641 0.77779 0.84870 0.79077 1.20716 1.21251 1.19890 1.23346 0.99305 0.87595 0.98270 1.83588 1.57053 1.05354 1.11728 0.91190 0.91909 0.92329 0.89368 0.88551 0.91287 0.88711 0.92353 0.94252 0.93609 0.91710 0.92980 0.94159 0.91608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.90 37.16 0.37 -0.63 16 2 C -0.04 -0.33 6.54 -27.88 -0.18 -0.52 16 3 C -0.03 -0.38 6.78 -13.29 -0.09 -0.47 16 4 N -0.26 -4.16 11.66 32.58 0.38 -3.78 16 5 N -0.26 -4.49 11.64 32.58 0.38 -4.11 16 6 C 0.01 0.17 6.53 -13.30 -0.09 0.08 16 7 C 0.12 1.82 5.42 -4.97 -0.03 1.79 16 8 N -0.51 -9.58 5.36 -231.41 -1.24 -10.82 16 9 C 0.04 0.76 5.96 -2.19 -0.01 0.75 16 10 C -0.10 -2.28 6.06 -25.35 -0.15 -2.44 16 11 C 0.05 1.22 2.88 -90.39 -0.26 0.96 16 12 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 13 C -0.52 -13.98 8.31 -34.44 -0.29 -14.26 16 14 H 0.06 1.48 7.56 -52.49 -0.40 1.08 16 15 C 0.06 1.77 5.10 -17.82 -0.09 1.68 16 16 N -0.89 -25.43 12.89 55.43 0.71 -24.72 16 17 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.04 0.84 6.02 -2.18 -0.01 0.83 16 22 S 0.18 2.12 23.04 -107.50 -2.48 -0.36 16 23 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.08 7.88 -51.93 -0.41 0.67 16 29 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 30 H 0.06 1.20 8.12 -51.93 -0.42 0.77 16 31 H 0.04 0.81 7.82 -51.93 -0.41 0.40 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 1.66 7.51 -51.93 -0.39 1.27 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.04 0.81 7.54 -51.93 -0.39 0.42 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 LS Contribution 312.96 15.07 4.72 4.72 Total: -1.00 -30.33 312.96 -8.74 -39.07 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -5.35 Total: -3.89 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: -0.84 Total: -12.23 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: 0.23 Total: -43.43 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.12 SS G_CDS: -2.48 Total: -0.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.33 -8.74 -39.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702754413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.777 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds