Wall clock time and date at job start Mon Mar 30 2020 04:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86804 * 120.00143 * 2 1 4 4 H 1.48504 * 109.46985 * 274.13019 * 3 2 1 5 5 H 1.48497 * 109.46866 * 34.12535 * 3 2 1 6 6 H 1.48500 * 109.47262 * 154.12739 * 3 2 1 7 7 C 1.38809 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99914 * 197.12138 * 7 2 1 9 9 N 1.36939 * 119.99782 * 17.11750 * 7 2 1 10 10 C 1.47085 * 120.87942 * 206.91123 * 9 7 2 11 11 C 1.53235 * 108.52367 * 231.21028 * 10 9 7 12 12 N 1.46900 * 109.33632 * 306.17052 * 11 10 9 13 13 C 1.46904 * 110.99714 * 187.25464 * 12 11 10 14 14 C 1.52999 * 109.47088 * 170.00430 * 13 12 11 15 15 C 1.50699 * 109.47068 * 179.97438 * 14 13 12 16 16 C 1.35140 * 127.24936 * 90.00292 * 15 14 13 17 17 C 1.37803 * 114.75926 * 180.02562 * 16 15 14 18 18 N 1.30078 * 116.88739 * 359.97438 * 17 16 15 19 19 S 1.69610 * 107.14713 * 359.73848 * 18 17 16 20 20 C 1.46898 * 111.27092 * 63.10886 * 12 11 10 21 21 C 1.47077 * 120.88326 * 26.93945 * 9 7 2 22 22 H 0.97000 * 120.00329 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.62271 * 111.50000 * 10 9 7 24 24 H 1.09006 * 109.62787 * 350.92374 * 10 9 7 25 25 H 1.09002 * 109.48948 * 186.21618 * 11 10 9 26 26 H 1.08990 * 109.49427 * 66.13039 * 11 10 9 27 27 H 1.09008 * 109.46853 * 290.00170 * 13 12 11 28 28 H 1.08998 * 109.47347 * 49.99855 * 13 12 11 29 29 H 1.08999 * 109.47116 * 299.99853 * 14 13 12 30 30 H 1.08998 * 109.47496 * 59.99516 * 14 13 12 31 31 H 1.08000 * 122.61734 * 0.02562 * 16 15 14 32 32 H 1.08001 * 121.55746 * 180.02562 * 17 16 15 33 33 H 1.09004 * 109.49616 * 56.84639 * 20 12 11 34 34 H 1.08997 * 109.49802 * 176.93048 * 20 12 11 35 35 H 1.09004 * 109.62711 * 248.50294 * 21 9 7 36 36 H 1.09000 * 109.62394 * 9.08286 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4104 2.0968 -1.3965 5 1 1.4940 2.6259 0.7854 6 1 3.5887 1.4166 0.6109 7 6 2.0102 -1.2021 -0.0005 8 1 3.0543 -1.2229 0.2748 9 7 1.3710 -2.3616 -0.3501 10 6 1.8262 -3.6605 0.1686 11 6 2.0048 -4.6207 -1.0122 12 7 0.7626 -4.6653 -1.7951 13 6 0.8323 -5.7012 -2.8343 14 6 -0.5511 -5.8897 -3.4600 15 6 -0.4795 -6.9520 -4.5266 16 6 -0.6701 -8.2809 -4.3716 17 6 -0.5421 -9.0209 -5.5270 18 7 -0.2580 -8.3678 -6.6154 19 16 -0.1454 -6.7274 -6.1993 20 6 0.4536 -3.3534 -2.3794 21 6 0.2114 -2.3412 -1.2547 22 1 -0.4851 0.8400 -0.0004 23 1 1.0819 -4.0610 0.8569 24 1 2.7775 -3.5352 0.6858 25 1 2.2350 -5.6183 -0.6381 26 1 2.8210 -4.2716 -1.6446 27 1 1.5409 -5.3962 -3.6045 28 1 1.1610 -6.6405 -2.3897 29 1 -1.2597 -6.1947 -2.6900 30 1 -0.8799 -4.9505 -3.9047 31 1 -0.9045 -8.7279 -3.4168 32 1 -0.6724 -10.0931 -5.5288 33 1 1.2915 -3.0219 -2.9928 34 1 -0.4411 -3.4319 -2.9970 35 1 -0.6880 -2.6149 -0.7031 36 1 0.0952 -1.3437 -1.6784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000719867973.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:41:34 Heat of formation + Delta-G solvation = 50.203744 kcal Electronic energy + Delta-G solvation = -17915.056606 eV Core-core repulsion = 15139.742452 eV Total energy + Delta-G solvation = -2775.314154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02157 -39.47520 -36.63973 -34.45571 -32.89065 -31.63923 -30.13345 -27.97311 -25.74190 -24.63108 -24.19208 -22.63554 -20.85124 -20.68692 -18.76283 -18.65642 -17.11167 -16.61791 -16.19502 -15.97593 -15.47628 -15.33039 -15.18734 -15.05604 -14.78488 -14.27872 -13.82718 -13.66546 -13.20278 -13.03836 -12.97522 -12.63201 -12.54972 -12.29436 -12.02684 -11.93773 -11.74910 -11.51015 -11.40526 -11.33111 -10.59069 -10.39684 -9.70652 -9.28886 -8.67576 -7.87586 -5.32292 -0.23543 0.54295 0.96256 1.46750 1.48051 1.57285 1.60429 2.50844 2.92520 3.27616 3.68596 3.71986 3.95381 4.11050 4.29855 4.32400 4.35813 4.40678 4.57510 4.58582 4.66771 4.72937 4.80136 4.88729 5.00524 5.03030 5.10790 5.12277 5.23892 5.38616 5.61752 5.68922 5.69326 6.16500 6.24368 6.37989 7.13942 7.84685 8.38518 9.19141 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.041056 B = 0.003736 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.829940 B = 7492.542373 C = 7786.882704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.616 5.616 10 C 0.144 3.856 11 C 0.055 3.945 12 N -0.538 5.538 13 C 0.067 3.933 14 C -0.038 4.038 15 C -0.154 4.154 16 C -0.204 4.204 17 C 0.097 3.903 18 N -0.497 5.497 19 S 0.212 5.788 20 C 0.047 3.953 21 C 0.185 3.815 22 H 0.250 0.750 23 H 0.019 0.981 24 H 0.059 0.941 25 H 0.098 0.902 26 H 0.021 0.979 27 H 0.025 0.975 28 H 0.092 0.908 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.184 0.816 32 H 0.217 0.783 33 H 0.016 0.984 34 H 0.085 0.915 35 H 0.001 0.999 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -17.206 -8.699 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.221 1.221 6 H -0.193 1.193 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.340 5.340 10 C 0.018 3.982 11 C -0.074 4.074 12 N -0.262 5.262 13 C -0.061 4.061 14 C -0.078 4.078 15 C -0.284 4.284 16 C -0.238 4.238 17 C -0.101 4.101 18 N -0.317 5.317 19 S 0.364 5.636 20 C -0.082 4.082 21 C 0.059 3.941 22 H 0.059 0.941 23 H 0.037 0.963 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.095 0.905 31 H 0.201 0.799 32 H 0.233 0.767 33 H 0.034 0.966 34 H 0.103 0.897 35 H 0.020 0.980 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.780 -16.416 -10.390 19.443 hybrid contribution 0.445 0.595 1.175 1.390 sum -0.335 -15.821 -9.215 18.312 Atomic orbital electron populations 1.70184 1.06595 1.25848 1.55378 1.25777 0.96075 1.01415 1.01250 0.85257 0.78215 0.79626 0.77372 1.21332 1.22067 1.19299 1.19543 0.92917 0.86103 1.41010 0.91572 1.44422 1.34835 1.02243 1.52518 1.21142 0.97512 0.85463 0.94088 1.22471 0.89456 1.00132 0.95334 1.61892 1.34774 1.05262 1.24299 1.22074 0.95501 0.95788 0.92777 1.20060 0.98475 0.94988 0.94299 1.25520 1.03073 0.99406 1.00432 1.21684 1.07779 0.91886 1.02493 1.23438 0.95167 1.04040 0.87409 1.76854 1.25496 1.00985 1.28332 1.84296 1.66090 1.12259 1.00924 1.22652 0.99487 0.89421 0.96628 1.20619 0.87998 0.96278 0.89186 0.94054 0.96309 0.92223 0.88428 0.96062 0.95625 0.89014 0.87716 0.90487 0.79886 0.76682 0.96569 0.89677 0.98045 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 11.19 21.65 0.24 -55.20 16 2 C -0.05 -2.79 4.93 84.86 0.42 -2.37 16 3 Si 0.97 44.98 29.59 68.60 2.03 47.01 16 4 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 7 C -0.27 -14.77 9.63 84.03 0.81 -13.96 16 8 H 0.07 3.58 7.88 -2.91 -0.02 3.56 16 9 N -0.62 -31.43 3.04 -698.10 -2.12 -33.55 16 10 C 0.14 5.95 6.69 86.35 0.58 6.53 16 11 C 0.06 1.82 5.62 86.38 0.49 2.30 16 12 N -0.54 -17.22 4.63 -895.25 -4.14 -21.36 16 13 C 0.07 1.61 4.94 86.30 0.43 2.04 16 14 C -0.04 -0.80 5.72 29.85 0.17 -0.63 16 15 C -0.15 -2.98 5.85 24.97 0.15 -2.83 16 16 C -0.20 -3.14 10.17 21.45 0.22 -2.92 16 17 C 0.10 1.53 11.27 84.85 0.96 2.49 16 18 N -0.50 -11.07 12.09 -62.61 -0.76 -11.82 16 19 S 0.21 4.68 23.72 -56.49 -1.34 3.34 16 20 C 0.05 1.77 5.46 86.38 0.47 2.24 16 21 C 0.19 9.02 5.42 86.35 0.47 9.49 16 22 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 23 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 24 H 0.06 2.37 7.95 -2.38 -0.02 2.35 16 25 H 0.10 2.55 7.99 -2.39 -0.02 2.53 16 26 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.03 0.65 8.13 -2.38 -0.02 0.63 16 28 H 0.09 1.89 7.97 -2.39 -0.02 1.87 16 29 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.08 1.72 6.40 -2.39 -0.02 1.71 16 31 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.22 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.02 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.09 2.77 6.16 -2.39 -0.01 2.76 16 35 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.05 2.98 6.15 -2.39 -0.01 2.97 16 Total: -1.00 -66.31 305.04 0.12 -66.19 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: 1.06 Total: 3.02 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.15 Total: 2.37 kcal Atomic # 7 Polarization: -115.16 SS G_CDS: -6.78 Total: -121.93 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Atomic # 16 Polarization: 4.68 SS G_CDS: -1.34 Total: 3.34 kcal Total: -66.31 0.12 -66.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719867973.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.392 kcal (2) G-P(sol) polarization free energy of solvation -66.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds