Wall clock time and date at job start Mon Mar 30 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47010 * 2 1 4 4 C 1.50707 * 109.46826 * 240.00308 * 2 1 3 5 5 H 1.07992 * 119.99862 * 239.99798 * 4 2 1 6 6 C 1.37878 * 119.99864 * 60.00076 * 4 2 1 7 7 N 1.31514 * 120.00356 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46903 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46860 * 119.99679 * 8 6 4 11 11 H 1.48493 * 109.47048 * 239.99904 * 8 6 4 12 12 N 1.46894 * 109.47461 * 120.00491 * 2 1 3 13 13 C 1.46899 * 110.99731 * 274.99848 * 12 2 1 14 14 C 1.53005 * 109.47152 * 179.97438 * 13 12 2 15 15 H 1.09002 * 110.33140 * 59.29835 * 14 13 12 16 16 C 1.54481 * 110.46871 * 181.61375 * 14 13 12 17 17 C 1.54506 * 104.06328 * 142.85832 * 16 14 13 18 18 C 1.54477 * 104.06393 * 359.97438 * 17 16 14 19 19 H 1.08998 * 110.37477 * 94.85232 * 18 17 16 20 20 C 1.53000 * 110.37108 * 217.19257 * 18 17 16 21 21 F 1.39901 * 109.46888 * 176.83372 * 20 18 17 22 22 F 1.39903 * 109.47091 * 296.83134 * 20 18 17 23 23 F 1.39900 * 109.47363 * 56.83254 * 20 18 17 24 24 O 1.44423 * 104.80156 * 336.01945 * 18 17 16 25 25 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46921 * 299.99934 * 1 2 3 27 27 H 1.08997 * 109.47136 * 59.99473 * 1 2 3 28 28 H 0.96999 * 120.00611 * 179.97438 * 7 6 4 29 29 H 1.00899 * 111.00630 * 151.04501 * 12 2 1 30 30 H 1.09001 * 109.47156 * 59.99859 * 13 12 2 31 31 H 1.09003 * 109.47612 * 299.99816 * 13 12 2 32 32 H 1.08996 * 110.51209 * 261.50459 * 16 14 13 33 33 H 1.09006 * 110.50965 * 24.21172 * 16 14 13 34 34 H 1.09006 * 110.50783 * 241.35215 * 17 16 14 35 35 H 1.09001 * 110.62960 * 118.70518 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1472 -2.2861 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0198 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 6 2.5953 -0.5333 3.5744 15 1 3.5859 -0.9444 3.3796 16 6 2.6322 0.3985 4.8059 17 6 2.2100 -0.5135 5.9795 18 6 1.9672 -1.8882 5.3181 19 1 2.8613 -2.5074 5.3905 20 6 0.7765 -2.5914 5.9728 21 9 0.5285 -3.8000 5.3134 22 9 1.0666 -2.8449 7.3178 23 9 -0.3543 -1.7722 5.8860 24 8 1.6751 -1.5864 3.9363 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.7087 1.1615 -3.4844 29 1 2.9174 -1.1206 1.0286 30 1 1.0872 0.6162 2.5525 31 1 2.7590 1.0461 2.1182 32 1 3.6399 0.7826 4.9642 33 1 1.9244 1.2187 4.6857 34 1 1.2934 -0.1441 6.4395 35 1 3.0073 -0.5808 6.7197 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722386042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:03 Heat of formation + Delta-G solvation = -203.674500 kcal Electronic energy + Delta-G solvation = -21060.692685 eV Core-core repulsion = 17257.467182 eV Total energy + Delta-G solvation = -3803.225504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -50.13946 -47.69206 -47.57540 -39.65682 -35.85179 -32.87294 -32.33526 -30.94087 -28.48032 -26.03427 -25.09951 -23.26960 -21.81521 -21.08495 -19.73209 -18.64902 -18.39167 -17.81891 -16.61537 -16.40193 -15.69444 -14.79851 -14.56748 -14.46122 -14.37903 -14.06920 -13.97735 -13.75341 -13.74858 -13.64283 -13.36501 -12.87483 -12.31962 -12.01672 -11.73797 -11.55638 -11.38732 -11.15398 -10.95625 -10.77515 -10.65431 -10.24823 -10.09709 -9.92478 -9.80911 -8.79991 -8.46861 -7.23785 -6.01737 -4.08011 2.48014 3.29484 3.35993 3.37473 3.41815 3.67225 3.89555 4.34517 4.41004 4.43995 4.60713 4.69160 4.92664 4.99433 5.29622 5.31597 5.48298 5.51174 5.62995 5.69619 5.89571 6.04519 6.32411 6.67213 6.92330 7.18184 7.26902 7.52115 7.79603 7.91531 8.29686 8.39602 8.67966 9.02696 9.57971 11.04659 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.004133 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.754280 B = 6773.888035 C = 7022.336188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.211 3.789 3 H 0.000 1.000 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.682 5.682 13 C 0.066 3.934 14 C 0.081 3.919 15 H 0.073 0.927 16 C -0.147 4.147 17 C -0.149 4.149 18 C 0.024 3.976 19 H 0.109 0.891 20 C 0.462 3.538 21 F -0.175 7.175 22 F -0.182 7.182 23 F -0.174 7.174 24 O -0.323 6.323 25 H 0.032 0.968 26 H 0.004 0.996 27 H 0.079 0.921 28 H 0.260 0.740 29 H 0.329 0.671 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.828 -2.114 18.632 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.104 3.896 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 N -0.313 5.313 13 C -0.064 4.064 14 C 0.023 3.977 15 H 0.091 0.909 16 C -0.186 4.186 17 C -0.186 4.186 18 C -0.036 4.036 19 H 0.127 0.873 20 C 0.408 3.592 21 F -0.156 7.156 22 F -0.163 7.163 23 F -0.155 7.155 24 O -0.241 6.241 25 H 0.051 0.949 26 H 0.023 0.977 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.146 0.854 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.919 -2.355 18.512 18.888 hybrid contribution 0.962 0.044 -0.839 1.277 sum 3.881 -2.311 17.673 18.241 Atomic orbital electron populations 1.21700 0.97789 0.99485 0.99220 1.19123 0.92762 0.92151 0.85559 0.98260 1.21302 1.31359 1.12459 0.90427 0.92144 1.24923 0.95050 0.95004 0.99062 1.69908 1.36694 1.22976 1.23343 0.86462 0.78617 0.79594 0.82854 1.19749 1.20963 1.21135 1.60672 1.32009 1.32821 1.05764 1.21994 1.00713 0.93607 0.90082 1.23264 0.92861 0.86661 0.94899 0.90937 1.22983 1.03047 0.99105 0.93422 1.22974 1.03745 0.92932 0.98991 1.24090 0.94172 0.98350 0.86972 0.87344 1.20250 0.84808 0.77744 0.76385 1.93222 1.95002 1.46778 1.80579 1.93177 1.93484 1.94472 1.35195 1.93200 1.54230 1.72217 1.95899 1.89453 1.58178 1.55817 1.20661 0.94871 0.97734 0.90195 0.92998 0.85356 0.90796 0.94501 0.89868 0.89678 0.89575 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.41 2.60 -68.86 -0.18 5.23 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.52 -14.29 8.59 -34.44 -0.30 -14.59 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.59 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.68 -14.71 6.24 -107.94 -0.67 -15.38 16 13 C 0.07 1.15 5.11 -3.82 -0.02 1.13 16 14 C 0.08 1.10 3.48 -25.95 -0.09 1.01 16 15 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 16 C -0.15 -1.48 6.63 -25.16 -0.17 -1.65 16 17 C -0.15 -1.36 6.40 -25.17 -0.16 -1.52 16 18 C 0.02 0.28 3.26 -25.96 -0.08 0.20 16 19 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 20 C 0.46 5.79 2.86 37.16 0.11 5.89 16 21 F -0.17 -2.50 17.30 2.25 0.04 -2.46 16 22 F -0.18 -2.01 17.15 2.25 0.04 -1.97 16 23 F -0.17 -2.43 16.45 2.25 0.04 -2.40 16 24 O -0.32 -5.07 10.90 -35.23 -0.38 -5.46 16 25 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 27 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.33 6.84 8.22 -39.29 -0.32 6.52 16 30 H 0.07 1.36 7.44 -51.93 -0.39 0.98 16 31 H 0.04 0.61 8.06 -51.93 -0.42 0.20 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.87 7.88 -51.93 -0.41 0.46 16 34 H 0.09 0.80 7.27 -51.93 -0.38 0.42 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -30.14 300.47 -6.12 -36.26 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: -4.67 Total: 1.01 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -0.64 Total: -5.52 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.05 Total: -40.34 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.38 Total: -5.46 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.14 -6.12 -36.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722386042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.411 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds