Wall clock time and date at job start Mon Mar 30 2020 04:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.53859 * 2 1 4 4 F 1.39903 * 109.47379 * 299.89187 * 3 2 1 5 5 F 1.39905 * 109.47234 * 59.89064 * 3 2 1 6 6 F 1.39902 * 109.47370 * 179.89263 * 3 2 1 7 7 C 1.53097 * 109.50794 * 120.10703 * 2 1 3 8 8 N 1.47009 * 109.25684 * 63.08974 * 7 2 1 9 9 C 1.46904 * 110.99972 * 182.39264 * 8 7 2 10 10 C 1.52998 * 109.46861 * 302.40943 * 9 8 7 11 11 C 1.50699 * 109.46700 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.47016 * 110.75526 * 58.61400 * 8 7 2 20 20 C 1.53100 * 109.25613 * 301.38653 * 19 8 7 21 21 O 1.43008 * 109.25950 * 56.84600 * 20 19 8 22 22 H 1.09005 * 109.46919 * 180.10929 * 1 2 3 23 23 H 1.08998 * 109.47630 * 300.10602 * 1 2 3 24 24 H 1.09003 * 109.47223 * 60.11417 * 1 2 3 25 25 H 1.08998 * 109.50420 * 303.15323 * 7 2 1 26 26 H 1.09001 * 109.50622 * 183.02526 * 7 2 1 27 27 H 1.09004 * 109.47048 * 182.41127 * 9 8 7 28 28 H 1.08997 * 109.46845 * 62.41291 * 9 8 7 29 29 H 1.09004 * 109.47139 * 60.00240 * 10 9 8 30 30 H 1.08997 * 109.47675 * 299.99840 * 10 9 8 31 31 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 32 32 H 1.09005 * 109.50295 * 61.31708 * 19 8 7 33 33 H 1.08998 * 109.51192 * 181.40386 * 19 8 7 34 34 H 1.09003 * 109.50374 * 176.78104 * 20 19 8 35 35 H 1.08993 * 109.50537 * 296.86417 * 20 19 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 9 1.5782 2.1013 -1.1435 5 9 1.5741 2.1028 1.1410 6 9 3.4407 1.4404 0.0025 7 6 2.0413 -0.7239 1.2484 8 7 1.6111 -2.1289 1.2044 9 6 2.0337 -2.8470 2.4143 10 6 3.5540 -2.7530 2.5583 11 6 3.9874 -3.4890 3.7998 12 1 3.2522 -3.9757 4.4235 13 6 5.3227 -3.5413 4.1394 14 7 5.7011 -4.1841 5.2226 15 14 6.5944 -2.6991 3.0611 16 1 6.7872 -1.3009 3.5229 17 1 6.1242 -2.6947 1.6524 18 1 7.8828 -3.4320 3.1504 19 6 2.1186 -2.7916 -0.0058 20 6 1.6066 -2.0469 -1.2416 21 8 2.0076 -0.6762 -1.1662 22 1 -0.3633 -1.0277 0.0020 23 1 -0.3634 0.5154 0.8890 24 1 -0.3634 0.5121 -0.8910 25 1 1.6332 -0.2459 2.1390 26 1 3.1299 -0.6772 1.2760 27 1 1.7402 -3.8939 2.3367 28 1 1.5577 -2.3999 3.2870 29 1 3.8475 -1.7061 2.6359 30 1 4.0300 -3.2000 1.6856 31 1 6.6404 -4.2206 5.4618 32 1 3.2086 -2.7779 0.0017 33 1 1.7677 -3.8232 -0.0304 34 1 2.0266 -2.5001 -2.1396 35 1 0.5190 -2.1071 -1.2781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712745460.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:21 Heat of formation + Delta-G solvation = -213.480834 kcal Electronic energy + Delta-G solvation = -22139.583925 eV Core-core repulsion = 18335.933187 eV Total energy + Delta-G solvation = -3803.650738 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -51.24128 -48.74833 -48.70713 -41.23652 -37.69579 -34.98189 -34.18692 -32.18217 -29.83675 -27.85182 -27.28813 -25.37052 -24.01325 -22.37728 -20.43661 -19.71563 -19.45097 -19.32962 -18.82406 -17.44112 -16.68490 -16.44802 -16.23564 -15.78254 -15.65952 -15.37705 -15.29207 -15.14024 -15.09827 -14.87072 -14.84961 -14.72411 -14.49066 -13.77079 -13.46411 -13.20282 -12.97339 -12.82589 -12.64074 -12.51096 -12.24972 -11.96300 -11.68732 -11.56850 -11.36753 -10.88731 -10.81909 -9.36078 -8.35960 -6.39288 1.26777 1.28924 1.37071 1.38547 2.19507 2.27184 2.49128 2.81171 2.99015 3.09017 3.36453 3.47305 3.70687 3.95550 4.08622 4.25232 4.34646 4.44121 4.52957 4.59652 4.62590 4.72705 4.80123 4.84068 4.95181 5.20191 5.27949 5.32644 5.49180 5.77868 5.86285 5.94801 6.23273 6.69420 7.25455 8.80326 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.023866 B = 0.006392 C = 0.005831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.956405 B = 4379.754112 C = 4800.767876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.081 3.919 3 C 0.467 3.533 4 F -0.173 7.173 5 F -0.170 7.170 6 F -0.188 7.188 7 C 0.021 3.979 8 N -0.516 5.516 9 C 0.077 3.923 10 C -0.039 4.039 11 C -0.526 4.526 12 H 0.042 0.958 13 C 0.012 3.988 14 N -0.945 5.945 15 Si 0.939 3.061 16 H -0.271 1.271 17 H -0.256 1.256 18 H -0.280 1.280 19 C 0.003 3.997 20 C 0.067 3.933 21 O -0.380 6.380 22 H 0.101 0.899 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.016 0.984 31 H 0.267 0.733 32 H 0.027 0.973 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.506 9.245 -15.147 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 C 0.412 3.588 4 F -0.154 7.154 5 F -0.152 7.152 6 F -0.170 7.170 7 C -0.108 4.108 8 N -0.239 5.239 9 C -0.050 4.050 10 C -0.078 4.078 11 C -0.565 4.565 12 H 0.061 0.939 13 C -0.185 4.185 14 N -0.585 5.585 15 Si 0.764 3.236 16 H -0.196 1.196 17 H -0.180 1.180 18 H -0.205 1.205 19 C -0.126 4.126 20 C -0.008 4.008 21 O -0.300 6.300 22 H 0.120 0.880 23 H 0.105 0.895 24 H 0.101 0.899 25 H 0.119 0.881 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.028 0.972 30 H 0.034 0.966 31 H 0.076 0.924 32 H 0.046 0.954 33 H 0.126 0.874 34 H 0.146 0.854 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.768 9.301 -15.214 21.365 hybrid contribution 2.048 0.258 0.469 2.117 sum -9.720 9.559 -14.745 20.082 Atomic orbital electron populations 1.22322 0.89108 1.06317 1.04542 1.22483 0.98238 0.86917 0.88393 1.20202 0.75262 0.89511 0.73790 1.93179 1.88341 1.83132 1.50775 1.93198 1.88345 1.82697 1.50933 1.93186 1.30634 1.96994 1.96143 1.22719 0.98932 0.91544 0.97590 1.62638 1.57717 1.00519 1.03065 1.21993 0.93308 0.98616 0.91082 1.20077 0.96461 0.95661 0.95590 1.21342 0.93056 1.33347 1.08737 0.93944 1.25872 1.00871 0.95638 0.96157 1.70038 1.17356 1.44428 1.26721 0.85825 0.78600 0.78927 0.80286 1.19607 1.18019 1.20538 1.23013 0.98305 1.00550 0.90695 1.23046 1.01594 0.78372 0.97796 1.87981 1.76092 1.25874 1.40048 0.88032 0.89521 0.89908 0.88119 0.94604 0.90335 0.91006 0.97193 0.96601 0.92415 0.95419 0.87412 0.85361 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 7.93 71.98 0.57 -2.55 16 2 C 0.08 2.05 0.59 -10.76 -0.01 2.04 16 3 C 0.47 12.39 2.38 71.98 0.17 12.56 16 4 F -0.17 -4.36 16.75 44.97 0.75 -3.61 16 5 F -0.17 -4.31 16.35 44.97 0.74 -3.58 16 6 F -0.19 -5.82 16.68 44.97 0.75 -5.07 16 7 C 0.02 0.63 3.58 86.31 0.31 0.94 16 8 N -0.52 -15.18 4.30 -895.21 -3.85 -19.04 16 9 C 0.08 2.82 5.32 86.30 0.46 3.28 16 10 C -0.04 -1.79 3.33 29.85 0.10 -1.69 16 11 C -0.53 -29.73 9.66 25.60 0.25 -29.48 16 12 H 0.04 2.60 7.99 -2.91 -0.02 2.57 16 13 C 0.01 0.72 5.47 84.65 0.46 1.18 16 14 N -0.94 -58.85 13.96 21.45 0.30 -58.55 16 15 Si 0.94 45.16 27.47 68.60 1.88 47.04 16 16 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 17 H -0.26 -11.72 6.54 99.48 0.65 -11.07 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 19 C 0.00 0.07 5.33 86.31 0.46 0.53 16 20 C 0.07 1.36 6.61 72.02 0.48 1.84 16 21 O -0.38 -9.87 10.17 -148.98 -1.52 -11.39 16 22 H 0.10 1.80 6.13 -2.38 -0.01 1.79 16 23 H 0.09 1.51 7.80 -2.39 -0.02 1.49 16 24 H 0.08 1.36 7.81 -2.39 -0.02 1.34 16 25 H 0.10 2.87 7.91 -2.39 -0.02 2.86 16 26 H 0.04 1.28 5.98 -2.39 -0.01 1.26 16 27 H 0.08 2.80 8.11 -2.39 -0.02 2.79 16 28 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.01 0.46 5.85 -2.39 -0.01 0.45 16 30 H 0.02 0.73 5.67 -2.39 -0.01 0.72 16 31 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.03 0.88 6.59 -2.38 -0.02 0.86 16 33 H 0.11 2.46 8.12 -2.39 -0.02 2.44 16 34 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 1.43 6.50 -2.39 -0.02 1.42 16 Total: -1.00 -65.03 285.67 3.36 -61.67 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: 1.05 Total: 3.87 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 3.25 Total: -11.35 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.55 Total: -77.59 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.52 Total: -11.39 kcal Atomic # 9 Polarization: -14.50 SS G_CDS: 2.24 Total: -12.26 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -65.03 3.36 -61.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712745460.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.806 kcal (2) G-P(sol) polarization free energy of solvation -65.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds