Wall clock time and date at job start Mon Mar 30 2020 04:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48496 * 109.47297 * 269.99929 * 3 2 1 5 5 H 1.48498 * 109.47002 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.46730 * 149.99979 * 3 2 1 7 7 C 1.37877 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99892 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47079 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47123 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00002 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47006 * 179.97438 * 12 11 10 14 14 H 1.09002 * 110.27448 * 59.30142 * 13 12 11 15 15 C 1.54945 * 110.39100 * 181.44733 * 13 12 11 16 16 C 1.55304 * 100.94045 * 155.40253 * 15 13 12 17 17 C 1.54376 * 102.25567 * 325.86882 * 16 15 13 18 18 H 1.08999 * 109.83271 * 261.84174 * 17 16 15 19 19 C 1.53001 * 109.83372 * 140.86705 * 17 16 15 20 20 F 1.39900 * 109.47323 * 300.41032 * 19 17 16 21 21 F 1.39897 * 109.47003 * 60.41404 * 19 17 16 22 22 F 1.39902 * 109.47165 * 180.41530 * 19 17 16 23 23 O 1.43240 * 107.58930 * 21.35352 * 17 16 15 24 24 H 0.96994 * 119.99836 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46832 * 59.99771 * 9 7 2 26 26 H 1.09001 * 109.46831 * 299.99812 * 9 7 2 27 27 H 1.09003 * 109.47110 * 59.99508 * 10 9 7 28 28 H 1.09000 * 109.46851 * 300.00012 * 10 9 7 29 29 H 1.00901 * 111.00346 * 303.95585 * 11 10 9 30 30 H 1.09001 * 109.46624 * 60.00456 * 12 11 10 31 31 H 1.08993 * 109.47653 * 300.00085 * 12 11 10 32 32 H 1.08997 * 111.12470 * 273.31972 * 15 13 12 33 33 H 1.08995 * 111.12619 * 37.48960 * 15 13 12 34 34 H 1.08998 * 110.85543 * 207.67443 * 16 15 13 35 35 H 1.09009 * 111.02412 * 84.13543 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4353 -6.0759 0.0006 13 6 1.6351 -7.3801 0.0019 14 1 0.9917 -7.4293 -0.8766 15 6 2.5904 -8.5995 0.0380 16 6 1.6679 -9.6780 0.6686 17 6 0.8073 -8.8445 1.6422 18 1 1.2129 -8.9193 2.6511 19 6 -0.6364 -9.3508 1.6226 20 9 -1.1520 -9.2397 0.3268 21 9 -0.6661 -10.6909 2.0231 22 9 -1.4112 -8.5845 2.4999 23 8 0.8506 -7.4825 1.2008 24 1 -0.4849 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8746 -4.9842 0.7827 30 1 3.0638 -6.0348 0.8902 31 1 3.0626 -6.0350 -0.8898 32 1 2.8997 -8.8861 -0.9672 33 1 3.4549 -8.4027 0.6719 34 1 2.2536 -10.4222 1.2083 35 1 1.0456 -10.1526 -0.0902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722382914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:38 Heat of formation + Delta-G solvation = -213.960359 kcal Electronic energy + Delta-G solvation = -20578.531480 eV Core-core repulsion = 16774.859948 eV Total energy + Delta-G solvation = -3803.671532 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.23252 -47.77705 -47.67860 -39.96817 -35.88794 -33.09650 -32.67196 -31.42554 -29.13375 -26.55082 -24.32611 -22.95989 -22.11464 -21.11603 -20.41384 -18.86530 -18.41881 -18.09057 -16.98147 -16.28595 -15.96549 -15.20565 -14.59592 -14.52969 -14.40617 -14.18001 -14.13968 -13.89000 -13.84533 -13.70409 -13.66513 -13.24483 -12.49421 -12.44334 -12.17890 -12.04579 -11.63238 -11.30904 -11.25918 -10.99882 -10.88910 -10.50570 -10.05527 -9.90266 -9.34371 -9.11722 -8.32496 -7.81275 -5.96674 -3.99520 2.43872 3.09935 3.33964 3.39890 3.42968 3.53360 3.69706 4.12682 4.21663 4.27139 4.45763 4.54991 4.66811 4.93143 5.07830 5.20937 5.26466 5.37054 5.39094 5.42913 5.63326 5.76557 5.99280 6.34499 6.41903 6.54174 7.00010 7.48563 7.76678 7.85367 7.99569 8.11971 8.46222 9.07858 9.64047 11.14787 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.034736 B = 0.003430 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.876005 B = 8162.321798 C = 8697.714851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.066 3.934 11 N -0.691 5.691 12 C 0.063 3.937 13 C 0.077 3.923 14 H 0.088 0.912 15 C -0.146 4.146 16 C -0.150 4.150 17 C 0.042 3.958 18 H 0.123 0.877 19 C 0.439 3.561 20 F -0.178 7.178 21 F -0.184 7.184 22 F -0.175 7.175 23 O -0.346 6.346 24 H 0.260 0.740 25 H 0.025 0.975 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.057 0.943 29 H 0.345 0.655 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 -23.321 2.409 23.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.322 5.322 12 C -0.067 4.067 13 C 0.020 3.980 14 H 0.106 0.894 15 C -0.184 4.184 16 C -0.188 4.188 17 C -0.018 4.018 18 H 0.141 0.859 19 C 0.385 3.615 20 F -0.160 7.160 21 F -0.165 7.165 22 F -0.157 7.157 23 O -0.264 6.264 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.033 0.967 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.163 0.837 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.348 -23.026 1.823 23.340 hybrid contribution 0.501 0.698 0.864 1.218 sum 3.849 -22.328 2.687 22.817 Atomic orbital electron populations 1.69980 1.06033 1.26578 1.50590 1.25010 0.94838 0.99209 0.95324 0.86583 0.79775 0.83477 0.78083 1.20647 1.21220 1.19943 1.21176 0.92949 0.91036 1.50932 0.92780 1.19073 0.94043 0.90377 0.97826 1.22161 0.97005 0.88510 0.98535 1.60575 1.19491 1.01806 1.50342 1.22050 0.94280 0.89444 1.00912 1.23385 0.91734 0.95184 0.87674 0.89374 1.23311 0.98556 0.93643 1.02888 1.23176 0.98351 0.98665 0.98572 1.23883 0.89066 0.85882 1.03013 0.85949 1.21105 0.91192 0.75242 0.73966 1.93189 1.88945 1.95692 1.38133 1.93171 1.97052 1.35542 1.90779 1.93218 1.77847 1.75301 1.69306 1.88605 1.72898 1.21465 1.43463 0.92985 0.95628 0.96707 0.96661 0.92400 0.83726 0.95074 0.89873 0.88768 0.89553 0.88382 0.89233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.65 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.65 5.23 -27.88 -0.15 0.50 16 10 C 0.07 1.41 5.62 -3.83 -0.02 1.39 16 11 N -0.69 -12.69 6.50 -113.78 -0.74 -13.43 16 12 C 0.06 0.87 5.45 -3.82 -0.02 0.85 16 13 C 0.08 0.89 3.70 -25.70 -0.10 0.80 16 14 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.15 -1.10 6.57 -24.48 -0.16 -1.26 16 16 C -0.15 -1.04 6.24 -24.79 -0.15 -1.20 16 17 C 0.04 0.40 3.50 -26.01 -0.09 0.31 16 18 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 19 C 0.44 4.85 2.80 37.16 0.10 4.96 16 20 F -0.18 -2.21 16.55 2.25 0.04 -2.17 16 21 F -0.18 -1.84 17.06 2.25 0.04 -1.80 16 22 F -0.18 -2.30 17.28 2.25 0.04 -2.26 16 23 O -0.35 -4.46 10.09 -35.23 -0.36 -4.82 16 24 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.34 6.53 8.26 -39.29 -0.32 6.21 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.59 8.06 -51.93 -0.42 0.17 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.62 7.35 -51.92 -0.38 0.24 16 LS Contribution 306.45 15.07 4.62 4.62 Total: -1.00 -31.73 306.45 -6.54 -38.27 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -4.89 Total: -1.18 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.00 Total: -7.45 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.00 Total: -40.08 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.36 Total: -4.82 kcal Atomic # 9 Polarization: -6.34 SS G_CDS: 0.11 Total: -6.23 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.73 -6.54 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722382914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.692 kcal (2) G-P(sol) polarization free energy of solvation -31.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds