Wall clock time and date at job start Mon Mar 30 2020 06:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.46712 * 2 1 4 4 C 1.50692 * 109.47131 * 120.00188 * 2 1 3 5 5 H 1.08002 * 120.00075 * 119.99767 * 4 2 1 6 6 C 1.37882 * 120.00130 * 299.99613 * 4 2 1 7 7 N 1.31513 * 119.99782 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 119.99906 * 0.02562 * 6 4 2 9 9 H 1.48496 * 109.46852 * 89.99613 * 8 6 4 10 10 H 1.48498 * 109.46983 * 329.99921 * 8 6 4 11 11 H 1.48502 * 109.46906 * 209.99911 * 8 6 4 12 12 N 1.46903 * 109.46923 * 240.00260 * 2 1 3 13 13 C 1.48559 * 111.00045 * 177.28834 * 12 2 1 14 14 C 1.54374 * 104.59303 * 200.95925 * 13 12 2 15 15 H 1.09005 * 110.41005 * 142.79529 * 14 13 12 16 16 C 1.52999 * 110.32268 * 264.95410 * 14 13 12 17 17 O 1.42903 * 109.47044 * 290.63818 * 16 14 13 18 18 C 1.54259 * 105.06178 * 23.85336 * 14 13 12 19 19 H 1.09002 * 110.32235 * 241.10166 * 18 14 13 20 20 C 1.53003 * 110.32426 * 118.89994 * 18 14 13 21 21 F 1.39899 * 109.46879 * 302.90320 * 20 18 14 22 22 F 1.39900 * 109.47457 * 62.90586 * 20 18 14 23 23 F 1.39896 * 109.47015 * 182.90912 * 20 18 14 24 24 C 1.48559 * 110.99949 * 61.86950 * 12 2 1 25 25 H 1.08999 * 109.47076 * 55.04443 * 1 2 3 26 26 H 1.09000 * 109.47035 * 175.05045 * 1 2 3 27 27 H 1.09004 * 109.46770 * 295.05064 * 1 2 3 28 28 H 0.97004 * 119.99626 * 180.02562 * 7 6 4 29 29 H 1.08999 * 110.40685 * 319.74025 * 13 12 2 30 30 H 1.09001 * 110.41174 * 82.17895 * 13 12 2 31 31 H 1.09001 * 109.47040 * 50.63953 * 16 14 13 32 32 H 1.09007 * 109.46924 * 170.63878 * 16 14 13 33 33 H 0.96707 * 113.99495 * 179.97438 * 17 16 14 34 34 H 1.09005 * 110.41070 * 277.81579 * 24 12 2 35 35 H 1.08994 * 110.41468 * 40.14388 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6249 1.2791 2.6542 9 1 -0.8026 0.8727 2.6998 10 1 0.8472 2.1765 1.4921 11 1 0.9761 1.9951 3.9069 12 7 2.0197 -0.6925 -1.1995 13 6 3.5033 -0.6557 -1.2671 14 6 3.8311 -0.9057 -2.7548 15 1 4.6867 -0.3040 -3.0618 16 6 4.1133 -2.3902 -2.9946 17 8 5.3491 -2.7468 -2.3719 18 6 2.5663 -0.4698 -3.5227 19 1 2.1464 -1.3134 -4.0706 20 6 2.8951 0.6768 -4.4810 21 9 3.4473 1.7420 -3.7616 22 9 3.8139 0.2350 -5.4390 23 9 1.7247 1.1018 -5.1186 24 6 1.5806 0.0069 -2.4345 25 1 -0.3633 0.5888 -0.8423 26 1 -0.3633 -1.0238 -0.0887 27 1 -0.3633 0.4352 0.9310 28 1 1.9036 -0.5279 4.4375 29 1 3.8739 0.3206 -0.9549 30 1 3.9317 -1.4424 -0.6460 31 1 3.3064 -2.9868 -2.5689 32 1 4.1785 -2.5791 -4.0662 33 1 5.5917 -3.6763 -2.4832 34 1 0.5614 -0.2809 -2.6924 35 1 1.6484 1.0869 -2.3043 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709887594.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:08 Heat of formation + Delta-G solvation = -219.383181 kcal Electronic energy + Delta-G solvation = -21950.850483 eV Core-core repulsion = 18146.943800 eV Total energy + Delta-G solvation = -3803.906683 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.15799 -48.63824 -48.61541 -40.52101 -37.63732 -35.92508 -33.88608 -31.23901 -30.75779 -27.58615 -26.28064 -25.45081 -23.12364 -21.44554 -21.35567 -19.48397 -19.19502 -19.00424 -18.72498 -17.84114 -17.01899 -16.46762 -16.15562 -15.56143 -15.52841 -15.32495 -15.07151 -15.03619 -14.86347 -14.76300 -14.68127 -14.41358 -13.96266 -13.96083 -13.40437 -12.91421 -12.79452 -12.58685 -12.52412 -12.33503 -12.16933 -12.06628 -11.66379 -11.43964 -11.11207 -10.80797 -10.73443 -9.31858 -8.29558 -6.33031 1.28402 1.34280 1.43640 1.66811 2.30028 2.65736 2.75011 2.91765 3.03856 3.30261 3.37257 3.62695 3.73596 3.96174 4.19549 4.30289 4.38260 4.47017 4.59782 4.62194 4.65235 4.67447 4.81398 4.86142 4.96120 5.03679 5.15053 5.37522 5.61192 5.90810 6.06180 6.54484 6.73231 6.96960 7.31474 8.86990 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.006762 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.567219 B = 4139.527549 C = 4952.884494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.174 3.826 3 H -0.010 1.010 4 C -0.506 4.506 5 H 0.040 0.960 6 C 0.013 3.987 7 N -0.946 5.946 8 Si 0.947 3.053 9 H -0.261 1.261 10 H -0.254 1.254 11 H -0.299 1.299 12 N -0.496 5.496 13 C 0.059 3.941 14 C -0.082 4.082 15 H 0.085 0.915 16 C 0.093 3.907 17 O -0.593 6.593 18 C -0.123 4.123 19 H 0.157 0.843 20 C 0.462 3.538 21 F -0.192 7.192 22 F -0.180 7.180 23 F -0.180 7.180 24 C 0.031 3.969 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.034 0.966 28 H 0.266 0.734 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.399 0.601 34 H 0.114 0.886 35 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.107 0.463 -18.919 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.066 3.934 3 H 0.008 0.992 4 C -0.544 4.544 5 H 0.058 0.942 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.774 3.226 9 H -0.187 1.187 10 H -0.178 1.178 11 H -0.227 1.227 12 N -0.220 5.220 13 C -0.069 4.069 14 C -0.101 4.101 15 H 0.104 0.896 16 C 0.016 3.984 17 O -0.402 6.402 18 C -0.143 4.143 19 H 0.174 0.826 20 C 0.408 3.592 21 F -0.173 7.173 22 F -0.161 7.161 23 F -0.161 7.161 24 C -0.097 4.097 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.052 0.948 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.249 0.751 34 H 0.132 0.868 35 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.324 0.566 -18.553 18.565 hybrid contribution 0.180 1.058 0.587 1.224 sum -0.144 1.624 -17.966 18.040 Atomic orbital electron populations 1.22071 0.96166 1.02020 0.99643 1.19733 0.93325 0.91571 0.88761 0.99211 1.21129 1.30947 1.12404 0.89955 0.94213 1.25767 0.97427 0.99854 0.95399 1.70032 1.47651 1.42441 0.98546 0.85881 0.79521 0.79999 0.77156 1.18686 1.17800 1.22721 1.65382 1.06971 1.48522 1.01115 1.22803 0.89140 0.99597 0.95381 1.21861 0.95826 0.98345 0.94114 0.89644 1.22117 0.86305 0.92871 0.97147 1.86440 1.40282 1.33953 1.79485 1.23212 0.98325 0.96741 0.96037 0.82581 1.20456 0.74265 0.83900 0.80586 1.93174 1.86149 1.59976 1.78035 1.93183 1.67634 1.89180 1.66127 1.93185 1.48304 1.91260 1.83349 1.23235 0.99850 0.97151 0.89434 0.91778 0.91811 0.94765 0.92520 0.95886 0.91575 0.92563 0.90587 0.75139 0.86829 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.47 71.98 0.61 -5.09 16 2 C 0.17 8.01 1.41 44.17 0.06 8.08 16 3 H -0.01 -0.46 7.04 -2.39 -0.02 -0.48 16 4 C -0.51 -28.72 8.71 25.60 0.22 -28.50 16 5 H 0.04 2.53 7.37 -2.91 -0.02 2.51 16 6 C 0.01 0.75 5.45 84.66 0.46 1.21 16 7 N -0.95 -59.19 13.96 21.45 0.30 -58.89 16 8 Si 0.95 44.83 24.41 68.60 1.67 46.50 16 9 H -0.26 -11.59 6.83 99.48 0.68 -10.91 16 10 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 11 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 12 N -0.50 -19.12 5.19 -860.75 -4.47 -23.59 16 13 C 0.06 2.26 5.25 86.45 0.45 2.71 16 14 C -0.08 -2.28 2.62 -9.90 -0.03 -2.31 16 15 H 0.09 2.40 7.39 -2.38 -0.02 2.38 16 16 C 0.09 2.17 6.14 71.98 0.44 2.61 16 17 O -0.59 -15.27 13.32 -148.98 -1.98 -17.26 16 18 C -0.12 -2.88 2.72 -9.90 -0.03 -2.91 16 19 H 0.16 2.64 7.71 -2.39 -0.02 2.63 16 20 C 0.46 10.80 2.51 71.98 0.18 10.98 16 21 F -0.19 -5.34 16.05 44.97 0.72 -4.61 16 22 F -0.18 -4.01 17.06 44.97 0.77 -3.25 16 23 F -0.18 -4.07 17.10 44.97 0.77 -3.30 16 24 C 0.03 0.91 4.72 86.45 0.41 1.32 16 25 H 0.06 2.10 7.25 -2.39 -0.02 2.08 16 26 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.03 1.45 3.21 -2.38 -0.01 1.44 16 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.02 0.95 7.93 -2.39 -0.02 0.94 16 30 H 0.07 2.92 7.02 -2.39 -0.02 2.90 16 31 H 0.06 1.37 8.13 -2.39 -0.02 1.35 16 32 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.40 6.19 9.12 -74.05 -0.68 5.51 16 34 H 0.11 2.80 7.79 -2.38 -0.02 2.79 16 35 H 0.04 1.32 7.13 -2.39 -0.02 1.31 16 Total: -1.00 -68.31 287.25 0.93 -67.38 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.36 Total: 8.90 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 2.79 Total: -11.89 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -4.17 Total: -82.48 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -1.98 Total: -17.26 kcal Atomic # 9 Polarization: -13.42 SS G_CDS: 2.26 Total: -11.16 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.67 Total: 46.50 kcal Total: -68.31 0.93 -67.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709887594.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.004 kcal (2) G-P(sol) polarization free energy of solvation -68.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds