Wall clock time and date at job start Mon Mar 30 2020 06:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.47346 * 2 1 4 4 C 1.36935 * 119.99834 * 89.62209 * 3 2 1 5 5 H 1.08005 * 120.00067 * 34.21690 * 4 3 2 6 6 C 1.38807 * 120.00125 * 213.94148 * 4 3 2 7 7 N 1.31616 * 120.00054 * 23.01699 * 6 4 3 8 8 Si 1.86803 * 119.99905 * 203.01969 * 6 4 3 9 9 H 1.48493 * 109.47467 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47004 * 119.99750 * 8 6 4 11 11 H 1.48496 * 109.46993 * 239.99730 * 8 6 4 12 12 C 1.46496 * 120.00075 * 269.62775 * 3 2 1 13 13 C 1.52996 * 109.46935 * 269.99802 * 12 3 2 14 14 H 1.09004 * 109.82671 * 59.11513 * 13 12 3 15 15 C 1.54382 * 109.83131 * 179.97438 * 13 12 3 16 16 C 1.55304 * 102.25151 * 140.87133 * 15 13 12 17 17 C 1.54941 * 100.94308 * 325.86959 * 16 15 13 18 18 H 1.09008 * 110.31188 * 277.53244 * 17 16 15 19 19 C 1.52999 * 110.31066 * 155.46340 * 17 16 15 20 20 F 1.39897 * 109.47532 * 59.99955 * 19 17 16 21 21 F 1.39908 * 109.47171 * 180.02562 * 19 17 16 22 22 F 1.39900 * 109.47011 * 299.99769 * 19 17 16 23 23 O 1.43232 * 109.83477 * 298.13477 * 13 12 3 24 24 H 1.09004 * 109.46589 * 59.99902 * 1 2 3 25 25 H 1.08994 * 109.47269 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46998 * 299.99896 * 1 2 3 27 27 H 1.08996 * 109.46961 * 239.99557 * 2 1 3 28 28 H 1.09004 * 109.46589 * 120.00098 * 2 1 3 29 29 H 0.97004 * 120.00066 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47220 * 29.99527 * 12 3 2 31 31 H 1.08999 * 109.47304 * 149.99995 * 12 3 2 32 32 H 1.08997 * 110.85015 * 259.06010 * 15 13 12 33 33 H 1.09001 * 110.84558 * 22.47809 * 15 13 12 34 34 H 1.09001 * 111.12611 * 83.79172 * 16 15 13 35 35 H 1.09010 * 111.12462 * 207.95305 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2393 2.0293 1.1859 5 1 2.5966 1.4788 2.0437 6 6 2.0095 3.3947 1.2839 7 7 1.1837 3.9849 0.4461 8 14 2.8724 4.3945 2.6050 9 1 3.7416 3.5019 3.4129 10 1 3.7016 5.4478 1.9661 11 1 1.8595 5.0287 3.4865 12 6 2.2704 2.0690 -1.2687 13 6 3.7181 1.8276 -1.7009 14 1 3.8966 0.7583 -1.8144 15 6 3.9926 2.5487 -3.0380 16 6 5.4334 3.0901 -2.8308 17 6 5.4126 3.4087 -1.3146 18 1 4.9567 4.3832 -1.1389 19 6 6.8326 3.3775 -0.7459 20 9 7.6189 4.3306 -1.4019 21 9 6.7934 3.6665 0.6225 22 9 7.3839 2.1061 -0.9378 23 8 4.6139 2.3705 -0.7240 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8900 29 1 1.0234 4.9391 0.5144 30 1 1.5943 1.6833 -2.0317 31 1 2.1027 3.1385 -1.1417 32 1 3.9580 1.8470 -3.8714 33 1 3.2864 3.3648 -3.1908 34 1 6.1768 2.3272 -3.0618 35 1 5.6026 3.9919 -3.4194 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721504507.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:07 Heat of formation + Delta-G solvation = -198.090039 kcal Electronic energy + Delta-G solvation = -22252.114500 eV Core-core repulsion = 18449.131157 eV Total energy + Delta-G solvation = -3802.983343 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.15378 -48.68196 -48.64183 -40.53353 -37.49590 -33.69598 -33.17510 -32.52617 -30.32741 -28.14719 -25.84686 -24.63742 -22.77359 -22.48492 -21.37771 -19.73439 -19.32626 -18.95639 -18.56466 -17.36989 -16.81208 -16.18643 -15.70789 -15.66986 -15.50560 -15.42949 -15.09398 -14.87120 -14.80857 -14.77056 -14.34552 -14.22972 -13.80116 -13.50571 -13.08236 -12.91300 -12.65857 -12.59407 -12.42570 -12.33010 -12.15443 -11.84787 -11.74612 -11.60520 -11.41605 -10.57602 -10.45360 -8.49715 -7.74525 -5.28089 1.40339 1.45825 1.55368 1.56657 2.42652 2.56242 2.76807 2.97019 3.32349 3.46650 3.52554 3.79174 3.92964 4.07753 4.20697 4.37428 4.47895 4.70171 4.74791 4.79287 4.90979 4.91434 4.99862 5.00396 5.10391 5.28478 5.33016 5.59581 5.73788 5.90809 6.10900 6.55315 7.26695 7.97714 8.44597 9.21574 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.008945 C = 0.007040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.783448 B = 3129.584705 C = 3976.589651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.136 3.864 3 N -0.597 5.597 4 C -0.230 4.230 5 H 0.040 0.960 6 C -0.023 4.023 7 N -0.915 5.915 8 Si 0.928 3.072 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.293 1.293 12 C 0.131 3.869 13 C 0.062 3.938 14 H 0.071 0.929 15 C -0.134 4.134 16 C -0.135 4.135 17 C 0.025 3.975 18 H 0.098 0.902 19 C 0.457 3.543 20 F -0.172 7.172 21 F -0.195 7.195 22 F -0.180 7.180 23 O -0.358 6.358 24 H 0.036 0.964 25 H 0.066 0.934 26 H 0.024 0.976 27 H 0.058 0.942 28 H 0.037 0.963 29 H 0.248 0.752 30 H 0.047 0.953 31 H 0.076 0.924 32 H 0.113 0.887 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.243 -2.311 -9.967 13.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.010 3.990 3 N -0.317 5.317 4 C -0.361 4.361 5 H 0.058 0.942 6 C -0.219 4.219 7 N -0.561 5.561 8 Si 0.758 3.242 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.221 1.221 12 C 0.005 3.995 13 C 0.003 3.997 14 H 0.089 0.911 15 C -0.172 4.172 16 C -0.172 4.172 17 C -0.035 4.035 18 H 0.116 0.884 19 C 0.403 3.597 20 F -0.153 7.153 21 F -0.176 7.176 22 F -0.161 7.161 23 O -0.277 6.277 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.132 0.868 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.227 -2.262 -9.725 12.938 hybrid contribution 0.490 0.852 1.124 1.493 sum 8.717 -1.410 -8.602 12.327 Atomic orbital electron populations 1.22130 0.98796 1.00048 0.99988 1.21020 0.92610 0.86143 0.99189 1.43994 1.74747 1.10843 1.02140 1.18978 1.35016 0.91384 0.90706 0.94205 1.25241 0.98275 0.98905 0.99498 1.70049 1.35472 1.09746 1.40863 0.85816 0.78617 0.79390 0.80337 1.20608 1.21546 1.22057 1.21377 0.91166 1.00865 0.86107 1.23728 0.91783 0.97083 0.87110 0.91102 1.23112 0.95464 1.01409 0.97244 1.23317 0.98999 1.04305 0.90596 1.24223 0.86372 0.96485 0.96452 0.88410 1.20675 0.89836 0.73511 0.75694 1.93169 1.76802 1.64619 1.80752 1.93178 1.96905 1.93293 1.34234 1.93149 1.87591 1.40629 1.94752 1.88709 1.51778 1.50856 1.36336 0.94484 0.91535 0.95712 0.92337 0.94497 0.94277 0.93444 0.90648 0.86828 0.89996 0.88425 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.75 10.24 71.98 0.74 -5.02 16 2 C 0.14 5.54 6.39 86.38 0.55 6.09 16 3 N -0.60 -29.05 2.42 -702.01 -1.70 -30.74 16 4 C -0.23 -12.78 8.91 84.03 0.75 -12.03 16 5 H 0.04 2.32 7.93 -2.91 -0.02 2.30 16 6 C -0.02 -1.28 4.95 84.86 0.42 -0.86 16 7 N -0.91 -52.45 11.31 21.65 0.24 -52.21 16 8 Si 0.93 46.75 29.61 68.60 2.03 48.78 16 9 H -0.28 -14.22 7.11 99.48 0.71 -13.52 16 10 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 11 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 12 C 0.13 5.72 4.89 86.38 0.42 6.14 16 13 C 0.06 2.22 3.79 31.06 0.12 2.34 16 14 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 15 C -0.13 -3.39 6.55 31.85 0.21 -3.18 16 16 C -0.13 -3.14 6.31 32.05 0.20 -2.94 16 17 C 0.02 0.82 3.41 31.26 0.11 0.92 16 18 H 0.10 3.37 8.14 -2.38 -0.02 3.35 16 19 C 0.46 14.87 2.90 71.98 0.21 15.08 16 20 F -0.17 -4.81 17.07 44.97 0.77 -4.05 16 21 F -0.19 -7.49 17.31 44.97 0.78 -6.71 16 22 F -0.18 -5.80 16.58 44.97 0.75 -5.05 16 23 O -0.36 -14.89 9.99 -148.98 -1.49 -16.38 16 24 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 2.05 8.07 -2.39 -0.02 2.03 16 28 H 0.04 1.52 8.04 -2.38 -0.02 1.50 16 29 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 30 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 31 H 0.08 3.84 5.31 -2.39 -0.01 3.82 16 32 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.08 2.12 7.85 -2.39 -0.02 2.10 16 34 H 0.10 2.05 7.54 -2.39 -0.02 2.03 16 35 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -63.95 302.07 6.19 -57.76 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: 1.08 Total: 2.06 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: 3.72 Total: 6.54 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -1.45 Total: -82.95 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.49 Total: -16.38 kcal Atomic # 9 Polarization: -18.10 SS G_CDS: 2.29 Total: -15.81 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -63.95 6.19 -57.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721504507.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.331 kcal (2) G-P(sol) polarization free energy of solvation -63.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds