Wall clock time and date at job start Mon Mar 30 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.46985 * 2 1 4 4 N 1.29415 * 125.69312 * 89.96243 * 3 2 1 5 5 N 1.26395 * 116.47522 * 179.74666 * 4 3 2 6 6 C 1.29418 * 116.47229 * 0.53241 * 5 4 3 7 7 C 1.50700 * 125.69609 * 179.76371 * 6 5 4 8 8 N 1.46907 * 109.46799 * 89.69802 * 7 6 5 9 9 C 1.48554 * 110.99725 * 290.12530 * 8 7 6 10 10 C 1.54379 * 104.59333 * 200.95933 * 9 8 7 11 11 C 1.54260 * 105.06033 * 23.85380 * 10 9 8 12 12 H 1.08995 * 110.32560 * 240.99850 * 11 10 9 13 13 C 1.50705 * 110.32379 * 118.89518 * 11 10 9 14 14 H 1.07997 * 119.99923 * 245.25562 * 13 11 10 15 15 C 1.37876 * 119.99707 * 64.97861 * 13 11 10 16 16 N 1.31515 * 120.00190 * 6.70339 * 15 13 11 17 17 Si 1.86803 * 119.99917 * 186.70385 * 15 13 11 18 18 H 1.48501 * 109.47219 * 94.02691 * 17 15 13 19 19 H 1.48498 * 109.46988 * 214.03145 * 17 15 13 20 20 H 1.48505 * 109.47012 * 334.02814 * 17 15 13 21 21 C 1.48560 * 110.99895 * 174.70706 * 8 7 6 22 22 S 1.71215 * 125.69818 * 270.00259 * 3 2 1 23 23 H 1.08996 * 109.47318 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46738 * 299.99674 * 1 2 3 25 25 H 1.08999 * 109.47279 * 59.99407 * 1 2 3 26 26 H 1.09004 * 109.46738 * 240.00326 * 2 1 3 27 27 H 1.08994 * 109.46966 * 120.00231 * 2 1 3 28 28 H 1.08998 * 109.47227 * 329.69968 * 7 6 5 29 29 H 1.08996 * 109.47266 * 209.69463 * 7 6 5 30 30 H 1.09000 * 110.41264 * 82.18301 * 9 8 7 31 31 H 1.08999 * 110.41505 * 319.73509 * 9 8 7 32 32 H 1.09004 * 110.32674 * 264.95725 * 10 9 8 33 33 H 1.09005 * 110.32740 * 142.75308 * 10 9 8 34 34 H 0.96998 * 119.99782 * 180.02562 * 16 15 13 35 35 H 1.09001 * 110.41181 * 40.26393 * 21 8 7 36 36 H 1.09002 * 110.41346 * 277.81747 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2834 2.1330 1.0510 5 7 2.7041 3.3075 0.8486 6 6 2.8270 3.6713 -0.3873 7 6 3.3029 5.0194 -0.8640 8 7 4.7636 4.9964 -1.0185 9 6 5.4376 4.9212 0.3033 10 6 6.8680 5.4389 0.0405 11 6 6.7490 6.3248 -1.2167 12 1 7.3682 5.9265 -2.0205 13 6 7.1531 7.7415 -0.8990 14 1 6.4231 8.5357 -0.9508 15 6 8.4533 8.0227 -0.5366 16 7 9.3704 7.0819 -0.5952 17 14 8.9123 9.7399 0.0377 18 1 8.8385 9.8026 1.5195 19 1 10.2947 10.0562 -0.4030 20 1 7.9686 10.7262 -0.5471 21 6 5.2567 6.2678 -1.6078 22 16 2.3653 2.3628 -1.3904 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.0266 5.7809 -0.1348 29 1 2.8397 5.2498 -1.8234 30 1 5.4654 3.8908 0.6577 31 1 4.9292 5.5593 1.0261 32 1 7.5442 4.6047 -0.1468 33 1 7.2188 6.0287 0.8875 34 1 10.2850 7.2796 -0.3398 35 1 4.7200 7.1166 -1.1840 36 1 5.1483 6.2514 -2.6923 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702754413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:19:22 Heat of formation + Delta-G solvation = 36.250712 kcal Electronic energy + Delta-G solvation = -17764.046798 eV Core-core repulsion = 14988.127595 eV Total energy + Delta-G solvation = -2775.919203 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.34293 -39.77497 -35.88795 -35.07419 -33.28864 -30.97287 -29.99273 -28.44746 -26.54188 -25.51257 -23.98826 -22.07234 -21.37891 -20.61024 -20.20249 -18.38714 -17.23332 -16.88481 -16.59289 -16.18713 -15.84942 -15.45806 -15.03704 -14.54809 -14.43672 -14.21533 -13.86851 -13.52405 -13.06941 -13.05426 -12.67981 -12.63167 -12.57374 -12.34653 -12.18097 -12.13065 -11.73113 -11.41715 -11.24587 -11.11690 -10.83146 -10.69291 -10.61354 -10.50797 -9.53866 -8.14842 -6.23982 -0.56055 -0.04025 0.39688 1.40783 1.42462 1.49777 1.52175 2.42062 2.87169 3.15794 3.19584 3.53760 3.80319 4.01651 4.04304 4.27048 4.27398 4.33837 4.46321 4.48237 4.58029 4.61426 4.76920 4.78548 4.97897 5.01180 5.06260 5.18123 5.23945 5.30619 5.56471 5.64099 5.80798 5.91295 6.01895 6.37229 6.87305 7.43564 7.55331 8.95132 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.054729 B = 0.003723 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.491615 B = 7518.212828 C = 7594.367557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.044 4.044 3 C -0.026 4.026 4 N -0.301 5.301 5 N -0.293 5.293 6 C -0.021 4.021 7 C 0.120 3.880 8 N -0.511 5.511 9 C 0.055 3.945 10 C -0.089 4.089 11 C 0.041 3.959 12 H 0.007 0.993 13 C -0.531 4.531 14 H 0.059 0.941 15 C 0.013 3.987 16 N -0.919 5.919 17 Si 0.953 3.047 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.264 1.264 21 C 0.055 3.945 22 S 0.246 5.754 23 H 0.094 0.906 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.115 0.885 27 H 0.099 0.901 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.057 0.943 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.985 -12.624 -3.490 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.305 4.305 4 N -0.138 5.138 5 N -0.131 5.131 6 C -0.300 4.300 7 C -0.012 4.012 8 N -0.236 5.236 9 C -0.073 4.073 10 C -0.128 4.128 11 C 0.022 3.978 12 H 0.025 0.975 13 C -0.569 4.569 14 H 0.077 0.923 15 C -0.186 4.186 16 N -0.558 5.558 17 Si 0.778 3.222 18 H -0.205 1.205 19 H -0.210 1.210 20 H -0.188 1.188 21 C -0.073 4.073 22 S 0.491 5.509 23 H 0.112 0.888 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.133 0.867 27 H 0.117 0.883 28 H 0.084 0.916 29 H 0.145 0.855 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -17.664 -13.041 -3.453 22.226 hybrid contribution 0.735 1.661 1.314 2.242 sum -16.929 -11.379 -2.139 20.510 Atomic orbital electron populations 1.21782 0.92084 1.04147 1.02214 1.20414 0.97691 0.84424 1.06037 1.29937 1.02958 1.05443 0.92148 1.71391 1.14522 0.99263 1.28659 1.71421 1.14614 1.08358 1.18750 1.29112 1.03754 1.04296 0.92838 1.20791 0.89700 0.88104 1.02581 1.65414 1.03490 1.35256 1.19435 1.22886 0.94953 0.99130 0.90314 1.22091 0.93589 0.97440 0.99660 1.19330 0.91253 0.94230 0.93001 0.97486 1.21537 0.95170 0.93908 1.46296 0.92299 1.25758 0.96531 1.00606 0.95708 1.70113 1.02289 1.34937 1.48482 0.85628 0.77554 0.80536 0.78462 1.20532 1.21039 1.18769 1.23124 0.96120 0.88511 0.99496 1.83266 1.55254 1.02802 1.09623 0.88751 0.93517 0.91792 0.86694 0.88306 0.91636 0.85530 0.92430 0.94439 0.95254 0.94429 0.93056 0.93744 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.90 71.98 0.71 -0.83 16 2 C -0.04 -0.61 6.54 29.85 0.20 -0.41 16 3 C -0.03 -0.59 6.78 88.47 0.60 0.01 16 4 N -0.30 -9.38 11.66 -50.85 -0.59 -9.98 16 5 N -0.29 -9.99 11.64 -50.85 -0.59 -10.58 16 6 C -0.02 -0.60 6.53 88.46 0.58 -0.02 16 7 C 0.12 3.47 5.42 85.56 0.46 3.93 16 8 N -0.51 -18.54 5.36 -886.06 -4.75 -23.29 16 9 C 0.06 2.27 5.96 86.45 0.52 2.79 16 10 C -0.09 -4.36 6.06 31.49 0.19 -4.17 16 11 C 0.04 2.06 2.88 -10.64 -0.03 2.03 16 12 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 13 C -0.53 -28.90 8.31 25.60 0.21 -28.68 16 14 H 0.06 3.10 7.56 -2.91 -0.02 3.08 16 15 C 0.01 0.73 5.10 84.65 0.43 1.16 16 16 N -0.92 -54.14 12.89 21.45 0.28 -53.86 16 17 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 21 C 0.05 2.15 6.02 86.45 0.52 2.67 16 22 S 0.25 5.17 23.04 -56.49 -1.30 3.86 16 23 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 24 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.96 7.88 -2.39 -0.02 1.94 16 29 H 0.13 2.82 8.13 -2.39 -0.02 2.80 16 30 H 0.06 2.38 8.12 -2.39 -0.02 2.36 16 31 H 0.04 1.55 7.82 -2.39 -0.02 1.53 16 32 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.04 2.00 7.51 -2.38 -0.02 1.98 16 34 H 0.26 14.62 8.31 -92.71 -0.77 13.84 16 35 H 0.04 1.72 7.54 -2.39 -0.02 1.70 16 36 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -66.96 312.96 0.52 -66.44 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: 1.06 Total: 3.28 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.39 Total: -21.53 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -5.66 Total: -97.72 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.30 Total: 3.86 kcal Total: -66.96 0.52 -66.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702754413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.695 kcal (2) G-P(sol) polarization free energy of solvation -66.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds