Wall clock time and date at job start Mon Mar 30 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46712 * 2 1 4 4 C 1.50692 * 109.47131 * 120.00188 * 2 1 3 5 5 H 1.08002 * 120.00075 * 119.99767 * 4 2 1 6 6 C 1.37882 * 120.00130 * 299.99613 * 4 2 1 7 7 N 1.31513 * 119.99782 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99906 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.46852 * 89.99613 * 8 6 4 10 10 H 1.48498 * 109.46983 * 329.99921 * 8 6 4 11 11 H 1.48502 * 109.46906 * 209.99911 * 8 6 4 12 12 N 1.46903 * 109.46923 * 240.00260 * 2 1 3 13 13 C 1.48559 * 111.00045 * 177.28834 * 12 2 1 14 14 C 1.54374 * 104.59303 * 200.95925 * 13 12 2 15 15 H 1.09005 * 110.41005 * 142.79529 * 14 13 12 16 16 C 1.52999 * 110.32268 * 264.95410 * 14 13 12 17 17 O 1.42903 * 109.47044 * 290.63818 * 16 14 13 18 18 C 1.54259 * 105.06178 * 23.85336 * 14 13 12 19 19 H 1.09002 * 110.32235 * 241.10166 * 18 14 13 20 20 C 1.53003 * 110.32426 * 118.89994 * 18 14 13 21 21 F 1.39899 * 109.46879 * 302.90320 * 20 18 14 22 22 F 1.39900 * 109.47457 * 62.90586 * 20 18 14 23 23 F 1.39896 * 109.47015 * 182.90912 * 20 18 14 24 24 C 1.48559 * 110.99949 * 61.86950 * 12 2 1 25 25 H 1.08999 * 109.47076 * 55.04443 * 1 2 3 26 26 H 1.09000 * 109.47035 * 175.05045 * 1 2 3 27 27 H 1.09004 * 109.46770 * 295.05064 * 1 2 3 28 28 H 0.97004 * 119.99626 * 180.02562 * 7 6 4 29 29 H 1.08999 * 110.40685 * 319.74025 * 13 12 2 30 30 H 1.09001 * 110.41174 * 82.17895 * 13 12 2 31 31 H 1.09001 * 109.47040 * 50.63953 * 16 14 13 32 32 H 1.09007 * 109.46924 * 170.63878 * 16 14 13 33 33 H 0.96707 * 113.99495 * 179.97438 * 17 16 14 34 34 H 1.09005 * 110.41070 * 277.81579 * 24 12 2 35 35 H 1.08994 * 110.41468 * 40.14388 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6249 1.2791 2.6542 9 1 -0.8026 0.8727 2.6998 10 1 0.8472 2.1765 1.4921 11 1 0.9761 1.9951 3.9069 12 7 2.0197 -0.6925 -1.1995 13 6 3.5033 -0.6557 -1.2671 14 6 3.8311 -0.9057 -2.7548 15 1 4.6867 -0.3040 -3.0618 16 6 4.1133 -2.3902 -2.9946 17 8 5.3491 -2.7468 -2.3719 18 6 2.5663 -0.4698 -3.5227 19 1 2.1464 -1.3134 -4.0706 20 6 2.8951 0.6768 -4.4810 21 9 3.4473 1.7420 -3.7616 22 9 3.8139 0.2350 -5.4390 23 9 1.7247 1.1018 -5.1186 24 6 1.5806 0.0069 -2.4345 25 1 -0.3633 0.5888 -0.8423 26 1 -0.3633 -1.0238 -0.0887 27 1 -0.3633 0.4352 0.9310 28 1 1.9036 -0.5279 4.4375 29 1 3.8739 0.3206 -0.9549 30 1 3.9317 -1.4424 -0.6460 31 1 3.3064 -2.9868 -2.5689 32 1 4.1785 -2.5791 -4.0662 33 1 5.5917 -3.6763 -2.4832 34 1 0.5614 -0.2809 -2.6924 35 1 1.6484 1.0869 -2.3043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709887594.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:09 Heat of formation + Delta-G solvation = -194.839116 kcal Electronic energy + Delta-G solvation = -21949.786173 eV Core-core repulsion = 18146.943800 eV Total energy + Delta-G solvation = -3802.842373 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.10966 -47.60118 -47.55735 -39.16037 -36.47194 -34.30191 -31.94105 -29.91770 -29.24185 -26.04199 -24.65294 -24.13723 -21.76653 -20.14525 -19.77536 -18.41314 -18.13111 -17.74617 -16.97784 -16.56474 -15.44691 -15.08152 -14.68709 -14.49262 -14.33621 -14.04411 -13.94860 -13.80883 -13.68759 -13.56858 -13.15925 -12.69560 -12.44188 -12.26424 -11.97741 -11.71630 -11.45973 -11.04885 -10.99808 -10.77647 -10.57472 -10.39802 -10.16916 -9.79599 -9.51641 -9.13410 -8.59847 -7.70428 -6.09912 -4.09136 2.73280 3.23572 3.34168 3.36266 3.72617 3.84754 4.00486 4.36397 4.39669 4.72469 4.82165 4.89047 5.01617 5.21859 5.29069 5.41654 5.51612 5.73721 5.85679 5.94054 6.06099 6.24831 6.29072 6.39455 6.46141 6.68618 6.77241 7.09972 7.40985 7.72255 7.76759 7.82056 8.56871 8.97121 9.51313 11.02850 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.006762 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.567219 B = 4139.527549 C = 4952.884494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.172 3.828 3 H 0.003 0.997 4 C -0.506 4.506 5 H 0.083 0.917 6 C 0.071 3.929 7 N -0.897 5.897 8 Si 0.885 3.115 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.296 1.296 12 N -0.488 5.488 13 C 0.058 3.942 14 C -0.089 4.089 15 H 0.085 0.915 16 C 0.091 3.909 17 O -0.568 6.568 18 C -0.135 4.135 19 H 0.122 0.878 20 C 0.456 3.544 21 F -0.179 7.179 22 F -0.185 7.185 23 F -0.184 7.184 24 C 0.034 3.966 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.045 0.955 28 H 0.264 0.736 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.041 0.959 33 H 0.378 0.622 34 H 0.090 0.910 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.281 -0.140 -16.349 16.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.065 3.935 3 H 0.020 0.980 4 C -0.544 4.544 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.535 5.535 8 Si 0.715 3.285 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.224 1.224 12 N -0.213 5.213 13 C -0.069 4.069 14 C -0.108 4.108 15 H 0.104 0.896 16 C 0.013 3.987 17 O -0.373 6.373 18 C -0.155 4.155 19 H 0.140 0.860 20 C 0.402 3.598 21 F -0.161 7.161 22 F -0.167 7.167 23 F -0.165 7.165 24 C -0.094 4.094 25 H 0.046 0.954 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.225 0.775 34 H 0.108 0.892 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.064 -0.019 -15.946 15.981 hybrid contribution -0.357 1.327 -0.181 1.386 sum 0.707 1.308 -16.127 16.195 Atomic orbital electron populations 1.22175 0.98261 1.01238 0.98672 1.19913 0.91784 0.92836 0.89010 0.97968 1.20887 1.32075 1.13711 0.87708 0.89934 1.24919 0.95805 0.96557 0.95810 1.69876 1.45509 1.40202 0.97889 0.86903 0.80739 0.83824 0.77006 1.20495 1.19421 1.22386 1.65506 1.06699 1.48292 1.00757 1.22939 0.89432 1.02017 0.92556 1.21939 0.95054 0.96488 0.97302 0.89624 1.22112 0.86650 0.94701 0.95263 1.86488 1.40005 1.31887 1.78951 1.23257 0.99906 0.95726 0.96625 0.86004 1.20571 0.74177 0.84424 0.80622 1.93188 1.85915 1.59318 1.77669 1.93168 1.67790 1.89304 1.66421 1.93172 1.48573 1.91316 1.83474 1.23131 0.97978 0.97679 0.90657 0.95439 0.91940 0.93698 0.92566 0.93644 0.88348 0.92015 0.94123 0.77496 0.89161 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 8.47 37.16 0.31 -2.80 16 2 C 0.17 3.99 1.41 -68.86 -0.10 3.89 16 3 H 0.00 0.07 7.04 -51.93 -0.37 -0.30 16 4 C -0.51 -13.90 8.71 -34.44 -0.30 -14.20 16 5 H 0.08 2.47 7.37 -52.49 -0.39 2.09 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 8 Si 0.88 21.74 24.41 -169.99 -4.15 17.59 16 9 H -0.28 -6.63 6.83 56.52 0.39 -6.25 16 10 H -0.27 -6.39 6.53 56.52 0.37 -6.02 16 11 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 12 N -0.49 -9.58 5.19 -223.41 -1.16 -10.74 16 13 C 0.06 1.10 5.25 -2.19 -0.01 1.08 16 14 C -0.09 -1.30 2.62 -89.24 -0.23 -1.53 16 15 H 0.09 1.26 7.39 -51.93 -0.38 0.88 16 16 C 0.09 1.15 6.14 37.16 0.23 1.38 16 17 O -0.57 -7.58 13.32 -35.23 -0.47 -8.05 16 18 C -0.14 -1.79 2.72 -89.24 -0.24 -2.03 16 19 H 0.12 1.33 7.71 -51.93 -0.40 0.93 16 20 C 0.46 6.04 2.51 37.16 0.09 6.13 16 21 F -0.18 -2.67 16.05 2.25 0.04 -2.63 16 22 F -0.19 -2.38 17.06 2.25 0.04 -2.34 16 23 F -0.18 -2.41 17.10 2.25 0.04 -2.37 16 24 C 0.03 0.54 4.72 -2.19 -0.01 0.53 16 25 H 0.03 0.50 7.25 -51.93 -0.38 0.12 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 27 H 0.04 1.01 3.21 -51.93 -0.17 0.84 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.05 0.91 7.93 -51.93 -0.41 0.49 16 30 H 0.10 2.04 7.02 -51.93 -0.36 1.68 16 31 H 0.06 0.81 8.13 -51.93 -0.42 0.39 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.38 3.18 9.12 45.56 0.42 3.59 16 34 H 0.09 1.31 7.79 -51.93 -0.40 0.91 16 35 H 0.05 0.81 7.13 -51.93 -0.37 0.44 16 LS Contribution 287.25 15.07 4.33 4.33 Total: -1.00 -30.60 287.25 -4.59 -35.19 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -3.67 Total: 0.94 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -0.36 Total: -5.62 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: -0.39 Total: -37.03 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.47 Total: -8.05 kcal Atomic # 9 Polarization: -7.46 SS G_CDS: 0.11 Total: -7.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.15 Total: 17.59 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.60 -4.59 -35.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709887594.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.649 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds