Wall clock time and date at job start Mon Mar 30 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46661 * 2 1 4 4 C 1.50698 * 109.47148 * 119.99986 * 2 1 3 5 5 H 1.07994 * 120.00075 * 120.00404 * 4 2 1 6 6 C 1.37875 * 120.00003 * 300.00278 * 4 2 1 7 7 N 1.31522 * 120.00129 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00203 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47037 * 89.99736 * 8 6 4 10 10 H 1.48503 * 109.47464 * 210.00039 * 8 6 4 11 11 H 1.48505 * 109.47072 * 330.00133 * 8 6 4 12 12 N 1.46901 * 109.47347 * 240.00048 * 2 1 3 13 13 C 1.46980 * 110.99737 * 69.99892 * 12 2 1 14 14 C 1.53464 * 109.11282 * 164.02429 * 13 12 2 15 15 C 1.50999 * 108.00947 * 48.40623 * 14 13 12 16 16 S 1.75641 * 126.98236 * 164.69528 * 15 14 13 17 17 C 1.70970 * 90.23729 * 180.09014 * 16 15 14 18 18 C 1.50702 * 124.92011 * 179.97438 * 17 16 15 19 19 N 1.46898 * 109.46692 * 270.02422 * 18 17 16 20 20 N 1.28999 * 110.16949 * 0.03031 * 17 16 15 21 21 C 1.32325 * 117.79858 * 359.93244 * 20 17 16 22 22 C 1.46949 * 110.99927 * 305.45161 * 12 2 1 23 23 H 1.08995 * 109.46934 * 60.00255 * 1 2 3 24 24 H 1.09003 * 109.46661 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47058 * 299.99886 * 1 2 3 26 26 H 0.97000 * 119.99682 * 180.02562 * 7 6 4 27 27 H 1.08999 * 109.53544 * 44.13407 * 13 12 2 28 28 H 1.09002 * 109.53064 * 283.91275 * 13 12 2 29 29 H 1.09002 * 109.76413 * 168.05289 * 14 13 12 30 30 H 1.09001 * 109.76061 * 288.76660 * 14 13 12 31 31 H 1.08997 * 109.47032 * 30.02224 * 18 17 16 32 32 H 1.08994 * 109.47524 * 150.02280 * 18 17 16 33 33 H 1.00905 * 111.00038 * 180.02562 * 19 18 17 34 34 H 1.00904 * 111.00461 * 303.95087 * 19 18 17 35 35 H 1.09003 * 109.62097 * 296.72217 * 22 12 2 36 36 H 1.09006 * 109.62024 * 57.26771 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3213 -1.1203 4.0080 9 1 3.6296 -0.5459 4.4124 10 1 1.3430 -0.9493 5.1121 11 1 2.4859 -2.5663 3.7119 12 7 2.0198 -0.6925 -1.1994 13 6 1.7528 0.0977 -2.4097 14 6 2.6101 -0.4429 -3.5620 15 6 2.4501 -1.9440 -3.5985 16 16 2.8923 -3.0221 -4.9127 17 6 2.3407 -4.3634 -4.0075 18 6 2.3746 -5.7946 -4.4782 19 7 1.1225 -6.1093 -5.1790 20 7 1.8901 -3.9730 -2.8635 21 6 1.9280 -2.6779 -2.5947 22 6 1.4451 -2.0412 -1.3004 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7086 1.1612 3.4844 27 1 2.0057 1.1420 -2.2263 28 1 0.6978 0.0178 -2.6717 29 1 2.2729 -0.0133 -4.5053 30 1 3.6565 -0.1878 -3.3941 31 1 3.2159 -5.9340 -5.1571 32 1 2.4869 -6.4569 -3.6199 33 1 1.1204 -7.0644 -5.5044 34 1 0.3231 -5.9262 -4.5911 35 1 1.7721 -2.6428 -0.4522 36 1 0.3571 -1.9758 -1.3082 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709753912.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:30 Heat of formation + Delta-G solvation = 28.366807 kcal Electronic energy + Delta-G solvation = -18294.125425 eV Core-core repulsion = 15517.864350 eV Total energy + Delta-G solvation = -2776.261075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.21908 -38.98059 -36.04834 -35.06202 -33.33058 -31.02652 -29.90551 -27.45787 -27.26056 -25.94898 -23.96044 -23.05670 -21.27614 -19.25111 -18.93338 -18.27140 -17.14675 -16.74883 -16.60854 -16.13482 -15.73935 -15.44905 -15.11245 -14.79579 -14.58686 -13.96705 -13.93652 -13.68987 -13.31337 -13.26763 -13.04109 -12.72504 -12.68020 -12.50843 -12.19931 -12.08048 -11.99998 -11.57675 -10.93340 -10.58973 -10.49680 -10.13679 -9.77878 -9.49231 -8.93490 -8.11930 -6.22222 -0.25245 0.41027 0.78680 1.41352 1.42242 1.52426 1.73792 2.42035 2.83719 3.17637 3.35154 3.74582 3.83443 3.89868 4.06786 4.36110 4.39193 4.46765 4.53515 4.58169 4.69748 4.77571 4.84074 4.90760 4.93524 5.04999 5.10581 5.21498 5.48791 5.68119 5.77254 5.98519 6.14655 6.39692 6.48976 6.65798 6.82733 6.88969 7.46768 8.93964 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026299 B = 0.005147 C = 0.004638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.432638 B = 5438.259490 C = 6035.873857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.219 3.781 3 H 0.021 0.979 4 C -0.516 4.516 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.275 1.275 12 N -0.539 5.539 13 C 0.054 3.946 14 C -0.029 4.029 15 C -0.228 4.228 16 S 0.190 5.810 17 C 0.028 3.972 18 C 0.144 3.856 19 N -0.845 5.845 20 N -0.496 5.496 21 C 0.042 3.958 22 C 0.154 3.846 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.065 0.935 26 H 0.262 0.738 27 H 0.084 0.916 28 H 0.030 0.970 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.364 0.636 34 H 0.345 0.655 35 H 0.068 0.932 36 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.539 -8.995 -16.954 19.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.112 3.888 3 H 0.038 0.962 4 C -0.554 4.554 5 H 0.067 0.933 6 C -0.182 4.182 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.200 1.200 12 N -0.263 5.263 13 C -0.076 4.076 14 C -0.069 4.069 15 C -0.350 4.350 16 S 0.447 5.553 17 C -0.250 4.250 18 C 0.010 3.990 19 N -0.379 5.379 20 N -0.212 5.212 21 C -0.089 4.089 22 C 0.023 3.977 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.048 0.952 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.133 0.867 32 H 0.078 0.922 33 H 0.180 0.820 34 H 0.157 0.843 35 H 0.086 0.914 36 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.456 -8.708 -17.963 20.259 hybrid contribution -1.264 -0.512 2.861 3.170 sum 2.192 -9.220 -15.102 17.829 Atomic orbital electron populations 1.22222 1.00195 0.99062 1.00369 1.19099 0.90097 0.93177 0.86449 0.96156 1.21315 1.30666 1.12389 0.91065 0.93255 1.25600 0.95321 0.95780 1.01538 1.69988 1.37628 1.24025 1.24061 0.85603 0.78165 0.78875 0.79252 1.20106 1.20705 1.19957 1.62093 1.59326 1.01661 1.03232 1.22197 0.97279 0.97982 0.90113 1.20332 1.01717 0.85838 0.99010 1.26417 1.08202 1.02842 0.97534 1.83173 1.57840 0.97026 1.17289 1.27231 1.02403 1.02634 0.92710 1.20322 0.95198 0.85471 0.97990 1.58700 1.03289 1.31504 1.44383 1.65740 1.19291 1.16654 1.19530 1.20880 1.02825 0.87468 0.97746 1.20357 0.95731 0.90111 0.91483 0.95329 0.95314 0.91604 0.92866 0.89736 0.95190 0.87384 0.88970 0.86661 0.92247 0.81971 0.84295 0.91352 0.94210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.75 8.26 71.98 0.59 -7.16 16 2 C 0.22 11.09 2.30 44.17 0.10 11.19 16 3 H 0.02 1.13 7.87 -2.39 -0.02 1.11 16 4 C -0.52 -28.81 8.01 25.60 0.20 -28.61 16 5 H 0.05 2.83 7.06 -2.91 -0.02 2.81 16 6 C 0.02 0.91 5.30 84.65 0.45 1.36 16 7 N -0.92 -52.44 11.32 21.45 0.24 -52.20 16 8 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 12 N -0.54 -23.58 4.53 -875.84 -3.97 -27.54 16 13 C 0.05 1.89 4.99 86.44 0.43 2.32 16 14 C -0.03 -0.82 6.50 30.10 0.20 -0.62 16 15 C -0.23 -7.24 6.47 25.01 0.16 -7.08 16 16 S 0.19 4.62 23.16 -56.49 -1.31 3.31 16 17 C 0.03 0.77 6.91 88.53 0.61 1.39 16 18 C 0.14 2.70 7.36 85.56 0.63 3.33 16 19 N -0.85 -13.90 9.61 -190.02 -1.83 -15.73 16 20 N -0.50 -17.45 10.52 -176.81 -1.86 -19.31 16 21 C 0.04 1.59 6.88 42.16 0.29 1.88 16 22 C 0.15 6.65 5.09 86.00 0.44 7.08 16 23 H 0.03 1.22 7.07 -2.39 -0.02 1.21 16 24 H 0.03 1.37 6.27 -2.39 -0.01 1.36 16 25 H 0.07 3.54 6.07 -2.39 -0.01 3.53 16 26 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.08 2.84 7.82 -2.39 -0.02 2.82 16 28 H 0.03 1.05 7.32 -2.39 -0.02 1.03 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.36 3.81 9.08 -89.69 -0.81 3.00 16 34 H 0.34 6.37 8.99 -89.69 -0.81 5.56 16 35 H 0.07 3.30 6.93 -2.39 -0.02 3.29 16 36 H 0.04 1.77 6.07 -2.38 -0.01 1.76 16 Total: -1.00 -64.25 299.48 -3.08 -67.33 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -0.50 Total: 12.60 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: 4.11 Total: -14.92 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -7.41 Total: -114.78 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.31 Total: 3.31 kcal Total: -64.25 -3.08 -67.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709753912.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.697 kcal (2) G-P(sol) polarization free energy of solvation -64.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds