Wall clock time and date at job start Mon Mar 30 2020 04:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 N 1.46907 * 109.47007 * 180.02562 * 11 10 9 13 13 C 1.47475 * 110.99985 * 265.97275 * 12 11 10 14 14 C 1.53511 * 87.93426 * 221.29619 * 13 12 11 15 15 O 1.42898 * 114.17091 * 272.37815 * 14 13 12 16 16 C 1.42900 * 114.00142 * 243.83771 * 15 14 13 17 17 C 1.52998 * 109.47213 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.46843 * 60.00068 * 17 16 15 19 19 F 1.39900 * 109.46878 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47211 * 300.00136 * 17 16 15 21 21 C 1.47476 * 110.99984 * 169.99752 * 12 11 10 22 22 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 24 24 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 25 25 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 26 26 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 27 27 H 1.09000 * 109.47441 * 299.99910 * 11 10 9 28 28 H 1.08994 * 109.47235 * 60.00181 * 11 10 9 29 29 H 1.09003 * 113.47338 * 336.06018 * 13 12 11 30 30 H 1.09004 * 113.47887 * 106.52716 * 13 12 11 31 31 H 1.08999 * 114.34662 * 139.67973 * 14 13 12 32 32 H 1.08993 * 109.46848 * 300.00448 * 16 15 14 33 33 H 1.09005 * 109.46750 * 60.00026 * 16 15 14 34 34 H 1.08999 * 113.48232 * 253.47012 * 21 12 11 35 35 H 1.08997 * 113.47737 * 23.93974 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 6 4.0217 -2.6364 0.0086 11 6 5.5517 -2.6362 0.0085 12 7 6.0415 -4.0213 0.0150 13 6 6.3089 -4.4808 1.3906 14 6 7.5824 -5.1533 0.8591 15 8 7.3831 -6.4823 0.3733 16 6 8.0838 -7.4832 1.1144 17 6 7.7983 -8.8592 0.5093 18 9 8.2254 -8.8806 -0.8227 19 9 8.4847 -9.8390 1.2346 20 9 6.4241 -9.1160 0.5626 21 6 7.4960 -4.0686 -0.2239 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.6845 -0.8913 24 1 3.8746 -0.6756 0.8886 25 1 3.6580 -3.1457 0.9010 26 1 3.6588 -3.1546 -0.8790 27 1 5.9150 -2.1270 -0.8841 28 1 5.9150 -2.1179 0.8958 29 1 6.5064 -3.6678 2.0893 30 1 5.5680 -5.1877 1.7641 31 1 8.4473 -5.0603 1.5159 32 1 9.1543 -7.2828 1.0733 33 1 7.7506 -7.4668 2.1521 34 1 7.7612 -4.4263 -1.2188 35 1 8.0103 -3.1457 0.0439 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707160184.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:40 Heat of formation + Delta-G solvation = -190.441590 kcal Electronic energy + Delta-G solvation = -20068.303692 eV Core-core repulsion = 16265.652011 eV Total energy + Delta-G solvation = -3802.651682 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.09745 -48.65004 -48.59236 -41.30405 -38.23354 -36.00999 -34.01756 -31.16710 -29.93871 -27.16652 -26.79133 -24.28430 -23.78743 -21.80583 -21.13462 -19.61254 -19.50238 -18.99779 -18.74382 -17.51985 -16.94402 -16.68195 -16.22042 -15.98495 -15.56046 -15.39382 -15.19435 -15.03591 -14.96830 -14.76876 -14.74902 -14.63292 -14.35787 -13.63152 -13.57239 -13.11372 -12.76762 -12.59461 -12.52641 -12.26252 -11.98253 -11.72426 -11.39293 -11.36857 -11.22003 -10.77285 -10.69286 -9.73673 -8.29931 -6.35190 1.35869 1.38597 1.47331 1.50731 2.26315 2.36508 2.83588 3.01025 3.05002 3.10592 3.35646 3.51630 3.86844 4.05348 4.08367 4.18071 4.26246 4.33617 4.47755 4.64791 4.67362 4.76879 4.78466 4.88207 4.94665 5.11171 5.41557 5.52927 5.63744 5.66644 5.92201 6.16672 6.29839 6.73382 7.29420 8.87551 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.042152 B = 0.003028 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.095790 B = 9244.641292 C = 9606.855912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.001 4.001 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.538 4.538 8 H 0.023 0.977 9 C -0.008 4.008 10 C -0.084 4.084 11 C 0.029 3.971 12 N -0.499 5.499 13 C -0.025 4.025 14 C 0.074 3.926 15 O -0.369 6.369 16 C 0.017 3.983 17 C 0.456 3.544 18 F -0.188 7.188 19 F -0.176 7.176 20 F -0.192 7.192 21 C -0.003 4.003 22 H 0.267 0.733 23 H 0.020 0.980 24 H 0.024 0.976 25 H 0.038 0.962 26 H 0.037 0.963 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.131 0.869 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.810 -13.457 5.241 29.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.198 4.198 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.576 4.576 8 H 0.041 0.959 9 C -0.046 4.046 10 C -0.123 4.123 11 C -0.099 4.099 12 N -0.222 5.222 13 C -0.154 4.154 14 C 0.017 3.983 15 O -0.288 6.288 16 C -0.061 4.061 17 C 0.402 3.598 18 F -0.170 7.170 19 F -0.157 7.157 20 F -0.174 7.174 21 C -0.132 4.132 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.117 0.883 30 H 0.092 0.908 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 25.054 -13.772 4.617 28.960 hybrid contribution -0.305 0.800 0.309 0.910 sum 24.749 -12.972 4.926 28.374 Atomic orbital electron populations 1.70092 1.08541 1.28287 1.52675 1.26151 0.95722 1.03961 0.93927 0.85526 0.79535 0.77449 0.79293 1.19108 1.20908 1.16401 1.21540 0.92502 0.92925 1.50592 0.95861 1.19496 0.93607 0.94868 0.96633 1.21159 0.94497 0.96639 0.99969 1.22663 0.95378 0.90146 1.01700 1.68980 1.15326 1.20009 1.17864 1.24561 0.98361 1.00337 0.92155 1.23304 0.97939 0.80549 0.96541 1.87982 1.70539 1.15460 1.54787 1.23840 1.01529 0.83127 0.97613 1.20602 0.73856 0.88992 0.76351 1.93194 1.89625 1.97019 1.37167 1.93207 1.79603 1.65370 1.77521 1.93206 1.32726 1.95293 1.96135 1.24219 0.89441 0.98348 1.01182 0.92450 0.96174 0.95731 0.94279 0.94442 0.90780 0.92318 0.88285 0.90762 0.84771 0.85131 0.86194 0.89595 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.73 13.96 21.45 0.30 -61.43 16 2 C 0.00 -0.09 5.47 84.65 0.46 0.37 16 3 Si 0.96 44.61 27.47 68.60 1.88 46.49 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 6 H -0.24 -10.12 6.53 99.48 0.65 -9.47 16 7 C -0.54 -32.44 9.66 25.60 0.25 -32.19 16 8 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 9 C -0.01 -0.39 4.04 29.85 0.12 -0.27 16 10 C -0.08 -3.51 5.48 30.59 0.17 -3.35 16 11 C 0.03 0.90 4.82 86.30 0.42 1.31 16 12 N -0.50 -13.78 6.33 -928.34 -5.88 -19.65 16 13 C -0.03 -0.53 7.55 83.58 0.63 0.10 16 14 C 0.07 1.11 4.66 30.94 0.14 1.26 16 15 O -0.37 -7.09 10.28 -148.98 -1.53 -8.62 16 16 C 0.02 0.18 5.74 71.98 0.41 0.60 16 17 C 0.46 7.72 3.32 71.98 0.24 7.96 16 18 F -0.19 -3.89 17.26 44.97 0.78 -3.11 16 19 F -0.18 -2.69 17.32 44.97 0.78 -1.91 16 20 F -0.19 -4.37 17.26 44.97 0.78 -3.59 16 21 C 0.00 -0.06 7.52 83.58 0.63 0.57 16 22 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 23 H 0.02 0.92 7.58 -2.39 -0.02 0.90 16 24 H 0.02 1.12 7.18 -2.39 -0.02 1.10 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 28 H 0.06 1.56 7.30 -2.39 -0.02 1.55 16 29 H 0.10 1.70 7.42 -2.39 -0.02 1.68 16 30 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.13 0.78 7.88 -2.39 -0.02 0.76 16 32 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.11 1.44 7.91 -2.39 -0.02 1.42 16 Total: -1.00 -75.48 307.38 1.60 -73.88 By element: Atomic # 1 Polarization: 0.54 SS G_CDS: 1.03 Total: 1.57 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 3.47 Total: -23.63 kcal Atomic # 7 Polarization: -75.51 SS G_CDS: -5.58 Total: -81.09 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -1.53 Total: -8.62 kcal Atomic # 9 Polarization: -10.94 SS G_CDS: 2.33 Total: -8.61 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Total: -75.48 1.60 -73.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707160184.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.560 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds