Wall clock time and date at job start Mon Mar 30 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47132 * 240.00273 * 2 1 3 5 5 C 1.50693 * 109.47333 * 174.99791 * 4 2 1 6 6 H 1.08001 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00459 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99627 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00357 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47316 * 90.00032 * 9 7 5 11 11 H 1.48504 * 109.47122 * 210.00366 * 9 7 5 12 12 H 1.48498 * 109.46804 * 330.00051 * 9 7 5 13 13 N 1.46894 * 109.47378 * 120.00176 * 2 1 3 14 14 C 1.47483 * 110.99666 * 33.20184 * 13 2 1 15 15 C 1.53515 * 87.93088 * 221.29888 * 14 13 2 16 16 O 1.42900 * 114.17056 * 139.67320 * 15 14 13 17 17 C 1.42902 * 113.99874 * 116.16017 * 16 15 14 18 18 C 1.52999 * 109.46838 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47140 * 60.00239 * 18 17 16 20 20 F 1.39907 * 109.47088 * 179.97438 * 18 17 16 21 21 F 1.39898 * 109.47408 * 300.00018 * 18 17 16 22 22 C 1.47479 * 110.99897 * 297.23303 * 13 2 1 23 23 H 1.08998 * 109.47090 * 170.11496 * 1 2 3 24 24 H 1.08994 * 109.47290 * 290.11413 * 1 2 3 25 25 H 1.09002 * 109.47334 * 50.11681 * 1 2 3 26 26 H 1.09002 * 109.47328 * 295.00108 * 4 2 1 27 27 H 1.08998 * 109.47133 * 54.99733 * 4 2 1 28 28 H 0.97000 * 120.00105 * 179.97438 * 8 7 5 29 29 H 1.08997 * 113.47883 * 336.05790 * 14 13 2 30 30 H 1.08995 * 113.48065 * 106.53317 * 14 13 2 31 31 H 1.09007 * 114.33986 * 272.36350 * 15 14 13 32 32 H 1.08997 * 109.47324 * 299.99713 * 17 16 15 33 33 H 1.08999 * 109.47639 * 59.99840 * 17 16 15 34 34 H 1.09000 * 113.47541 * 253.46726 * 22 13 2 35 35 H 1.08996 * 113.47885 * 23.87407 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0861 -0.5393 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8377 -3.2996 9 14 6.0921 -1.0622 -2.4363 10 1 6.7001 -2.2148 -1.7242 11 1 6.5296 -1.0703 -3.8554 12 1 6.5266 0.2030 -1.7915 13 7 2.0197 -0.6925 1.1993 14 6 1.1097 -1.7866 1.5864 15 6 1.3057 -1.3580 3.0475 16 8 0.1133 -1.3984 3.8340 17 6 0.1564 -2.3416 4.9067 18 6 -1.1649 -2.2985 5.6770 19 9 -2.2183 -2.6209 4.8145 20 9 -1.1230 -3.2223 6.7269 21 9 -1.3619 -1.0134 6.1936 22 6 1.6019 0.0135 2.4249 23 1 -0.3633 -1.0124 -0.1764 24 1 -0.3633 0.3534 0.9649 25 1 -0.3634 0.6590 -0.7886 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0607 -2.2444 -4.0350 29 1 0.0896 -1.6506 1.2273 30 1 1.5054 -2.7784 1.3681 31 1 2.1620 -1.8190 3.5399 32 1 0.3102 -3.3428 4.5043 33 1 0.9767 -2.0903 5.5790 34 1 2.4148 0.5473 2.9171 35 1 0.7138 0.6307 2.2891 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707109026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:03 Heat of formation + Delta-G solvation = -155.828700 kcal Electronic energy + Delta-G solvation = -20762.337366 eV Core-core repulsion = 16961.186612 eV Total energy + Delta-G solvation = -3801.150754 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.30302 -47.86955 -47.75066 -40.39811 -37.46097 -33.69421 -31.82536 -29.87908 -27.42892 -26.32414 -25.62011 -23.51951 -23.07176 -20.65137 -18.87311 -18.80303 -18.66591 -17.86431 -17.01584 -16.23897 -15.84269 -15.26396 -14.78271 -14.63792 -14.48967 -14.35248 -14.22429 -13.94875 -13.93446 -13.85453 -13.23885 -13.12689 -12.33291 -12.18502 -11.80729 -11.74087 -11.31008 -11.28837 -10.95004 -10.76440 -10.63941 -10.34758 -9.96143 -9.62737 -9.26507 -9.06297 -8.30758 -8.15488 -5.91249 -3.89795 2.25071 3.10818 3.37586 3.43404 3.47349 3.59572 3.75184 4.23145 4.46809 4.54019 4.55385 4.72746 4.83413 4.98846 5.34756 5.46678 5.57274 5.62760 5.74519 5.84971 5.90873 6.03118 6.15871 6.28341 6.51879 6.81711 6.86159 7.04965 7.44552 7.73776 7.87683 8.08166 8.53824 9.15611 9.72088 11.20770 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037095 B = 0.003738 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.638782 B = 7488.366683 C = 7696.909956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.052 3.948 3 H 0.073 0.927 4 C 0.036 3.964 5 C -0.494 4.494 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.903 5.903 9 Si 0.891 3.109 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.433 5.433 14 C -0.026 4.026 15 C 0.054 3.946 16 O -0.362 6.362 17 C 0.018 3.982 18 C 0.460 3.540 19 F -0.176 7.176 20 F -0.180 7.180 21 F -0.177 7.177 22 C -0.010 4.010 23 H 0.059 0.941 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.017 0.983 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.518 -0.908 17.792 19.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.056 4.056 3 H 0.091 0.909 4 C -0.002 4.002 5 C -0.533 4.533 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.544 5.544 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.156 5.156 14 C -0.155 4.155 15 C -0.003 4.003 16 O -0.280 6.280 17 C -0.061 4.061 18 C 0.406 3.594 19 F -0.157 7.157 20 F -0.161 7.161 21 F -0.159 7.159 22 C -0.139 4.139 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.122 0.878 32 H 0.115 0.885 33 H 0.114 0.886 34 H 0.104 0.896 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.962 -0.984 17.427 19.185 hybrid contribution 0.160 0.013 0.075 0.177 sum -7.802 -0.971 17.502 19.187 Atomic orbital electron populations 1.22569 0.98885 1.01898 1.00964 1.22353 0.90870 0.98983 0.93393 0.90892 1.19072 0.96350 0.95221 0.89522 1.21163 0.91796 1.33224 1.07111 0.92256 1.25008 0.98133 0.95780 0.95922 1.69963 1.35281 1.36801 1.12331 0.86607 0.86246 0.78350 0.76823 1.20880 1.21545 1.20006 1.69323 1.40894 1.05114 1.00258 1.24585 0.98999 0.99141 0.92764 1.24127 0.86199 0.99404 0.90597 1.87975 1.39356 1.58394 1.42257 1.23552 0.93168 0.97457 0.91924 1.20280 0.87356 0.73730 0.78048 1.93223 1.60459 1.92432 1.69605 1.93202 1.96721 1.66811 1.59387 1.93211 1.95929 1.39069 1.87644 1.24227 1.00510 0.95592 0.93552 0.92166 0.93244 0.92286 0.96483 0.96211 0.93260 0.89127 0.89613 0.87799 0.88475 0.88627 0.89579 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 7.72 37.16 0.29 -2.82 16 2 C 0.05 1.05 2.36 -67.72 -0.16 0.89 16 3 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 4 C 0.04 0.90 4.57 -27.89 -0.13 0.78 16 5 C -0.49 -13.88 8.84 -34.44 -0.30 -14.19 16 6 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.43 -8.00 6.06 -236.62 -1.43 -9.44 16 14 C -0.03 -0.41 7.10 -7.54 -0.05 -0.47 16 15 C 0.05 0.70 4.66 -26.20 -0.12 0.57 16 16 O -0.36 -4.40 10.28 -35.23 -0.36 -4.77 16 17 C 0.02 0.16 5.74 37.16 0.21 0.37 16 18 C 0.46 4.58 3.32 37.16 0.12 4.71 16 19 F -0.18 -2.05 17.26 2.25 0.04 -2.01 16 20 F -0.18 -1.69 17.32 2.25 0.04 -1.65 16 21 F -0.18 -1.99 17.26 2.25 0.04 -1.95 16 22 C -0.01 -0.14 7.38 -7.55 -0.06 -0.20 16 23 H 0.06 1.01 6.51 -51.93 -0.34 0.68 16 24 H 0.05 0.74 5.84 -51.93 -0.30 0.44 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.02 0.46 8.06 -51.93 -0.42 0.04 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.09 1.43 4.83 -51.93 -0.25 1.18 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.10 1.15 7.88 -51.93 -0.41 0.75 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.08 1.11 5.98 -51.93 -0.31 0.80 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -30.89 301.59 -6.25 -37.13 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -4.53 Total: -3.32 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.30 Total: -8.97 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.70 Total: -35.94 kcal Atomic # 8 Polarization: -4.40 SS G_CDS: -0.36 Total: -4.77 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.12 Total: -5.61 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.89 -6.25 -37.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707109026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.694 kcal (2) G-P(sol) polarization free energy of solvation -30.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds