Wall clock time and date at job start Mon Mar 30 2020 06:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47346 * 2 1 4 4 C 1.36935 * 119.99834 * 89.62209 * 3 2 1 5 5 H 1.08005 * 120.00067 * 34.21690 * 4 3 2 6 6 C 1.38807 * 120.00125 * 213.94148 * 4 3 2 7 7 N 1.31616 * 120.00054 * 23.01699 * 6 4 3 8 8 Si 1.86803 * 119.99905 * 203.01969 * 6 4 3 9 9 H 1.48493 * 109.47467 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47004 * 119.99750 * 8 6 4 11 11 H 1.48496 * 109.46993 * 239.99730 * 8 6 4 12 12 C 1.46496 * 120.00075 * 269.62775 * 3 2 1 13 13 C 1.52996 * 109.46935 * 269.99802 * 12 3 2 14 14 H 1.09004 * 109.82671 * 59.11513 * 13 12 3 15 15 C 1.54382 * 109.83131 * 179.97438 * 13 12 3 16 16 C 1.55304 * 102.25151 * 140.87133 * 15 13 12 17 17 C 1.54941 * 100.94308 * 325.86959 * 16 15 13 18 18 H 1.09008 * 110.31188 * 277.53244 * 17 16 15 19 19 C 1.52999 * 110.31066 * 155.46340 * 17 16 15 20 20 F 1.39897 * 109.47532 * 59.99955 * 19 17 16 21 21 F 1.39908 * 109.47171 * 180.02562 * 19 17 16 22 22 F 1.39900 * 109.47011 * 299.99769 * 19 17 16 23 23 O 1.43232 * 109.83477 * 298.13477 * 13 12 3 24 24 H 1.09004 * 109.46589 * 59.99902 * 1 2 3 25 25 H 1.08994 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46998 * 299.99896 * 1 2 3 27 27 H 1.08996 * 109.46961 * 239.99557 * 2 1 3 28 28 H 1.09004 * 109.46589 * 120.00098 * 2 1 3 29 29 H 0.97004 * 120.00066 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47220 * 29.99527 * 12 3 2 31 31 H 1.08999 * 109.47304 * 149.99995 * 12 3 2 32 32 H 1.08997 * 110.85015 * 259.06010 * 15 13 12 33 33 H 1.09001 * 110.84558 * 22.47809 * 15 13 12 34 34 H 1.09001 * 111.12611 * 83.79172 * 16 15 13 35 35 H 1.09010 * 111.12462 * 207.95305 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2393 2.0293 1.1859 5 1 2.5966 1.4788 2.0437 6 6 2.0095 3.3947 1.2839 7 7 1.1837 3.9849 0.4461 8 14 2.8724 4.3945 2.6050 9 1 3.7416 3.5019 3.4129 10 1 3.7016 5.4478 1.9661 11 1 1.8595 5.0287 3.4865 12 6 2.2704 2.0690 -1.2687 13 6 3.7181 1.8276 -1.7009 14 1 3.8966 0.7583 -1.8144 15 6 3.9926 2.5487 -3.0380 16 6 5.4334 3.0901 -2.8308 17 6 5.4126 3.4087 -1.3146 18 1 4.9567 4.3832 -1.1389 19 6 6.8326 3.3775 -0.7459 20 9 7.6189 4.3306 -1.4019 21 9 6.7934 3.6665 0.6225 22 9 7.3839 2.1061 -0.9378 23 8 4.6139 2.3705 -0.7240 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.0234 4.9391 0.5144 30 1 1.5943 1.6833 -2.0317 31 1 2.1027 3.1385 -1.1417 32 1 3.9580 1.8470 -3.8714 33 1 3.2864 3.3648 -3.1908 34 1 6.1768 2.3272 -3.0618 35 1 5.6026 3.9919 -3.4194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721504507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:11 Heat of formation + Delta-G solvation = -181.287314 kcal Electronic energy + Delta-G solvation = -22251.385880 eV Core-core repulsion = 18449.131157 eV Total energy + Delta-G solvation = -3802.254722 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -49.80975 -47.37342 -47.24237 -39.13600 -35.69362 -31.88433 -31.69425 -31.06073 -28.63140 -26.50994 -24.12247 -23.06885 -21.47837 -21.02068 -19.67485 -18.39916 -17.97387 -17.57980 -16.70130 -15.95744 -15.11986 -14.49354 -14.23183 -14.09696 -13.94552 -13.77368 -13.73107 -13.45836 -13.43536 -13.28755 -13.03634 -12.51292 -12.47201 -11.83017 -11.45328 -11.25388 -11.09352 -11.02764 -10.85606 -10.71360 -10.56813 -10.23788 -9.95556 -9.80122 -9.68622 -9.04093 -8.39079 -6.52321 -5.68465 -3.19492 2.89670 3.44574 3.53052 3.60543 3.76836 4.05924 4.28471 4.59852 4.70759 4.81842 5.05970 5.29205 5.32436 5.51183 5.55580 5.66017 5.83615 5.95548 6.02696 6.12939 6.32284 6.39898 6.50533 6.60424 6.68048 6.75424 7.00372 7.27524 7.51669 7.68101 7.92966 8.59686 9.27456 9.92657 10.46269 11.32844 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.008945 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.783448 B = 3129.584705 C = 3976.589651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.229 4.229 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.896 5.896 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.294 1.294 12 C 0.132 3.868 13 C 0.062 3.938 14 H 0.066 0.934 15 C -0.145 4.145 16 C -0.149 4.149 17 C 0.035 3.965 18 H 0.108 0.892 19 C 0.454 3.546 20 F -0.186 7.186 21 F -0.176 7.176 22 F -0.180 7.180 23 O -0.319 6.319 24 H 0.041 0.959 25 H 0.029 0.971 26 H 0.054 0.946 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.250 0.750 30 H 0.035 0.965 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.519 -1.703 -8.163 11.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.299 5.299 4 C -0.359 4.359 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.541 5.541 8 Si 0.719 3.281 9 H -0.201 1.201 10 H -0.215 1.215 11 H -0.222 1.222 12 C 0.004 3.996 13 C 0.003 3.997 14 H 0.083 0.917 15 C -0.183 4.183 16 C -0.187 4.187 17 C -0.026 4.026 18 H 0.125 0.875 19 C 0.399 3.601 20 F -0.167 7.167 21 F -0.157 7.157 22 F -0.162 7.162 23 O -0.238 6.238 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.497 -1.644 -7.906 11.019 hybrid contribution 0.704 0.724 0.560 1.155 sum 8.201 -0.920 -7.346 11.048 Atomic orbital electron populations 1.22285 0.99772 0.98275 1.01863 1.20878 0.91888 0.87653 0.98099 1.43763 1.74115 1.09757 1.02285 1.18973 1.35887 0.91074 0.89964 0.92405 1.24880 0.97462 0.98306 0.98002 1.69965 1.34443 1.09917 1.39762 0.86433 0.79473 0.80444 0.81764 1.20063 1.21526 1.22184 1.21403 0.88458 1.02988 0.86709 1.23870 0.94353 0.96238 0.85263 0.91652 1.23153 0.95094 1.01201 0.98898 1.23280 0.99291 1.02613 0.93516 1.24048 0.86999 0.97726 0.93785 0.87463 1.20709 0.89578 0.73305 0.76490 1.93145 1.77189 1.65172 1.81221 1.93217 1.96792 1.93128 1.32554 1.93152 1.87607 1.40587 1.94844 1.88764 1.50880 1.49890 1.34218 0.93935 0.95183 0.92646 0.95116 0.93993 0.93983 0.94636 0.87510 0.90179 0.89796 0.89790 0.89235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.24 37.16 0.38 -2.83 16 2 C 0.14 2.96 6.39 -4.04 -0.03 2.94 16 3 N -0.58 -14.15 2.42 -173.24 -0.42 -14.57 16 4 C -0.23 -6.28 8.91 -15.06 -0.13 -6.41 16 5 H 0.06 1.63 7.93 -52.48 -0.42 1.22 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.24 16 7 N -0.90 -25.31 11.31 55.49 0.63 -24.68 16 8 Si 0.89 22.42 29.61 -169.99 -5.03 17.38 16 9 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 C 0.13 2.91 4.89 -4.05 -0.02 2.89 16 13 C 0.06 1.17 3.79 -26.01 -0.10 1.07 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.15 -2.06 6.55 -24.79 -0.16 -2.22 16 16 C -0.15 -1.99 6.31 -24.48 -0.15 -2.15 16 17 C 0.03 0.60 3.41 -25.71 -0.09 0.51 16 18 H 0.11 1.87 8.14 -51.92 -0.42 1.44 16 19 C 0.45 7.66 2.90 37.16 0.11 7.77 16 20 F -0.19 -2.79 17.07 2.25 0.04 -2.75 16 21 F -0.18 -3.39 17.31 2.25 0.04 -3.35 16 22 F -0.18 -3.05 16.58 2.25 0.04 -3.02 16 23 O -0.32 -6.74 9.99 -35.23 -0.35 -7.09 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.58 8.07 -51.93 -0.42 0.16 16 28 H 0.04 0.88 8.04 -51.93 -0.42 0.46 16 29 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 31 H 0.11 2.70 5.31 -51.93 -0.28 2.42 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.08 1.20 7.85 -51.93 -0.41 0.79 16 34 H 0.08 1.05 7.54 -51.93 -0.39 0.66 16 35 H 0.09 0.99 8.14 -51.92 -0.42 0.56 16 LS Contribution 302.07 15.07 4.55 4.55 Total: -1.00 -29.44 302.07 -5.63 -35.07 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -4.84 Total: -3.34 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -0.28 Total: 1.80 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.21 Total: -39.25 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.35 Total: -7.09 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.11 Total: -9.12 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.03 Total: 17.38 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.44 -5.63 -35.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721504507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.220 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds