Wall clock time and date at job start Mon Mar 30 2020 04:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.53859 * 2 1 4 4 F 1.39903 * 109.47379 * 299.89187 * 3 2 1 5 5 F 1.39905 * 109.47234 * 59.89064 * 3 2 1 6 6 F 1.39902 * 109.47370 * 179.89263 * 3 2 1 7 7 C 1.53097 * 109.50794 * 120.10703 * 2 1 3 8 8 N 1.47009 * 109.25684 * 63.08974 * 7 2 1 9 9 C 1.46904 * 110.99972 * 182.39264 * 8 7 2 10 10 C 1.52998 * 109.46861 * 302.40943 * 9 8 7 11 11 C 1.50699 * 109.46700 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.47016 * 110.75526 * 58.61400 * 8 7 2 20 20 C 1.53100 * 109.25613 * 301.38653 * 19 8 7 21 21 O 1.43008 * 109.25950 * 56.84600 * 20 19 8 22 22 H 1.09005 * 109.46919 * 180.10929 * 1 2 3 23 23 H 1.08998 * 109.47630 * 300.10602 * 1 2 3 24 24 H 1.09003 * 109.47223 * 60.11417 * 1 2 3 25 25 H 1.08998 * 109.50420 * 303.15323 * 7 2 1 26 26 H 1.09001 * 109.50622 * 183.02526 * 7 2 1 27 27 H 1.09004 * 109.47048 * 182.41127 * 9 8 7 28 28 H 1.08997 * 109.46845 * 62.41291 * 9 8 7 29 29 H 1.09004 * 109.47139 * 60.00240 * 10 9 8 30 30 H 1.08997 * 109.47675 * 299.99840 * 10 9 8 31 31 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.50295 * 61.31708 * 19 8 7 33 33 H 1.08998 * 109.51192 * 181.40386 * 19 8 7 34 34 H 1.09003 * 109.50374 * 176.78104 * 20 19 8 35 35 H 1.08993 * 109.50537 * 296.86417 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 9 1.5782 2.1013 -1.1435 5 9 1.5741 2.1028 1.1410 6 9 3.4407 1.4404 0.0025 7 6 2.0413 -0.7239 1.2484 8 7 1.6111 -2.1289 1.2044 9 6 2.0337 -2.8470 2.4143 10 6 3.5540 -2.7530 2.5583 11 6 3.9874 -3.4890 3.7998 12 1 3.2522 -3.9757 4.4235 13 6 5.3227 -3.5413 4.1394 14 7 5.7011 -4.1841 5.2226 15 14 6.5944 -2.6991 3.0611 16 1 6.7872 -1.3009 3.5229 17 1 6.1242 -2.6947 1.6524 18 1 7.8828 -3.4320 3.1504 19 6 2.1186 -2.7916 -0.0058 20 6 1.6066 -2.0469 -1.2416 21 8 2.0076 -0.6762 -1.1662 22 1 -0.3633 -1.0277 0.0020 23 1 -0.3634 0.5154 0.8890 24 1 -0.3634 0.5121 -0.8910 25 1 1.6332 -0.2459 2.1390 26 1 3.1299 -0.6772 1.2760 27 1 1.7402 -3.8939 2.3367 28 1 1.5577 -2.3999 3.2870 29 1 3.8475 -1.7061 2.6359 30 1 4.0300 -3.2000 1.6856 31 1 6.6404 -4.2206 5.4618 32 1 3.2086 -2.7779 0.0017 33 1 1.7677 -3.8232 -0.0304 34 1 2.0266 -2.5001 -2.1396 35 1 0.5190 -2.1071 -1.2781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712745460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:22 Heat of formation + Delta-G solvation = -192.849808 kcal Electronic energy + Delta-G solvation = -22138.689296 eV Core-core repulsion = 18335.933187 eV Total energy + Delta-G solvation = -3802.756110 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.13443 -47.65350 -47.57537 -40.11019 -36.34979 -33.19091 -32.88104 -30.49085 -28.60056 -26.66593 -25.98745 -23.90589 -22.64061 -20.88445 -19.23716 -18.58581 -18.29806 -18.07512 -16.92254 -16.29490 -15.41668 -15.09343 -14.86187 -14.56823 -14.43252 -14.17065 -14.02899 -13.91291 -13.75749 -13.73709 -13.56019 -13.24238 -12.70327 -12.57960 -12.28916 -11.79224 -11.66158 -11.61845 -11.24479 -10.96945 -10.80031 -10.36644 -10.02251 -9.88525 -9.77387 -9.32490 -8.61614 -7.97144 -6.12899 -4.12091 2.43650 3.24892 3.25684 3.32969 3.35740 3.63221 3.90158 4.28439 4.37527 4.42429 4.55543 4.75206 5.00720 5.18785 5.22494 5.25768 5.38305 5.50597 5.55536 5.80177 5.83037 5.92680 6.00552 6.06876 6.25184 6.55492 6.77002 6.97191 6.99140 7.23454 7.34867 7.72203 8.42593 8.90969 9.49300 11.00138 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.006392 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.956405 B = 4379.754112 C = 4800.767876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.077 3.923 3 C 0.469 3.531 4 F -0.177 7.177 5 F -0.173 7.173 6 F -0.174 7.174 7 C 0.024 3.976 8 N -0.531 5.531 9 C 0.066 3.934 10 C -0.047 4.047 11 C -0.521 4.521 12 H 0.074 0.926 13 C 0.070 3.930 14 N -0.900 5.900 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.268 1.268 18 H -0.286 1.286 19 C 0.008 3.992 20 C 0.066 3.934 21 O -0.365 6.365 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.068 0.932 25 H 0.096 0.904 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.013 0.987 30 H 0.017 0.983 31 H 0.264 0.736 32 H 0.054 0.946 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 8.523 -13.124 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.036 3.964 3 C 0.414 3.586 4 F -0.158 7.158 5 F -0.155 7.155 6 F -0.155 7.155 7 C -0.105 4.105 8 N -0.255 5.255 9 C -0.060 4.060 10 C -0.085 4.085 11 C -0.559 4.559 12 H 0.092 0.908 13 C -0.132 4.132 14 N -0.538 5.538 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.192 1.192 18 H -0.212 1.212 19 C -0.121 4.121 20 C -0.011 4.011 21 O -0.284 6.284 22 H 0.114 0.886 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.115 0.885 26 H 0.082 0.918 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.035 0.965 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.739 8.573 -13.172 19.035 hybrid contribution 1.782 0.508 -0.188 1.862 sum -8.957 9.081 -13.360 18.472 Atomic orbital electron populations 1.22314 0.91535 1.05581 1.03428 1.22491 0.96635 0.87716 0.89596 1.20074 0.75883 0.89005 0.73614 1.93174 1.88495 1.83181 1.50983 1.93193 1.88500 1.82688 1.51080 1.93214 1.29347 1.96905 1.96061 1.22700 1.00544 0.91306 0.95952 1.62630 1.58510 1.00652 1.03718 1.22220 0.96484 0.97855 0.89446 1.20166 0.93282 0.96893 0.98186 1.20979 0.93567 1.33787 1.07586 0.90796 1.25015 0.98532 0.94807 0.94846 1.69905 1.16701 1.42498 1.24724 0.86828 0.81152 0.79956 0.81650 1.20171 1.19236 1.21197 1.22851 0.99792 0.99121 0.90302 1.22844 1.00061 0.79812 0.98339 1.87988 1.75522 1.24761 1.40154 0.88646 0.90311 0.91270 0.88539 0.91790 0.90698 0.90804 0.96887 0.96464 0.92616 0.92773 0.89077 0.87809 0.91601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 7.93 37.16 0.29 -1.59 16 2 C 0.08 1.06 0.59 -90.57 -0.05 1.01 16 3 C 0.47 6.61 2.38 37.16 0.09 6.70 16 4 F -0.18 -2.42 16.75 2.25 0.04 -2.38 16 5 F -0.17 -2.33 16.35 2.25 0.04 -2.29 16 6 F -0.17 -2.77 16.68 2.25 0.04 -2.73 16 7 C 0.02 0.37 3.58 -3.71 -0.01 0.36 16 8 N -0.53 -8.30 4.30 -234.31 -1.01 -9.31 16 9 C 0.07 1.24 5.32 -3.82 -0.02 1.22 16 10 C -0.05 -1.07 3.33 -27.88 -0.09 -1.17 16 11 C -0.52 -14.47 9.66 -34.44 -0.33 -14.81 16 12 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 15 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 C 0.01 0.11 5.33 -3.71 -0.02 0.09 16 20 C 0.07 0.77 6.61 37.21 0.25 1.02 16 21 O -0.37 -5.21 10.17 -35.23 -0.36 -5.57 16 22 H 0.09 1.03 6.13 -51.93 -0.32 0.71 16 23 H 0.08 0.81 7.80 -51.93 -0.41 0.40 16 24 H 0.07 0.70 7.81 -51.93 -0.41 0.29 16 25 H 0.10 1.44 7.91 -51.93 -0.41 1.03 16 26 H 0.06 1.16 5.98 -51.93 -0.31 0.85 16 27 H 0.07 1.38 8.11 -51.93 -0.42 0.95 16 28 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.01 0.30 5.85 -51.93 -0.30 0.00 16 30 H 0.02 0.40 5.67 -51.93 -0.29 0.11 16 31 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 32 H 0.05 0.90 6.59 -51.93 -0.34 0.56 16 33 H 0.09 1.16 8.12 -51.93 -0.42 0.74 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 0.67 6.50 -51.93 -0.34 0.33 16 LS Contribution 285.67 15.07 4.30 4.30 Total: -1.00 -30.15 285.67 -5.25 -35.40 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: -4.40 Total: -2.65 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 0.00 Total: -5.26 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: -0.23 Total: -36.00 kcal Atomic # 8 Polarization: -5.21 SS G_CDS: -0.36 Total: -5.57 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.11 Total: -7.40 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.15 -5.25 -35.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712745460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.449 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds