Wall clock time and date at job start Mon Mar 30 2020 05:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47236 * 2 1 4 4 N 1.29408 * 125.69915 * 89.95587 * 3 2 1 5 5 N 1.26402 * 116.47797 * 180.02562 * 4 3 2 6 6 C 1.29415 * 116.47477 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.69826 * 180.02562 * 6 5 4 8 8 N 1.46896 * 109.47233 * 89.97430 * 7 6 5 9 9 C 1.46893 * 111.00103 * 170.00299 * 8 7 6 10 10 C 1.50698 * 109.47100 * 285.61660 * 9 8 7 11 11 H 1.07999 * 120.00105 * 4.84680 * 10 9 8 12 12 C 1.37876 * 120.00235 * 184.85490 * 10 9 8 13 13 N 1.31515 * 119.99806 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00198 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47559 * 59.99282 * 14 12 10 16 16 H 1.48501 * 109.47343 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.46740 * 299.99217 * 14 12 10 18 18 C 1.46906 * 110.99988 * 293.95619 * 8 7 6 19 19 C 1.53000 * 117.49846 * 246.55041 * 18 8 7 20 20 C 1.52996 * 117.49821 * 177.92971 * 18 8 7 21 21 S 1.71217 * 125.69267 * 270.00122 * 3 2 1 22 22 H 1.09001 * 109.47349 * 300.00109 * 1 2 3 23 23 H 1.08996 * 109.47029 * 60.00261 * 1 2 3 24 24 H 1.09003 * 109.47170 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46568 * 239.99406 * 2 1 3 26 26 H 1.09001 * 109.46622 * 120.00315 * 2 1 3 27 27 H 1.09000 * 109.47422 * 209.97694 * 7 6 5 28 28 H 1.09002 * 109.46984 * 329.97279 * 7 6 5 29 29 H 1.09001 * 109.47478 * 45.61282 * 9 8 7 30 30 H 1.09003 * 109.47574 * 165.61594 * 9 8 7 31 31 H 0.97004 * 119.99717 * 180.02562 * 13 12 10 32 32 H 1.09006 * 115.54655 * 32.25834 * 18 8 7 33 33 H 1.09005 * 117.49684 * 359.97438 * 19 18 8 34 34 H 1.08999 * 117.49945 * 145.01979 * 19 18 8 35 35 H 1.09001 * 117.49689 * 214.98028 * 20 18 8 36 36 H 1.08996 * 117.50185 * 359.97000 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2834 2.1330 1.0509 5 7 2.6989 3.3094 0.8484 6 6 2.8269 3.6713 -0.3876 7 6 3.3036 5.0190 -0.8644 8 7 4.7642 4.9953 -1.0188 9 6 5.2410 6.2046 -1.7030 10 6 4.9064 6.1168 -3.1697 11 1 4.3231 5.2875 -3.5419 12 6 5.3451 7.0950 -4.0367 13 7 6.0551 8.1051 -3.5835 14 14 4.9297 6.9866 -5.8547 15 1 3.4547 6.9899 -6.0267 16 1 5.5132 8.1521 -6.5662 17 1 5.4907 5.7316 -6.4165 18 6 5.4284 4.8294 0.2810 19 6 6.2642 6.0003 0.8018 20 6 6.9555 4.7362 0.2872 21 16 2.3654 2.3626 -1.3906 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 2.8405 5.2498 -1.8237 28 1 3.0276 5.7808 -0.1352 29 1 4.7568 7.0808 -1.2718 30 1 6.3208 6.2893 -1.5811 31 1 6.3634 8.7935 -4.1934 32 1 4.8848 4.2332 1.0140 33 1 6.3215 6.8937 0.1798 34 1 6.2705 6.1749 1.8778 35 1 7.4166 4.0791 1.0245 36 1 7.4674 4.7976 -0.6732 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702785323.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:20:04 Heat of formation + Delta-G solvation = 90.350185 kcal Electronic energy + Delta-G solvation = -17965.822339 eV Core-core repulsion = 15192.249065 eV Total energy + Delta-G solvation = -2773.573274 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.07615 -38.16830 -34.78856 -33.72112 -32.59364 -30.41368 -27.82768 -26.37724 -24.59813 -23.08528 -22.69816 -21.69207 -19.70376 -19.18388 -18.69277 -16.84875 -15.84176 -15.54956 -15.14792 -14.80815 -14.44410 -14.23423 -13.61583 -13.25565 -13.05415 -12.65410 -12.49020 -12.25236 -11.91236 -11.50795 -11.37967 -11.24573 -10.93360 -10.79791 -10.72631 -10.29305 -10.20415 -9.99149 -9.88899 -9.72637 -9.46490 -9.41964 -9.18977 -8.49696 -7.30648 -6.10440 -4.13172 0.64977 1.14173 1.65667 2.75205 3.28449 3.33529 3.35526 4.07410 4.32032 4.42918 4.62942 4.77021 4.90221 4.97261 5.19269 5.25617 5.31747 5.53658 5.56607 5.60583 5.64248 5.71329 5.78223 5.93591 6.01540 6.16165 6.19330 6.22348 6.58518 6.77767 7.12797 7.18060 7.68453 7.93679 8.03166 8.38338 8.77861 8.92601 9.51431 10.99833 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.019727 B = 0.005680 C = 0.004630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.016862 B = 4928.311403 C = 6046.675063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.040 4.040 4 N -0.264 5.264 5 N -0.271 5.271 6 C 0.016 3.984 7 C 0.137 3.863 8 N -0.498 5.498 9 C 0.190 3.810 10 C -0.514 4.514 11 H 0.062 0.938 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.017 3.983 19 C -0.220 4.220 20 C -0.173 4.173 21 S 0.190 5.810 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.094 0.906 27 H 0.109 0.891 28 H 0.063 0.937 29 H -0.003 1.003 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 -12.613 4.926 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.320 4.320 4 N -0.102 5.102 5 N -0.109 5.109 6 C -0.263 4.263 7 C 0.005 3.995 8 N -0.221 5.221 9 C 0.065 3.935 10 C -0.552 4.552 11 H 0.080 0.920 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.093 4.093 19 C -0.259 4.259 20 C -0.211 4.211 21 S 0.434 5.566 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.105 0.895 26 H 0.112 0.888 27 H 0.127 0.873 28 H 0.080 0.920 29 H 0.015 0.985 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.693 -12.763 4.901 15.687 hybrid contribution -0.166 0.790 -0.371 0.889 sum -7.859 -11.972 4.530 15.021 Atomic orbital electron populations 1.21783 0.93523 1.02524 1.02768 1.20068 0.96620 0.86969 1.04367 1.29137 1.05818 1.04164 0.92845 1.71375 1.12552 0.99066 1.27167 1.71463 1.14772 1.07332 1.17344 1.29412 1.01413 1.03556 0.91944 1.20568 0.91130 0.86209 1.01594 1.62075 1.01198 1.42935 1.15892 1.19921 0.96748 0.83616 0.93169 1.21085 1.34159 1.08045 0.91939 0.91978 1.24959 0.95061 0.95244 0.99018 1.69937 1.36414 1.11645 1.35441 0.86568 0.78655 0.77565 0.84706 1.20195 1.21297 1.20099 1.22767 0.92615 1.00979 0.92956 1.23550 1.07205 0.94597 1.00539 1.22974 0.95233 1.00278 1.02639 1.83774 1.56423 1.05139 1.11227 0.91971 0.92283 0.91331 0.89486 0.88784 0.87289 0.91954 0.98510 0.93547 0.92717 0.86926 0.87392 0.89934 0.89655 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.90 37.16 0.37 -0.80 16 2 C -0.04 -0.36 6.54 -27.88 -0.18 -0.54 16 3 C -0.04 -0.55 6.78 -13.30 -0.09 -0.64 16 4 N -0.26 -4.42 11.66 32.57 0.38 -4.04 16 5 N -0.27 -4.92 10.52 32.58 0.34 -4.58 16 6 C 0.02 0.27 6.33 -13.30 -0.08 0.19 16 7 C 0.14 2.58 5.40 -4.98 -0.03 2.56 16 8 N -0.50 -10.53 4.64 -229.52 -1.07 -11.60 16 9 C 0.19 4.68 3.38 -4.98 -0.02 4.66 16 10 C -0.51 -13.66 8.58 -34.44 -0.30 -13.96 16 11 H 0.06 1.61 7.57 -52.49 -0.40 1.22 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -25.58 13.29 55.43 0.74 -24.84 16 14 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.02 0.33 5.83 -67.71 -0.39 -0.07 16 19 C -0.22 -4.07 9.56 -26.73 -0.26 -4.33 16 20 C -0.17 -3.16 9.91 -26.74 -0.26 -3.42 16 21 S 0.19 2.70 23.04 -107.50 -2.48 0.22 16 22 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.11 2.07 7.21 -51.93 -0.37 1.69 16 28 H 0.06 1.17 8.12 -51.93 -0.42 0.75 16 29 H 0.00 -0.08 7.82 -51.93 -0.41 -0.48 16 30 H 0.05 1.23 5.63 -51.93 -0.29 0.94 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.11 2.18 6.43 -51.93 -0.33 1.85 16 33 H 0.11 2.23 6.02 -51.93 -0.31 1.92 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.10 1.96 7.47 -51.93 -0.39 1.57 16 LS Contribution 313.23 15.07 4.72 4.72 Total: -1.00 -29.54 313.23 -8.74 -38.28 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.02 Total: 0.89 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -1.34 Total: -14.84 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.39 Total: -45.06 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -2.48 Total: 0.22 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.54 -8.74 -38.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702785323.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.635 kcal (2) G-P(sol) polarization free energy of solvation -29.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds