Wall clock time and date at job start Mon Mar 30 2020 04:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46985 * 274.13019 * 3 2 1 5 5 H 1.48497 * 109.46866 * 34.12535 * 3 2 1 6 6 H 1.48500 * 109.47262 * 154.12739 * 3 2 1 7 7 C 1.38809 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99914 * 197.12138 * 7 2 1 9 9 N 1.36939 * 119.99782 * 17.11750 * 7 2 1 10 10 C 1.47085 * 120.87942 * 206.91123 * 9 7 2 11 11 C 1.53235 * 108.52367 * 231.21028 * 10 9 7 12 12 N 1.46900 * 109.33632 * 306.17052 * 11 10 9 13 13 C 1.46904 * 110.99714 * 187.25464 * 12 11 10 14 14 C 1.52999 * 109.47088 * 170.00430 * 13 12 11 15 15 C 1.50699 * 109.47068 * 179.97438 * 14 13 12 16 16 C 1.35140 * 127.24936 * 90.00292 * 15 14 13 17 17 C 1.37803 * 114.75926 * 180.02562 * 16 15 14 18 18 N 1.30078 * 116.88739 * 359.97438 * 17 16 15 19 19 S 1.69610 * 107.14713 * 359.73848 * 18 17 16 20 20 C 1.46898 * 111.27092 * 63.10886 * 12 11 10 21 21 C 1.47077 * 120.88326 * 26.93945 * 9 7 2 22 22 H 0.97000 * 120.00329 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.62271 * 111.50000 * 10 9 7 24 24 H 1.09006 * 109.62787 * 350.92374 * 10 9 7 25 25 H 1.09002 * 109.48948 * 186.21618 * 11 10 9 26 26 H 1.08990 * 109.49427 * 66.13039 * 11 10 9 27 27 H 1.09008 * 109.46853 * 290.00170 * 13 12 11 28 28 H 1.08998 * 109.47347 * 49.99855 * 13 12 11 29 29 H 1.08999 * 109.47116 * 299.99853 * 14 13 12 30 30 H 1.08998 * 109.47496 * 59.99516 * 14 13 12 31 31 H 1.08000 * 122.61734 * 0.02562 * 16 15 14 32 32 H 1.08001 * 121.55746 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.49616 * 56.84639 * 20 12 11 34 34 H 1.08997 * 109.49802 * 176.93048 * 20 12 11 35 35 H 1.09004 * 109.62711 * 248.50294 * 21 9 7 36 36 H 1.09000 * 109.62394 * 9.08286 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4104 2.0968 -1.3965 5 1 1.4940 2.6259 0.7854 6 1 3.5887 1.4166 0.6109 7 6 2.0102 -1.2021 -0.0005 8 1 3.0543 -1.2229 0.2748 9 7 1.3710 -2.3616 -0.3501 10 6 1.8262 -3.6605 0.1686 11 6 2.0048 -4.6207 -1.0122 12 7 0.7626 -4.6653 -1.7951 13 6 0.8323 -5.7012 -2.8343 14 6 -0.5511 -5.8897 -3.4600 15 6 -0.4795 -6.9520 -4.5266 16 6 -0.6701 -8.2809 -4.3716 17 6 -0.5421 -9.0209 -5.5270 18 7 -0.2580 -8.3678 -6.6154 19 16 -0.1454 -6.7274 -6.1993 20 6 0.4536 -3.3534 -2.3794 21 6 0.2114 -2.3412 -1.2547 22 1 -0.4851 0.8400 -0.0004 23 1 1.0819 -4.0610 0.8569 24 1 2.7775 -3.5352 0.6858 25 1 2.2350 -5.6183 -0.6381 26 1 2.8210 -4.2716 -1.6446 27 1 1.5409 -5.3962 -3.6045 28 1 1.1610 -6.6405 -2.3897 29 1 -1.2597 -6.1947 -2.6900 30 1 -0.8799 -4.9505 -3.9047 31 1 -0.9045 -8.7279 -3.4168 32 1 -0.6724 -10.0931 -5.5288 33 1 1.2915 -3.0219 -2.9928 34 1 -0.4411 -3.4319 -2.9970 35 1 -0.6880 -2.6149 -0.7031 36 1 0.0952 -1.3437 -1.6784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719867973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:34 Heat of formation + Delta-G solvation = 69.505696 kcal Electronic energy + Delta-G solvation = -17914.219611 eV Core-core repulsion = 15139.742452 eV Total energy + Delta-G solvation = -2774.477159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.04783 -38.17187 -35.08680 -33.10403 -31.20025 -29.95645 -28.96503 -26.42748 -24.50723 -23.20176 -22.55436 -21.39970 -19.94849 -19.10809 -17.83959 -16.82625 -15.91379 -15.18002 -14.84234 -14.57055 -14.32661 -13.97696 -13.69630 -13.46114 -13.26124 -13.17845 -12.59033 -12.52776 -11.95213 -11.55417 -11.38566 -11.08630 -10.87402 -10.75462 -10.60084 -10.41903 -10.31100 -10.06450 -9.78813 -9.69852 -9.44769 -8.89437 -8.51721 -7.88319 -6.67645 -5.79060 -3.20493 0.55962 1.35667 1.75239 2.32434 3.37301 3.44500 3.45803 4.13645 4.49347 4.61760 4.88206 5.04729 5.12225 5.20591 5.38371 5.41675 5.53118 5.59323 5.72631 5.85457 5.90630 5.97680 6.05657 6.12812 6.20541 6.32173 6.42586 6.52448 6.66896 6.91363 7.22398 7.54559 7.61606 7.68020 7.80729 8.42716 9.20502 9.83743 10.42300 11.29793 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041056 B = 0.003736 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.829940 B = 7492.542373 C = 7786.882704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.149 3.851 11 C 0.045 3.955 12 N -0.532 5.532 13 C 0.062 3.938 14 C -0.047 4.047 15 C -0.148 4.148 16 C -0.215 4.215 17 C 0.091 3.909 18 N -0.470 5.470 19 S 0.248 5.752 20 C 0.030 3.970 21 C 0.178 3.822 22 H 0.254 0.746 23 H 0.026 0.974 24 H 0.056 0.944 25 H 0.062 0.938 26 H 0.028 0.972 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.182 0.818 33 H 0.026 0.974 34 H 0.062 0.938 35 H 0.027 0.973 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.308 -15.132 -8.517 17.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.319 5.319 10 C 0.022 3.978 11 C -0.084 4.084 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.087 4.087 15 C -0.278 4.278 16 C -0.250 4.250 17 C -0.106 4.106 18 N -0.290 5.290 19 S 0.399 5.601 20 C -0.099 4.099 21 C 0.052 3.948 22 H 0.064 0.936 23 H 0.044 0.956 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.115 0.885 30 H 0.103 0.897 31 H 0.175 0.825 32 H 0.198 0.802 33 H 0.044 0.956 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.314 -14.312 -10.198 17.623 hybrid contribution 0.626 0.078 1.069 1.242 sum -0.687 -14.234 -9.129 16.924 Atomic orbital electron populations 1.70032 1.05198 1.25459 1.54039 1.25026 0.95308 0.98353 1.00975 0.86273 0.79150 0.83759 0.77582 1.21517 1.21746 1.20425 1.19217 0.92632 0.84833 1.41570 0.91627 1.44126 1.34704 1.01307 1.51770 1.20982 0.97822 0.86453 0.92542 1.22618 0.89505 0.99470 0.96817 1.61953 1.34947 1.05745 1.23062 1.22038 0.94357 0.96539 0.93802 1.20203 0.99474 0.94894 0.94092 1.25617 1.01899 0.98930 1.01377 1.21356 1.09595 0.92577 1.01440 1.22834 0.97189 1.02445 0.88182 1.76787 1.24158 1.01058 1.27045 1.84211 1.64834 1.11417 0.99616 1.22991 0.98776 0.89387 0.98701 1.20855 0.89093 0.96502 0.88331 0.93628 0.95612 0.92593 0.92005 0.95380 0.95271 0.91004 0.88466 0.89715 0.82536 0.80173 0.95592 0.91937 0.95509 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 11.19 55.49 0.62 -25.43 16 2 C 0.00 0.05 4.93 -17.43 -0.09 -0.03 16 3 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 4 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.94 9.63 -15.06 -0.14 -7.09 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.60 -15.00 3.04 -172.01 -0.52 -15.52 16 10 C 0.15 3.13 6.69 -3.60 -0.02 3.10 16 11 C 0.05 0.79 5.62 -3.70 -0.02 0.77 16 12 N -0.53 -9.04 4.63 -234.32 -1.08 -10.12 16 13 C 0.06 0.83 4.94 -3.82 -0.02 0.81 16 14 C -0.05 -0.55 5.72 -27.88 -0.16 -0.70 16 15 C -0.15 -1.61 5.85 -35.41 -0.21 -1.82 16 16 C -0.22 -2.04 10.17 -40.84 -0.42 -2.46 16 17 C 0.09 0.87 11.27 -18.45 -0.21 0.66 16 18 N -0.47 -5.66 12.09 28.86 0.35 -5.31 16 19 S 0.25 2.85 23.72 -107.50 -2.55 0.30 16 20 C 0.03 0.57 5.46 -3.70 -0.02 0.55 16 21 C 0.18 4.23 5.42 -3.60 -0.02 4.21 16 22 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 23 H 0.03 0.56 8.14 -51.92 -0.42 0.14 16 24 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 25 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.03 0.41 8.13 -51.92 -0.42 -0.01 16 28 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 29 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.02 6.40 -51.93 -0.33 0.68 16 31 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 32 H 0.18 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 1.04 6.16 -51.93 -0.32 0.72 16 35 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 2.31 6.15 -51.93 -0.32 1.99 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -30.22 305.04 -10.09 -40.31 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.14 Total: -3.41 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.32 Total: -1.98 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.64 Total: -56.38 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Atomic # 16 Polarization: 2.85 SS G_CDS: -2.55 Total: 0.30 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.22 -10.09 -40.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719867973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.814 kcal (2) G-P(sol) polarization free energy of solvation -30.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds