Wall clock time and date at job start Mon Mar 30 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.50573 * 2 1 4 4 F 1.39899 * 109.47420 * 180.08918 * 3 2 1 5 5 F 1.39899 * 109.47301 * 300.09156 * 3 2 1 6 6 F 1.39902 * 109.46943 * 60.08711 * 3 2 1 7 7 C 1.53106 * 109.54109 * 239.89704 * 2 1 3 8 8 N 1.47013 * 109.25642 * 296.88875 * 7 2 1 9 9 C 1.46893 * 111.00106 * 177.61226 * 8 7 2 10 10 C 1.53004 * 109.47285 * 189.68377 * 9 8 7 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 C 1.47020 * 110.75104 * 301.38338 * 8 7 2 20 20 C 1.53100 * 109.25846 * 58.61919 * 19 8 7 21 21 O 1.43007 * 109.51138 * 120.08738 * 2 1 3 22 22 H 1.09002 * 109.47010 * 299.90761 * 1 2 3 23 23 H 1.08996 * 109.47179 * 59.91193 * 1 2 3 24 24 H 1.09002 * 109.47112 * 179.91425 * 1 2 3 25 25 H 1.08997 * 109.50605 * 176.95778 * 7 2 1 26 26 H 1.08999 * 109.50496 * 56.82185 * 7 2 1 27 27 H 1.09000 * 109.47823 * 69.67738 * 9 8 7 28 28 H 1.09007 * 109.47029 * 309.67506 * 9 8 7 29 29 H 1.09000 * 109.47211 * 59.98987 * 10 9 8 30 30 H 1.09007 * 109.46376 * 299.99529 * 10 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.50445 * 178.54631 * 19 8 7 33 33 H 1.09000 * 109.50966 * 298.64135 * 19 8 7 34 34 H 1.09000 * 109.50685 * 63.07847 * 20 19 8 35 35 H 1.08999 * 109.51051 * 183.21698 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 9 3.4398 1.4414 -0.0021 5 9 1.5732 2.1026 -1.1412 6 9 1.5765 2.1014 1.1433 7 6 2.0421 -0.7237 -1.2483 8 7 1.6127 -2.1290 -1.2043 9 6 2.0362 -2.8469 -2.4139 10 6 1.3727 -4.2252 -2.4477 11 6 1.8067 -4.9614 -3.6889 12 1 2.4873 -4.4930 -4.3844 13 6 1.3299 -6.2305 -3.9397 14 7 0.5008 -6.8009 -3.0930 15 14 1.8617 -7.1401 -5.4822 16 1 3.0883 -7.9264 -5.1951 17 1 0.7765 -8.0565 -5.9155 18 1 2.1432 -6.1606 -6.5622 19 6 2.1204 -2.7912 0.0061 20 6 1.6075 -2.0468 1.2418 21 8 2.0076 -0.6758 1.1663 22 1 -0.3633 0.5124 0.8908 23 1 -0.3633 0.5152 -0.8892 24 1 -0.3633 -1.0277 -0.0015 25 1 3.1307 -0.6764 -1.2755 26 1 1.6340 -0.2461 -2.1390 27 1 3.1197 -2.9654 -2.4056 28 1 1.7395 -2.2793 -3.2960 29 1 0.2892 -4.1067 -2.4559 30 1 1.6694 -4.7928 -1.5656 31 1 0.1651 -7.6935 -3.2697 32 1 1.7694 -3.8228 0.0310 33 1 3.2103 -2.7776 -0.0014 34 1 0.5197 -2.1070 1.2775 35 1 2.0275 -2.4996 2.1399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712745458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:19 Heat of formation + Delta-G solvation = -197.519693 kcal Electronic energy + Delta-G solvation = -21659.755478 eV Core-core repulsion = 17856.796867 eV Total energy + Delta-G solvation = -3802.958611 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.18677 -47.70102 -47.63444 -39.99401 -36.06570 -33.28855 -32.90148 -30.14405 -28.70113 -26.56058 -25.64207 -23.84458 -22.82005 -20.49070 -19.56099 -18.64566 -18.38793 -17.96629 -16.52833 -16.20279 -15.39407 -15.08012 -14.82152 -14.54069 -14.49727 -14.21708 -14.13857 -14.07449 -13.81178 -13.79025 -13.62797 -13.02541 -12.53846 -12.27937 -12.15247 -11.68789 -11.61171 -11.44384 -11.12294 -10.96927 -10.62859 -10.52253 -10.03704 -9.83870 -9.40015 -9.21549 -8.40312 -8.01472 -6.06697 -4.09449 2.41317 3.25402 3.28100 3.34821 3.37798 3.60716 3.88004 4.27237 4.41730 4.45196 4.56262 4.75160 5.09489 5.27606 5.30182 5.32612 5.45155 5.54682 5.60830 5.68561 5.91434 6.03779 6.15200 6.18724 6.31482 6.80357 6.82840 7.21045 7.27632 7.64886 7.76969 7.96757 8.34140 8.97177 9.54923 11.04622 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.038016 B = 0.004381 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.355227 B = 6389.993742 C = 6669.789454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.079 3.921 3 C 0.469 3.531 4 F -0.177 7.177 5 F -0.174 7.174 6 F -0.176 7.176 7 C 0.027 3.973 8 N -0.528 5.528 9 C 0.063 3.937 10 C 0.029 3.971 11 C -0.524 4.524 12 H 0.054 0.946 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.013 3.987 20 C 0.064 3.936 21 O -0.367 6.367 22 H 0.069 0.931 23 H 0.078 0.922 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.026 0.974 30 H 0.017 0.983 31 H 0.261 0.739 32 H 0.104 0.896 33 H 0.041 0.959 34 H 0.069 0.931 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.222 14.193 8.182 16.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.038 3.962 3 C 0.415 3.585 4 F -0.158 7.158 5 F -0.155 7.155 6 F -0.157 7.157 7 C -0.102 4.102 8 N -0.253 5.253 9 C -0.064 4.064 10 C -0.008 4.008 11 C -0.563 4.563 12 H 0.073 0.927 13 C -0.142 4.142 14 N -0.532 5.532 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.116 4.116 20 C -0.012 4.012 21 O -0.286 6.286 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.117 0.883 25 H 0.067 0.933 26 H 0.112 0.888 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.732 14.138 8.360 16.441 hybrid contribution 1.162 -0.463 -1.066 1.643 sum 1.894 13.675 7.295 15.615 Atomic orbital electron populations 1.22329 0.91352 1.06000 1.03373 1.22446 0.96840 0.87438 0.89521 1.20109 0.75667 0.89151 0.73609 1.93189 1.29580 1.96943 1.96095 1.93188 1.88505 1.82741 1.51113 1.93179 1.88438 1.83162 1.50951 1.22667 0.99106 0.92148 0.96258 1.62352 1.59300 0.99772 1.03877 1.22416 0.97415 0.97644 0.88880 1.19095 0.96570 0.88224 0.96913 1.21158 1.27852 1.00288 1.06991 0.92745 1.24974 0.94971 0.97524 0.96699 1.69957 1.32038 1.15067 1.36126 0.86587 0.78238 0.79718 0.83413 1.20672 1.21156 1.19862 1.22876 0.98270 1.00466 0.89943 1.22896 1.00524 0.79346 0.98407 1.87972 1.75520 1.25055 1.40102 0.91236 0.90344 0.88305 0.93260 0.88776 0.95706 0.91630 0.95576 0.96453 0.92919 0.87773 0.94066 0.91285 0.87701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 7.93 37.16 0.29 -1.77 16 2 C 0.08 1.07 0.59 -90.57 -0.05 1.01 16 3 C 0.47 6.16 2.38 37.16 0.09 6.25 16 4 F -0.18 -2.48 16.68 2.25 0.04 -2.44 16 5 F -0.17 -2.17 16.35 2.25 0.04 -2.14 16 6 F -0.18 -2.32 16.75 2.25 0.04 -2.28 16 7 C 0.03 0.40 4.10 -3.71 -0.02 0.38 16 8 N -0.53 -8.90 4.10 -234.30 -0.96 -9.86 16 9 C 0.06 1.25 4.89 -3.83 -0.02 1.23 16 10 C 0.03 0.72 4.90 -27.88 -0.14 0.59 16 11 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 13 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 15 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.01 0.20 5.43 -3.71 -0.02 0.18 16 20 C 0.06 0.82 6.61 37.21 0.25 1.07 16 21 O -0.37 -5.19 10.17 -35.23 -0.36 -5.55 16 22 H 0.07 0.75 7.81 -51.93 -0.41 0.35 16 23 H 0.08 0.87 7.80 -51.93 -0.41 0.46 16 24 H 0.10 1.26 6.13 -51.93 -0.32 0.94 16 25 H 0.05 0.75 7.71 -51.93 -0.40 0.35 16 26 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 27 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 28 H 0.07 1.29 8.04 -51.93 -0.42 0.87 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.02 0.44 6.51 -51.93 -0.34 0.11 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.10 1.75 6.37 -51.93 -0.33 1.41 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.84 6.49 -51.93 -0.34 0.50 16 35 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 292.92 15.07 4.41 4.41 Total: -1.00 -28.91 292.92 -5.69 -34.60 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -4.59 Total: -3.41 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -0.03 Total: -4.16 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: -0.22 Total: -35.20 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.36 Total: -5.55 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.11 Total: -6.86 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.91 -5.69 -34.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712745458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.917 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds