Wall clock time and date at job start Mon Mar 30 2020 06:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47143 * 2 1 4 4 C 1.53001 * 109.47132 * 240.00273 * 2 1 3 5 5 C 1.50693 * 109.47333 * 174.99791 * 4 2 1 6 6 H 1.08001 * 119.99724 * 0.02562 * 5 4 2 7 7 C 1.37879 * 120.00459 * 179.97438 * 5 4 2 8 8 N 1.31513 * 119.99627 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00357 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47316 * 90.00032 * 9 7 5 11 11 H 1.48504 * 109.47122 * 210.00366 * 9 7 5 12 12 H 1.48498 * 109.46804 * 330.00051 * 9 7 5 13 13 N 1.46894 * 109.47378 * 120.00176 * 2 1 3 14 14 C 1.47483 * 110.99666 * 33.20184 * 13 2 1 15 15 C 1.53515 * 87.93088 * 221.29888 * 14 13 2 16 16 O 1.42900 * 114.17056 * 139.67320 * 15 14 13 17 17 C 1.42902 * 113.99874 * 116.16017 * 16 15 14 18 18 C 1.52999 * 109.46838 * 179.97438 * 17 16 15 19 19 F 1.39905 * 109.47140 * 60.00239 * 18 17 16 20 20 F 1.39907 * 109.47088 * 179.97438 * 18 17 16 21 21 F 1.39898 * 109.47408 * 300.00018 * 18 17 16 22 22 C 1.47479 * 110.99897 * 297.23303 * 13 2 1 23 23 H 1.08998 * 109.47090 * 170.11496 * 1 2 3 24 24 H 1.08994 * 109.47290 * 290.11413 * 1 2 3 25 25 H 1.09002 * 109.47334 * 50.11681 * 1 2 3 26 26 H 1.09002 * 109.47328 * 295.00108 * 4 2 1 27 27 H 1.08998 * 109.47133 * 54.99733 * 4 2 1 28 28 H 0.97000 * 120.00105 * 179.97438 * 8 7 5 29 29 H 1.08997 * 113.47883 * 336.05790 * 14 13 2 30 30 H 1.08995 * 113.48065 * 106.53317 * 14 13 2 31 31 H 1.09007 * 114.33986 * 272.36350 * 15 14 13 32 32 H 1.08997 * 109.47324 * 299.99713 * 17 16 15 33 33 H 1.08999 * 109.47639 * 59.99840 * 17 16 15 34 34 H 1.09000 * 113.47541 * 253.46726 * 22 13 2 35 35 H 1.08996 * 113.47885 * 23.87407 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5418 -0.6148 -1.3128 6 1 4.0789 -0.0861 -0.5393 7 6 4.2304 -1.1934 -2.3579 8 7 3.5764 -1.8377 -3.2996 9 14 6.0921 -1.0622 -2.4363 10 1 6.7001 -2.2148 -1.7242 11 1 6.5296 -1.0703 -3.8554 12 1 6.5266 0.2030 -1.7915 13 7 2.0197 -0.6925 1.1993 14 6 1.1097 -1.7866 1.5864 15 6 1.3057 -1.3580 3.0475 16 8 0.1133 -1.3984 3.8340 17 6 0.1564 -2.3416 4.9067 18 6 -1.1649 -2.2985 5.6770 19 9 -2.2183 -2.6209 4.8145 20 9 -1.1230 -3.2223 6.7269 21 9 -1.3619 -1.0134 6.1936 22 6 1.6019 0.0135 2.4249 23 1 -0.3633 -1.0124 -0.1764 24 1 -0.3633 0.3534 0.9649 25 1 -0.3634 0.6590 -0.7886 26 1 1.7516 -1.7715 -1.2057 27 1 1.6053 -0.2617 -2.1370 28 1 4.0607 -2.2444 -4.0350 29 1 0.0896 -1.6506 1.2273 30 1 1.5054 -2.7784 1.3681 31 1 2.1620 -1.8190 3.5399 32 1 0.3102 -3.3428 4.5043 33 1 0.9767 -2.0903 5.5790 34 1 2.4148 0.5473 2.9171 35 1 0.7138 0.6307 2.2891 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707109026.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:03 Heat of formation + Delta-G solvation = -177.386263 kcal Electronic energy + Delta-G solvation = -20763.272172 eV Core-core repulsion = 16961.186612 eV Total energy + Delta-G solvation = -3802.085560 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.09476 -48.64499 -48.58424 -41.62730 -38.47030 -35.53550 -33.63719 -30.72888 -29.31213 -27.61098 -26.82047 -25.03780 -24.26262 -22.00283 -20.06496 -19.64953 -19.60131 -18.70957 -18.41414 -18.07350 -16.92753 -16.53181 -16.22980 -15.74588 -15.52485 -15.35872 -15.14065 -15.02700 -14.75944 -14.74726 -14.53067 -14.45824 -13.94376 -13.81088 -13.36356 -12.95078 -12.77992 -12.57340 -12.45986 -12.35887 -12.22579 -11.98179 -11.56261 -11.16582 -11.08287 -10.61490 -10.50189 -9.56080 -8.11310 -6.17375 1.42697 1.43721 1.47234 1.54700 2.27439 2.47194 2.85501 3.01646 3.18477 3.28742 3.38927 3.48743 3.97617 4.08561 4.12742 4.17732 4.20904 4.36379 4.42349 4.56477 4.69066 4.81854 4.86604 4.94309 5.14200 5.23113 5.39391 5.57782 5.74434 5.89815 5.91799 6.22610 6.43362 6.96508 7.49074 9.00965 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037095 B = 0.003738 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.638782 B = 7488.366683 C = 7696.909956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.061 3.939 3 H 0.067 0.933 4 C 0.042 3.958 5 C -0.506 4.506 6 H 0.059 0.941 7 C -0.006 4.006 8 N -0.941 5.941 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.265 1.265 13 N -0.466 5.466 14 C -0.034 4.034 15 C 0.081 3.919 16 O -0.376 6.376 17 C 0.014 3.986 18 C 0.460 3.540 19 F -0.189 7.189 20 F -0.176 7.176 21 F -0.186 7.186 22 C -0.008 4.008 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.061 0.939 26 H -0.011 1.011 27 H -0.008 1.008 28 H 0.259 0.741 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.128 0.872 32 H 0.117 0.883 33 H 0.125 0.875 34 H 0.099 0.901 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 -0.702 19.711 21.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.047 4.047 3 H 0.085 0.915 4 C 0.004 3.996 5 C -0.544 4.544 6 H 0.077 0.923 7 C -0.202 4.202 8 N -0.583 5.583 9 Si 0.786 3.214 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.189 1.189 13 N -0.189 5.189 14 C -0.163 4.163 15 C 0.023 3.977 16 O -0.294 6.294 17 C -0.064 4.064 18 C 0.406 3.594 19 F -0.170 7.170 20 F -0.157 7.157 21 F -0.168 7.168 22 C -0.137 4.137 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.008 0.992 27 H 0.010 0.990 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.093 0.907 31 H 0.146 0.854 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.117 0.883 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.224 -0.773 19.371 20.688 hybrid contribution -0.133 -0.081 -0.476 0.501 sum -7.357 -0.854 18.895 20.294 Atomic orbital electron populations 1.22436 0.96457 1.01904 1.02407 1.22028 0.92769 0.97788 0.92158 0.91500 1.18914 0.95343 0.93926 0.91393 1.21507 0.93212 1.32762 1.06928 0.92302 1.25898 1.03211 0.95464 0.95591 1.70099 1.37263 1.37866 1.13051 0.85514 0.80183 0.78768 0.76936 1.20154 1.21209 1.18932 1.69178 1.42205 1.06684 1.00836 1.24645 0.98306 0.97937 0.95428 1.23834 0.87060 0.97551 0.89216 1.87929 1.39010 1.59360 1.43085 1.23821 0.93184 0.97838 0.91558 1.20465 0.87494 0.73357 0.78058 1.93200 1.61279 1.92505 1.70034 1.93210 1.96691 1.66606 1.59223 1.93195 1.96014 1.39750 1.87791 1.24251 1.01073 0.96548 0.91809 0.92583 0.90875 0.91998 0.99217 0.98962 0.93195 0.89311 0.90713 0.85421 0.86554 0.85682 0.88273 0.90127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.74 7.72 71.98 0.56 -5.19 16 2 C 0.06 2.47 2.36 44.92 0.11 2.58 16 3 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 4 C 0.04 2.18 4.57 29.85 0.14 2.32 16 5 C -0.51 -28.80 8.84 25.60 0.23 -28.57 16 6 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 7 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 8 N -0.94 -57.91 13.29 21.45 0.28 -57.63 16 9 Si 0.96 45.11 29.54 68.60 2.03 47.14 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 13 N -0.47 -16.83 6.06 -902.92 -5.47 -22.30 16 14 C -0.03 -1.05 7.10 83.58 0.59 -0.46 16 15 C 0.08 1.86 4.66 30.94 0.14 2.00 16 16 O -0.38 -8.04 10.28 -148.98 -1.53 -9.57 16 17 C 0.01 0.20 5.74 71.98 0.41 0.61 16 18 C 0.46 8.17 3.32 71.98 0.24 8.41 16 19 F -0.19 -4.12 17.26 44.97 0.78 -3.34 16 20 F -0.18 -2.93 17.32 44.97 0.78 -2.15 16 21 F -0.19 -3.83 17.26 44.97 0.78 -3.05 16 22 C -0.01 -0.22 7.38 83.57 0.62 0.39 16 23 H 0.06 1.89 6.51 -2.39 -0.02 1.87 16 24 H 0.07 2.06 5.84 -2.39 -0.01 2.05 16 25 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 26 H -0.01 -0.60 8.06 -2.39 -0.02 -0.62 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.09 2.73 4.83 -2.39 -0.01 2.72 16 30 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 31 H 0.13 2.34 7.88 -2.38 -0.02 2.32 16 32 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.08 2.11 5.98 -2.39 -0.01 2.10 16 Total: -1.00 -67.11 301.59 2.23 -64.88 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.10 Total: 3.78 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 3.49 Total: -17.76 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -5.19 Total: -79.93 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: -1.53 Total: -9.57 kcal Atomic # 9 Polarization: -10.87 SS G_CDS: 2.33 Total: -8.54 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.11 2.23 -64.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707109026.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.503 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds