Wall clock time and date at job start Mon Mar 30 2020 04:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99844 * 2 1 4 4 H 1.48496 * 109.47297 * 269.99929 * 3 2 1 5 5 H 1.48498 * 109.47002 * 30.00096 * 3 2 1 6 6 H 1.48500 * 109.46730 * 149.99979 * 3 2 1 7 7 C 1.37877 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99892 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00284 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47079 * 179.97438 * 9 7 2 11 11 N 1.46897 * 109.47123 * 179.97438 * 10 9 7 12 12 C 1.46900 * 111.00002 * 179.97438 * 11 10 9 13 13 C 1.53004 * 109.47006 * 179.97438 * 12 11 10 14 14 H 1.09002 * 110.27448 * 59.30142 * 13 12 11 15 15 C 1.54945 * 110.39100 * 181.44733 * 13 12 11 16 16 C 1.55304 * 100.94045 * 155.40253 * 15 13 12 17 17 C 1.54376 * 102.25567 * 325.86882 * 16 15 13 18 18 H 1.08999 * 109.83271 * 261.84174 * 17 16 15 19 19 C 1.53001 * 109.83372 * 140.86705 * 17 16 15 20 20 F 1.39900 * 109.47323 * 300.41032 * 19 17 16 21 21 F 1.39897 * 109.47003 * 60.41404 * 19 17 16 22 22 F 1.39902 * 109.47165 * 180.41530 * 19 17 16 23 23 O 1.43240 * 107.58930 * 21.35352 * 17 16 15 24 24 H 0.96994 * 119.99836 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.46832 * 59.99771 * 9 7 2 26 26 H 1.09001 * 109.46831 * 299.99812 * 9 7 2 27 27 H 1.09003 * 109.47110 * 59.99508 * 10 9 7 28 28 H 1.09000 * 109.46851 * 300.00012 * 10 9 7 29 29 H 1.00901 * 111.00346 * 303.95585 * 11 10 9 30 30 H 1.09001 * 109.46624 * 60.00456 * 12 11 10 31 31 H 1.08993 * 109.47653 * 300.00085 * 12 11 10 32 32 H 1.08997 * 111.12470 * 273.31972 * 15 13 12 33 33 H 1.08995 * 111.12619 * 37.48960 * 15 13 12 34 34 H 1.08998 * 110.85543 * 207.67443 * 16 15 13 35 35 H 1.09009 * 111.02412 * 84.13543 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4353 -6.0759 0.0006 13 6 1.6351 -7.3801 0.0019 14 1 0.9917 -7.4293 -0.8766 15 6 2.5904 -8.5995 0.0380 16 6 1.6679 -9.6780 0.6686 17 6 0.8073 -8.8445 1.6422 18 1 1.2129 -8.9193 2.6511 19 6 -0.6364 -9.3508 1.6226 20 9 -1.1520 -9.2397 0.3268 21 9 -0.6661 -10.6909 2.0231 22 9 -1.4112 -8.5845 2.4999 23 8 0.8506 -7.4825 1.2008 24 1 -0.4849 0.8400 0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8720 -3.6043 0.8905 28 1 2.8719 -3.6043 -0.8895 29 1 0.8746 -4.9842 0.7827 30 1 3.0638 -6.0348 0.8902 31 1 3.0626 -6.0350 -0.8898 32 1 2.8997 -8.8861 -0.9672 33 1 3.4549 -8.4027 0.6719 34 1 2.2536 -10.4222 1.2083 35 1 1.0456 -10.1526 -0.0902 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722382914.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:37 Heat of formation + Delta-G solvation = -235.749252 kcal Electronic energy + Delta-G solvation = -20579.476317 eV Core-core repulsion = 16774.859948 eV Total energy + Delta-G solvation = -3804.616369 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.12509 -48.64119 -48.63311 -40.78764 -37.40924 -35.09171 -33.40463 -32.75672 -30.69555 -27.82228 -25.90482 -24.17829 -22.92279 -22.30912 -21.94220 -19.73219 -19.30959 -18.90668 -18.50112 -17.88910 -16.87393 -16.59137 -16.32357 -15.54254 -15.51372 -15.43759 -15.06094 -14.96102 -14.80448 -14.77101 -14.51990 -14.35826 -14.14141 -13.69590 -13.49434 -13.04346 -12.83241 -12.78026 -12.57640 -12.35364 -12.12289 -11.94006 -11.87253 -11.39495 -11.19599 -10.84810 -10.56680 -9.28825 -8.19984 -6.32354 1.40767 1.43038 1.54003 1.62475 2.30415 2.41094 2.73006 2.93251 3.13316 3.25027 3.39678 3.45538 3.74917 4.00005 4.04904 4.19230 4.35111 4.48762 4.53618 4.61494 4.72378 4.82799 4.87820 4.95941 5.06960 5.18263 5.43924 5.65998 5.70588 5.79353 6.13260 6.28146 6.49968 6.85359 7.37275 8.92485 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.034736 B = 0.003430 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.876005 B = 8162.321798 C = 8697.714851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.971 3.029 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.063 0.937 9 C 0.029 3.971 10 C 0.085 3.915 11 N -0.701 5.701 12 C 0.063 3.937 13 C 0.074 3.926 14 H 0.074 0.926 15 C -0.133 4.133 16 C -0.142 4.142 17 C 0.038 3.962 18 H 0.145 0.855 19 C 0.435 3.565 20 F -0.190 7.190 21 F -0.177 7.177 22 F -0.192 7.192 23 O -0.376 6.376 24 H 0.264 0.736 25 H -0.007 1.007 26 H -0.014 1.014 27 H 0.019 0.981 28 H 0.064 0.936 29 H 0.338 0.662 30 H 0.039 0.961 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.983 -24.255 2.465 25.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.795 3.205 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.082 0.918 9 C -0.008 4.008 10 C -0.044 4.044 11 N -0.332 5.332 12 C -0.066 4.066 13 C 0.017 3.983 14 H 0.092 0.908 15 C -0.171 4.171 16 C -0.180 4.180 17 C -0.022 4.022 18 H 0.162 0.838 19 C 0.381 3.619 20 F -0.171 7.171 21 F -0.158 7.158 22 F -0.174 7.174 23 O -0.295 6.295 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.005 0.995 27 H 0.037 0.963 28 H 0.082 0.918 29 H 0.155 0.845 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.147 0.853 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.627 -23.992 1.874 24.714 hybrid contribution -0.277 0.920 0.857 1.287 sum 5.350 -23.072 2.731 23.841 Atomic orbital electron populations 1.70130 1.07993 1.27839 1.51434 1.26038 0.95770 1.03591 0.94561 0.85368 0.78596 0.78017 0.78567 1.19628 1.20798 1.18503 1.21627 0.93628 0.92129 1.50948 0.91833 1.18943 0.94414 0.92652 0.94832 1.21780 0.95486 0.88222 0.98931 1.60502 1.20402 1.02092 1.50232 1.22189 0.93990 0.88597 1.01843 1.23362 0.92271 0.95712 0.86944 0.90770 1.23295 0.97938 0.91394 1.04490 1.23243 0.97932 0.98651 0.98130 1.24186 0.88168 0.84944 1.04886 0.83813 1.21472 0.91864 0.75424 0.73179 1.93163 1.89255 1.95778 1.38919 1.93179 1.97053 1.34925 1.90645 1.93181 1.78516 1.75858 1.69841 1.88576 1.73373 1.23703 1.43838 0.92751 0.98887 0.99527 0.96284 0.91752 0.84451 0.94308 0.88514 0.86811 0.88203 0.85272 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.53 13.29 21.45 0.28 -58.24 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 4 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.03 1.61 5.23 29.85 0.16 1.77 16 10 C 0.08 3.64 5.62 86.30 0.49 4.12 16 11 N -0.70 -25.97 6.50 -513.90 -3.34 -29.31 16 12 C 0.06 1.65 5.45 86.30 0.47 2.12 16 13 C 0.07 1.61 3.70 31.26 0.12 1.72 16 14 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 15 C -0.13 -1.58 6.57 32.05 0.21 -1.37 16 16 C -0.14 -1.53 6.24 31.85 0.20 -1.33 16 17 C 0.04 0.66 3.50 31.06 0.11 0.77 16 18 H 0.14 1.84 8.14 -2.39 -0.02 1.82 16 19 C 0.43 9.31 2.80 71.98 0.20 9.51 16 20 F -0.19 -4.67 16.55 44.97 0.74 -3.93 16 21 F -0.18 -3.29 17.06 44.97 0.77 -2.52 16 22 F -0.19 -5.09 17.28 44.97 0.78 -4.32 16 23 O -0.38 -9.44 10.09 -148.98 -1.50 -10.94 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 29 H 0.34 13.20 8.26 -89.69 -0.74 12.46 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 33 H 0.10 0.96 8.06 -2.39 -0.02 0.95 16 34 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.09 1.00 7.35 -2.38 -0.02 0.98 16 Total: -1.00 -70.11 306.45 2.76 -67.36 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 0.36 Total: 8.95 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 2.64 Total: -13.87 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -3.06 Total: -87.56 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.50 Total: -10.94 kcal Atomic # 9 Polarization: -13.06 SS G_CDS: 2.29 Total: -10.77 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -70.11 2.76 -67.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722382914.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.390 kcal (2) G-P(sol) polarization free energy of solvation -70.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds