Wall clock time and date at job start Mon Mar 30 2020 04:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.50573 * 2 1 4 4 F 1.39899 * 109.47420 * 180.08918 * 3 2 1 5 5 F 1.39899 * 109.47301 * 300.09156 * 3 2 1 6 6 F 1.39902 * 109.46943 * 60.08711 * 3 2 1 7 7 C 1.53106 * 109.54109 * 239.89704 * 2 1 3 8 8 N 1.47013 * 109.25642 * 296.88875 * 7 2 1 9 9 C 1.46893 * 111.00106 * 177.61226 * 8 7 2 10 10 C 1.53004 * 109.47285 * 189.68377 * 9 8 7 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 8 12 12 H 1.08002 * 119.99761 * 359.97438 * 11 10 9 13 13 C 1.37871 * 119.99694 * 180.27574 * 11 10 9 14 14 N 1.31514 * 120.00482 * 359.71466 * 13 11 10 15 15 Si 1.86801 * 119.99746 * 179.72062 * 13 11 10 16 16 H 1.48504 * 109.47209 * 89.99886 * 15 13 11 17 17 H 1.48501 * 109.47358 * 209.99377 * 15 13 11 18 18 H 1.48496 * 109.47341 * 329.99989 * 15 13 11 19 19 C 1.47020 * 110.75104 * 301.38338 * 8 7 2 20 20 C 1.53100 * 109.25846 * 58.61919 * 19 8 7 21 21 O 1.43007 * 109.51138 * 120.08738 * 2 1 3 22 22 H 1.09002 * 109.47010 * 299.90761 * 1 2 3 23 23 H 1.08996 * 109.47179 * 59.91193 * 1 2 3 24 24 H 1.09002 * 109.47112 * 179.91425 * 1 2 3 25 25 H 1.08997 * 109.50605 * 176.95778 * 7 2 1 26 26 H 1.08999 * 109.50496 * 56.82185 * 7 2 1 27 27 H 1.09000 * 109.47823 * 69.67738 * 9 8 7 28 28 H 1.09007 * 109.47029 * 309.67506 * 9 8 7 29 29 H 1.09000 * 109.47211 * 59.98987 * 10 9 8 30 30 H 1.09007 * 109.46376 * 299.99529 * 10 9 8 31 31 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 32 32 H 1.08996 * 109.50445 * 178.54631 * 19 8 7 33 33 H 1.09000 * 109.50966 * 298.64135 * 19 8 7 34 34 H 1.09000 * 109.50685 * 63.07847 * 20 19 8 35 35 H 1.08999 * 109.51051 * 183.21698 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 9 3.4398 1.4414 -0.0021 5 9 1.5732 2.1026 -1.1412 6 9 1.5765 2.1014 1.1433 7 6 2.0421 -0.7237 -1.2483 8 7 1.6127 -2.1290 -1.2043 9 6 2.0362 -2.8469 -2.4139 10 6 1.3727 -4.2252 -2.4477 11 6 1.8067 -4.9614 -3.6889 12 1 2.4873 -4.4930 -4.3844 13 6 1.3299 -6.2305 -3.9397 14 7 0.5008 -6.8009 -3.0930 15 14 1.8617 -7.1401 -5.4822 16 1 3.0883 -7.9264 -5.1951 17 1 0.7765 -8.0565 -5.9155 18 1 2.1432 -6.1606 -6.5622 19 6 2.1204 -2.7912 0.0061 20 6 1.6075 -2.0468 1.2418 21 8 2.0076 -0.6758 1.1663 22 1 -0.3633 0.5124 0.8908 23 1 -0.3633 0.5152 -0.8892 24 1 -0.3633 -1.0277 -0.0015 25 1 3.1307 -0.6764 -1.2755 26 1 1.6340 -0.2461 -2.1390 27 1 3.1197 -2.9654 -2.4056 28 1 1.7395 -2.2793 -3.2960 29 1 0.2892 -4.1067 -2.4559 30 1 1.6694 -4.7928 -1.5656 31 1 0.1651 -7.6935 -3.2697 32 1 1.7694 -3.8228 0.0310 33 1 3.2103 -2.7776 -0.0014 34 1 0.5197 -2.1070 1.2775 35 1 2.0275 -2.4996 2.1399 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712745458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:19 Heat of formation + Delta-G solvation = -215.792690 kcal Electronic energy + Delta-G solvation = -21660.547854 eV Core-core repulsion = 17856.796867 eV Total energy + Delta-G solvation = -3803.750988 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.22716 -48.72812 -48.68989 -41.15908 -37.47809 -35.08514 -34.20136 -31.87507 -29.96081 -27.69773 -27.16172 -25.31818 -24.21121 -22.09900 -20.74872 -19.71112 -19.45066 -19.07475 -18.52246 -17.35643 -16.70071 -16.50924 -16.33725 -15.85234 -15.60656 -15.44068 -15.27495 -15.11901 -15.05913 -14.85046 -14.82775 -14.44460 -14.14674 -13.79594 -13.38715 -13.10988 -12.88402 -12.84464 -12.62540 -12.49626 -12.38249 -11.87093 -11.68970 -11.40327 -11.27651 -10.82793 -10.52939 -9.40190 -8.19955 -6.30372 1.35985 1.41724 1.42195 1.53206 2.18331 2.38801 2.51193 2.81886 3.07419 3.14360 3.38018 3.47337 3.69480 3.93470 4.04246 4.22374 4.35233 4.43635 4.54505 4.58053 4.63904 4.71234 4.84560 4.87131 5.03735 5.19357 5.43579 5.61126 5.73425 5.74513 5.98107 6.02942 6.27375 6.86101 7.38783 8.91848 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.038016 B = 0.004381 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.355227 B = 6389.993742 C = 6669.789454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.080 3.920 3 C 0.474 3.526 4 F -0.183 7.183 5 F -0.169 7.169 6 F -0.174 7.174 7 C 0.028 3.972 8 N -0.532 5.532 9 C 0.079 3.921 10 C 0.038 3.962 11 C -0.545 4.545 12 H 0.058 0.942 13 C 0.006 3.994 14 N -0.929 5.929 15 Si 0.962 3.038 16 H -0.274 1.274 17 H -0.282 1.282 18 H -0.264 1.264 19 C 0.012 3.988 20 C 0.070 3.930 21 O -0.374 6.374 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.089 0.911 25 H 0.046 0.954 26 H 0.103 0.897 27 H 0.022 0.978 28 H 0.069 0.931 29 H -0.002 1.002 30 H -0.001 1.001 31 H 0.264 0.736 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.077 0.923 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.510 14.981 8.000 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.038 3.962 3 C 0.419 3.581 4 F -0.164 7.164 5 F -0.151 7.151 6 F -0.156 7.156 7 C -0.101 4.101 8 N -0.257 5.257 9 C -0.048 4.048 10 C 0.001 3.999 11 C -0.584 4.584 12 H 0.076 0.924 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.786 3.214 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.189 1.189 19 C -0.116 4.116 20 C -0.006 4.006 21 O -0.294 6.294 22 H 0.101 0.899 23 H 0.106 0.894 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.122 0.878 27 H 0.040 0.960 28 H 0.088 0.912 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.095 0.905 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.027 14.947 8.187 17.073 hybrid contribution 1.065 -0.685 -0.972 1.597 sum 2.092 14.262 7.215 16.119 Atomic orbital electron populations 1.22320 0.90084 1.05752 1.04548 1.22472 0.97757 0.87383 0.88601 1.20004 0.75362 0.88975 0.73783 1.93181 1.30116 1.96962 1.96135 1.93201 1.88393 1.82623 1.50836 1.93183 1.88382 1.83078 1.50912 1.22703 0.99021 0.90702 0.97639 1.62233 1.59534 1.00815 1.03095 1.22042 0.96579 0.95539 0.90678 1.18903 0.95015 0.90634 0.95360 1.21604 1.27891 1.00931 1.07934 0.92353 1.25866 0.94921 0.98509 0.99946 1.70080 1.33195 1.15537 1.38074 0.85500 0.77931 0.78424 0.79503 1.19925 1.20782 1.18868 1.22892 0.98047 0.99977 0.90708 1.22968 1.01137 0.78617 0.97830 1.87971 1.75805 1.25389 1.40207 0.89894 0.89423 0.89200 0.93620 0.87836 0.95961 0.91242 0.98339 0.98261 0.92750 0.89603 0.94447 0.90462 0.85102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.71 7.93 71.98 0.57 -3.14 16 2 C 0.08 1.99 0.59 -10.76 -0.01 1.99 16 3 C 0.47 11.52 2.38 71.98 0.17 11.69 16 4 F -0.18 -4.83 16.68 44.97 0.75 -4.07 16 5 F -0.17 -3.88 16.35 44.97 0.74 -3.14 16 6 F -0.17 -4.21 16.75 44.97 0.75 -3.46 16 7 C 0.03 0.79 4.10 86.32 0.35 1.14 16 8 N -0.53 -17.70 4.10 -895.19 -3.67 -21.37 16 9 C 0.08 3.14 4.89 86.31 0.42 3.56 16 10 C 0.04 1.94 4.90 29.85 0.15 2.08 16 11 C -0.55 -30.11 9.11 25.60 0.23 -29.87 16 12 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 13 C 0.01 0.33 5.46 84.65 0.46 0.79 16 14 N -0.93 -55.00 13.29 21.45 0.28 -54.72 16 15 Si 0.96 43.27 29.54 68.60 2.03 45.30 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 19 C 0.01 0.36 5.43 86.31 0.47 0.83 16 20 C 0.07 1.69 6.61 72.02 0.48 2.17 16 21 O -0.37 -9.86 10.17 -148.98 -1.52 -11.38 16 22 H 0.08 1.59 7.81 -2.39 -0.02 1.57 16 23 H 0.09 1.75 7.80 -2.39 -0.02 1.73 16 24 H 0.09 2.15 6.13 -2.39 -0.01 2.14 16 25 H 0.05 1.33 7.71 -2.39 -0.02 1.31 16 26 H 0.10 2.70 7.85 -2.39 -0.02 2.68 16 27 H 0.02 0.89 8.12 -2.39 -0.02 0.87 16 28 H 0.07 2.70 8.04 -2.38 -0.02 2.68 16 29 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 30 H 0.00 -0.05 6.51 -2.38 -0.02 -0.06 16 31 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 32 H 0.09 2.95 6.37 -2.39 -0.02 2.94 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.76 6.49 -2.39 -0.02 1.74 16 35 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -60.97 292.92 3.76 -57.21 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: 1.10 Total: 4.40 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 3.30 Total: -8.76 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -3.38 Total: -76.09 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -1.52 Total: -11.38 kcal Atomic # 9 Polarization: -12.91 SS G_CDS: 2.24 Total: -10.67 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -60.97 3.76 -57.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712745458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.583 kcal (2) G-P(sol) polarization free energy of solvation -60.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds