Wall clock time and date at job start Mon Mar 30 2020 04:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.47475 * 110.99985 * 265.97275 * 12 11 10 14 14 C 1.53511 * 87.93426 * 221.29619 * 13 12 11 15 15 O 1.42898 * 114.17091 * 272.37815 * 14 13 12 16 16 C 1.42900 * 114.00142 * 243.83771 * 15 14 13 17 17 C 1.52998 * 109.47213 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.46843 * 60.00068 * 17 16 15 19 19 F 1.39900 * 109.46878 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47211 * 300.00136 * 17 16 15 21 21 C 1.47476 * 110.99984 * 169.99752 * 12 11 10 22 22 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 24 24 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 25 25 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 26 26 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 27 27 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 28 28 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 29 29 H 1.09003 * 113.47338 * 336.06018 * 13 12 11 30 30 H 1.09004 * 113.47887 * 106.52716 * 13 12 11 31 31 H 1.08999 * 114.34662 * 139.67973 * 14 13 12 32 32 H 1.08993 * 109.46848 * 300.00448 * 16 15 14 33 33 H 1.09005 * 109.46750 * 60.00026 * 16 15 14 34 34 H 1.08999 * 113.48232 * 253.47012 * 21 12 11 35 35 H 1.08997 * 113.47737 * 23.93974 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 7 6.0415 -4.0213 0.0150 13 6 6.3089 -4.4808 1.3906 14 6 7.5824 -5.1533 0.8591 15 8 7.3831 -6.4823 0.3733 16 6 8.0838 -7.4832 1.1144 17 6 7.7983 -8.8592 0.5093 18 9 8.2254 -8.8806 -0.8227 19 9 8.4847 -9.8390 1.2346 20 9 6.4241 -9.1160 0.5626 21 6 7.4960 -4.0686 -0.2239 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6845 -0.8913 24 1 3.8746 -0.6756 0.8886 25 1 3.6580 -3.1457 0.9010 26 1 3.6588 -3.1546 -0.8790 27 1 5.9150 -2.1270 -0.8841 28 1 5.9150 -2.1179 0.8958 29 1 6.5064 -3.6678 2.0893 30 1 5.5680 -5.1877 1.7641 31 1 8.4473 -5.0603 1.5159 32 1 9.1543 -7.2828 1.0733 33 1 7.7506 -7.4668 2.1521 34 1 7.7612 -4.4263 -1.2188 35 1 8.0103 -3.1457 0.0439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707160184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:41 Heat of formation + Delta-G solvation = -165.744870 kcal Electronic energy + Delta-G solvation = -20067.232762 eV Core-core repulsion = 16265.652011 eV Total energy + Delta-G solvation = -3801.580751 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.36937 -47.94198 -47.80323 -40.45409 -37.43852 -34.19986 -32.05429 -30.23090 -28.66121 -26.13341 -25.45070 -23.63856 -22.24245 -20.34971 -20.03488 -18.88819 -18.77661 -18.13163 -16.89162 -16.65228 -16.03039 -15.69772 -15.05127 -14.78124 -14.57367 -14.28537 -14.24850 -14.10051 -13.99148 -13.98313 -13.83559 -13.25081 -12.78809 -12.63841 -12.08170 -11.85793 -11.63321 -11.36324 -11.20875 -10.91847 -10.65263 -10.00381 -9.89661 -9.67960 -9.54203 -9.15698 -8.75425 -8.51555 -6.01514 -3.99199 2.09475 2.92472 3.31240 3.38161 3.41225 3.46174 3.64112 3.93940 4.11012 4.25137 4.46690 4.50101 4.60259 4.65516 4.99473 5.14003 5.29195 5.32831 5.36747 5.57300 5.73856 5.74990 6.13326 6.29679 6.51640 6.61155 6.67056 6.95909 7.16345 7.37638 7.48029 7.82718 8.58364 9.04649 9.60901 11.12197 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.042152 B = 0.003028 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.095790 B = 9244.641292 C = 9606.855912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.092 4.092 11 C 0.016 3.984 12 N -0.459 5.459 13 C -0.018 4.018 14 C 0.058 3.942 15 O -0.335 6.335 16 C 0.015 3.985 17 C 0.462 3.538 18 F -0.176 7.176 19 F -0.179 7.179 20 F -0.172 7.172 21 C -0.004 4.004 22 H 0.262 0.738 23 H 0.010 0.990 24 H 0.012 0.988 25 H 0.052 0.948 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.277 -14.705 4.288 27.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.130 4.130 11 C -0.112 4.112 12 N -0.181 5.181 13 C -0.147 4.147 14 C 0.000 4.000 15 O -0.253 6.253 16 C -0.063 4.063 17 C 0.407 3.593 18 F -0.157 7.157 19 F -0.161 7.161 20 F -0.154 7.154 21 C -0.133 4.133 22 H 0.072 0.928 23 H 0.028 0.972 24 H 0.031 0.969 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.111 0.889 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.499 -14.989 3.662 26.463 hybrid contribution 0.884 1.346 0.617 1.725 sum 22.384 -13.642 4.279 26.560 Atomic orbital electron populations 1.69919 1.06295 1.26810 1.51378 1.25049 0.94737 0.99157 0.94692 0.86759 0.80258 0.83652 0.78460 1.20308 1.21438 1.19153 1.21161 0.89533 0.94489 1.50431 0.90996 1.19567 0.97229 0.92382 0.95958 1.21334 0.90535 0.99319 1.01783 1.22920 0.99347 0.88330 1.00634 1.69062 1.12220 1.21334 1.15464 1.24442 0.97306 0.99806 0.93190 1.23319 0.97866 0.81634 0.97201 1.88034 1.69428 1.14272 1.53540 1.23601 0.99791 0.85576 0.97377 1.20157 0.74773 0.87630 0.76694 1.93223 1.89605 1.96890 1.35994 1.93204 1.79866 1.65233 1.77780 1.93246 1.31020 1.95043 1.96076 1.24121 0.91955 0.96532 1.00736 0.92782 0.97152 0.96950 0.92914 0.92019 0.91244 0.94127 0.90104 0.88926 0.89497 0.88627 0.88491 0.88855 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.44 13.96 55.43 0.77 -27.66 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.96 27.47 -169.99 -4.67 17.29 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.86 16 9 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 10 C -0.09 -1.89 5.48 -26.73 -0.15 -2.04 16 11 C 0.02 0.25 4.82 -3.82 -0.02 0.24 16 12 N -0.46 -6.68 6.33 -244.66 -1.55 -8.23 16 13 C -0.02 -0.21 7.55 -7.55 -0.06 -0.27 16 14 C 0.06 0.54 4.66 -26.20 -0.12 0.42 16 15 O -0.33 -3.60 10.28 -35.23 -0.36 -3.96 16 16 C 0.02 0.11 5.74 37.16 0.21 0.32 16 17 C 0.46 4.19 3.32 37.16 0.12 4.32 16 18 F -0.18 -1.87 17.26 2.25 0.04 -1.83 16 19 F -0.18 -1.51 17.32 2.25 0.04 -1.47 16 20 F -0.17 -1.97 17.26 2.25 0.04 -1.93 16 21 C 0.00 -0.05 7.52 -7.54 -0.06 -0.10 16 22 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 23 H 0.01 0.24 7.58 -51.93 -0.39 -0.15 16 24 H 0.01 0.29 7.18 -51.93 -0.37 -0.08 16 25 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 27 H 0.07 1.10 8.08 -51.93 -0.42 0.68 16 28 H 0.04 0.61 7.30 -51.93 -0.38 0.23 16 29 H 0.08 0.83 7.42 -51.93 -0.39 0.45 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.09 0.51 7.88 -51.93 -0.41 0.10 16 32 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.73 7.91 -51.93 -0.41 0.32 16 LS Contribution 307.38 15.07 4.63 4.63 Total: -1.00 -33.15 307.38 -6.56 -39.71 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -4.89 Total: -5.31 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -0.61 Total: -11.24 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.78 Total: -35.89 kcal Atomic # 8 Polarization: -3.60 SS G_CDS: -0.36 Total: -3.96 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.12 Total: -5.23 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -33.15 -6.56 -39.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707160184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.035 kcal (2) G-P(sol) polarization free energy of solvation -33.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds