Wall clock time and date at job start Mon Mar 30 2020 06:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46661 * 2 1 4 4 C 1.50698 * 109.47148 * 119.99986 * 2 1 3 5 5 H 1.07994 * 120.00075 * 120.00404 * 4 2 1 6 6 C 1.37875 * 120.00003 * 300.00278 * 4 2 1 7 7 N 1.31522 * 120.00129 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00203 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47037 * 89.99736 * 8 6 4 10 10 H 1.48503 * 109.47464 * 210.00039 * 8 6 4 11 11 H 1.48505 * 109.47072 * 330.00133 * 8 6 4 12 12 N 1.46901 * 109.47347 * 240.00048 * 2 1 3 13 13 C 1.46980 * 110.99737 * 69.99892 * 12 2 1 14 14 C 1.53464 * 109.11282 * 164.02429 * 13 12 2 15 15 C 1.50999 * 108.00947 * 48.40623 * 14 13 12 16 16 S 1.75641 * 126.98236 * 164.69528 * 15 14 13 17 17 C 1.70970 * 90.23729 * 180.09014 * 16 15 14 18 18 C 1.50702 * 124.92011 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.46692 * 270.02422 * 18 17 16 20 20 N 1.28999 * 110.16949 * 0.03031 * 17 16 15 21 21 C 1.32325 * 117.79858 * 359.93244 * 20 17 16 22 22 C 1.46949 * 110.99927 * 305.45161 * 12 2 1 23 23 H 1.08995 * 109.46934 * 60.00255 * 1 2 3 24 24 H 1.09003 * 109.46661 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47058 * 299.99886 * 1 2 3 26 26 H 0.97000 * 119.99682 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.53544 * 44.13407 * 13 12 2 28 28 H 1.09002 * 109.53064 * 283.91275 * 13 12 2 29 29 H 1.09002 * 109.76413 * 168.05289 * 14 13 12 30 30 H 1.09001 * 109.76061 * 288.76660 * 14 13 12 31 31 H 1.08997 * 109.47032 * 30.02224 * 18 17 16 32 32 H 1.08994 * 109.47524 * 150.02280 * 18 17 16 33 33 H 1.00905 * 111.00038 * 180.02562 * 19 18 17 34 34 H 1.00904 * 111.00461 * 303.95087 * 19 18 17 35 35 H 1.09003 * 109.62097 * 296.72217 * 22 12 2 36 36 H 1.09006 * 109.62024 * 57.26771 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4859 -2.5663 3.7119 12 7 2.0198 -0.6925 -1.1994 13 6 1.7528 0.0977 -2.4097 14 6 2.6101 -0.4429 -3.5620 15 6 2.4501 -1.9440 -3.5985 16 16 2.8923 -3.0221 -4.9127 17 6 2.3407 -4.3634 -4.0075 18 6 2.3746 -5.7946 -4.4782 19 7 1.1225 -6.1093 -5.1790 20 7 1.8901 -3.9730 -2.8635 21 6 1.9280 -2.6779 -2.5947 22 6 1.4451 -2.0412 -1.3004 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7086 1.1612 3.4844 27 1 2.0057 1.1420 -2.2263 28 1 0.6978 0.0178 -2.6717 29 1 2.2729 -0.0133 -4.5053 30 1 3.6565 -0.1878 -3.3941 31 1 3.2159 -5.9340 -5.1571 32 1 2.4869 -6.4569 -3.6199 33 1 1.1204 -7.0644 -5.5044 34 1 0.3231 -5.9262 -4.5911 35 1 1.7721 -2.6428 -0.4522 36 1 0.3571 -1.9758 -1.3082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709753912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:31 Heat of formation + Delta-G solvation = 50.311449 kcal Electronic energy + Delta-G solvation = -18293.173834 eV Core-core repulsion = 15517.864350 eV Total energy + Delta-G solvation = -2775.309484 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.88540 -37.44778 -34.93784 -33.47543 -31.63140 -29.64640 -28.20701 -26.28295 -25.29499 -24.41962 -22.65006 -21.65829 -19.64231 -17.95831 -17.63129 -16.39197 -16.03161 -15.36915 -15.01252 -14.62664 -14.58118 -13.94395 -13.80599 -13.32399 -13.00424 -12.62928 -12.60865 -12.21717 -12.01048 -11.70695 -11.41975 -10.95642 -10.86057 -10.75624 -10.53388 -10.38321 -10.11446 -9.82953 -9.43151 -9.06247 -8.91420 -8.90152 -8.39833 -8.23247 -7.23245 -6.02469 -4.06304 0.93818 1.56477 1.99902 3.04297 3.31889 3.38154 3.42482 4.02184 4.40711 4.51825 4.80709 4.99939 5.13566 5.26139 5.30075 5.37101 5.42500 5.75033 5.80109 6.07881 6.16773 6.24760 6.33560 6.40931 6.59992 6.74545 6.75966 6.83391 7.05618 7.12563 7.38494 7.66344 7.81250 7.97512 8.10827 8.32139 8.53156 8.99494 9.59201 11.04536 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.005147 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.432638 B = 5438.259490 C = 6035.873857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.214 3.786 3 H 0.044 0.956 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.531 5.531 13 C 0.057 3.943 14 C -0.035 4.035 15 C -0.212 4.212 16 S 0.116 5.884 17 C 0.033 3.967 18 C 0.144 3.856 19 N -0.844 5.844 20 N -0.462 5.462 21 C 0.071 3.929 22 C 0.143 3.857 23 H 0.008 0.992 24 H 0.032 0.968 25 H 0.090 0.910 26 H 0.260 0.740 27 H 0.079 0.921 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.058 0.942 33 H 0.347 0.653 34 H 0.349 0.651 35 H 0.100 0.900 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -8.084 -14.821 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.108 3.892 3 H 0.062 0.938 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.255 5.255 13 C -0.074 4.074 14 C -0.076 4.076 15 C -0.333 4.333 16 S 0.371 5.629 17 C -0.245 4.245 18 C 0.010 3.990 19 N -0.376 5.376 20 N -0.178 5.178 21 C -0.060 4.060 22 C 0.013 3.987 23 H 0.027 0.973 24 H 0.051 0.949 25 H 0.109 0.891 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.118 0.882 36 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.603 -7.782 -15.799 17.803 hybrid contribution -1.023 -0.748 2.324 2.647 sum 1.580 -8.530 -13.475 16.026 Atomic orbital electron populations 1.22436 1.00680 0.99507 1.00747 1.19347 0.89868 0.94490 0.85486 0.93782 1.21100 1.30641 1.12605 0.89582 0.91935 1.24908 0.95133 0.95113 0.98984 1.69881 1.36952 1.23085 1.23459 0.86520 0.78503 0.80077 0.82453 1.20684 1.21356 1.19916 1.62223 1.59273 1.01180 1.02835 1.22088 0.96551 0.98037 0.90686 1.20306 1.01873 0.86560 0.98820 1.26153 1.08906 1.01689 0.96541 1.83487 1.59676 0.99475 1.20221 1.26499 1.04123 1.00517 0.93403 1.20154 0.93820 0.87773 0.97212 1.58705 1.03998 1.30018 1.44909 1.65775 1.17415 1.16957 1.17616 1.21222 1.00448 0.86386 0.97967 1.20702 0.96557 0.90644 0.90804 0.97302 0.94929 0.89101 0.92975 0.90213 0.95098 0.90829 0.89639 0.89149 0.92430 0.83944 0.83819 0.88182 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.26 37.16 0.31 -3.82 16 2 C 0.21 5.25 2.30 -68.86 -0.16 5.09 16 3 H 0.04 1.17 7.87 -51.93 -0.41 0.76 16 4 C -0.50 -13.54 8.01 -34.44 -0.28 -13.81 16 5 H 0.06 1.72 7.06 -52.49 -0.37 1.35 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16 8 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.53 -11.37 4.53 -228.18 -1.03 -12.40 16 13 C 0.06 1.01 4.99 -3.54 -0.02 0.99 16 14 C -0.04 -0.54 6.50 -27.50 -0.18 -0.72 16 15 C -0.21 -3.55 6.47 -35.36 -0.23 -3.78 16 16 S 0.12 1.59 23.16 -107.50 -2.49 -0.90 16 17 C 0.03 0.48 6.91 -13.47 -0.09 0.39 16 18 C 0.14 1.55 7.36 -4.98 -0.04 1.51 16 19 N -0.84 -8.02 9.61 -11.41 -0.11 -8.13 16 20 N -0.46 -8.23 10.52 -7.24 -0.08 -8.31 16 21 C 0.07 1.34 6.88 -82.87 -0.57 0.77 16 22 C 0.14 2.99 5.09 -4.25 -0.02 2.97 16 23 H 0.01 0.17 7.07 -51.93 -0.37 -0.19 16 24 H 0.03 0.75 6.27 -51.93 -0.33 0.43 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 27 H 0.08 1.36 7.82 -51.93 -0.41 0.96 16 28 H 0.03 0.55 7.32 -51.93 -0.38 0.17 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.35 2.30 9.08 -39.29 -0.36 1.94 16 34 H 0.35 3.53 8.99 -39.29 -0.35 3.17 16 35 H 0.10 2.27 6.93 -51.93 -0.36 1.91 16 36 H 0.05 1.11 6.07 -51.93 -0.32 0.79 16 LS Contribution 299.48 15.07 4.51 4.51 Total: -1.00 -29.31 299.48 -9.74 -39.06 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.78 Total: 3.18 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -1.37 Total: -8.87 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.59 Total: -53.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.49 Total: -0.90 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -29.31 -9.74 -39.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709753912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.367 kcal (2) G-P(sol) polarization free energy of solvation -29.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds