Wall clock time and date at job start Mon Mar 30 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.47010 * 2 1 4 4 C 1.50707 * 109.46826 * 240.00308 * 2 1 3 5 5 H 1.07992 * 119.99862 * 239.99798 * 4 2 1 6 6 C 1.37878 * 119.99864 * 60.00076 * 4 2 1 7 7 N 1.31514 * 120.00356 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99882 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46903 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46860 * 119.99679 * 8 6 4 11 11 H 1.48493 * 109.47048 * 239.99904 * 8 6 4 12 12 N 1.46894 * 109.47461 * 120.00491 * 2 1 3 13 13 C 1.46899 * 110.99731 * 274.99848 * 12 2 1 14 14 C 1.53005 * 109.47152 * 179.97438 * 13 12 2 15 15 H 1.09002 * 110.33140 * 59.29835 * 14 13 12 16 16 C 1.54481 * 110.46871 * 181.61375 * 14 13 12 17 17 C 1.54506 * 104.06328 * 142.85832 * 16 14 13 18 18 C 1.54477 * 104.06393 * 359.97438 * 17 16 14 19 19 H 1.08998 * 110.37477 * 94.85232 * 18 17 16 20 20 C 1.53000 * 110.37108 * 217.19257 * 18 17 16 21 21 F 1.39901 * 109.46888 * 176.83372 * 20 18 17 22 22 F 1.39903 * 109.47091 * 296.83134 * 20 18 17 23 23 F 1.39900 * 109.47363 * 56.83254 * 20 18 17 24 24 O 1.44423 * 104.80156 * 336.01945 * 18 17 16 25 25 H 1.08993 * 109.47008 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46921 * 299.99934 * 1 2 3 27 27 H 1.08997 * 109.47136 * 59.99473 * 1 2 3 28 28 H 0.96999 * 120.00611 * 179.97438 * 7 6 4 29 29 H 1.00899 * 111.00630 * 151.04501 * 12 2 1 30 30 H 1.09001 * 109.47156 * 59.99859 * 13 12 2 31 31 H 1.09003 * 109.47612 * 299.99816 * 13 12 2 32 32 H 1.08996 * 110.51209 * 261.50459 * 16 14 13 33 33 H 1.09006 * 110.50965 * 24.21172 * 16 14 13 34 34 H 1.09006 * 110.50783 * 241.35215 * 17 16 14 35 35 H 1.09001 * 110.62960 * 118.70518 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 3.1472 -2.2861 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1855 -4.8162 12 7 2.0198 -0.6926 1.1993 13 6 2.0826 0.2225 2.3468 14 6 2.5953 -0.5333 3.5744 15 1 3.5859 -0.9444 3.3796 16 6 2.6322 0.3985 4.8059 17 6 2.2100 -0.5135 5.9795 18 6 1.9672 -1.8882 5.3181 19 1 2.8613 -2.5074 5.3905 20 6 0.7765 -2.5914 5.9728 21 9 0.5285 -3.8000 5.3134 22 9 1.0666 -2.8449 7.3178 23 9 -0.3543 -1.7722 5.8860 24 8 1.6751 -1.5864 3.9363 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 0.7087 1.1615 -3.4844 29 1 2.9174 -1.1206 1.0286 30 1 1.0872 0.6162 2.5525 31 1 2.7590 1.0461 2.1182 32 1 3.6399 0.7826 4.9642 33 1 1.9244 1.2187 4.6857 34 1 1.2934 -0.1441 6.4395 35 1 3.0073 -0.5808 6.7197 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000722386042.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:03 Heat of formation + Delta-G solvation = -223.943984 kcal Electronic energy + Delta-G solvation = -21061.571636 eV Core-core repulsion = 17257.467182 eV Total energy + Delta-G solvation = -3804.104454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.13166 -48.65240 -48.63088 -40.65645 -37.63753 -34.71053 -33.24907 -32.36844 -30.07243 -27.57770 -26.96281 -24.42449 -22.81093 -22.13131 -21.66746 -19.64148 -19.37710 -18.89689 -18.42600 -17.51850 -16.88610 -16.61524 -15.85157 -15.54178 -15.44324 -15.39081 -15.07123 -14.94346 -14.78496 -14.76979 -14.62634 -14.58513 -13.67238 -13.53052 -12.99801 -12.85918 -12.78494 -12.62965 -12.54654 -12.33616 -12.20202 -12.11158 -11.74945 -11.52072 -10.92244 -10.87376 -10.57794 -9.00219 -8.13305 -6.27419 1.41590 1.43922 1.54244 1.55630 2.39343 2.42190 2.75501 2.96940 3.15307 3.39817 3.47835 3.68365 3.81108 3.93989 4.08402 4.28484 4.41426 4.49063 4.71534 4.79570 4.86144 4.91621 4.95647 5.07171 5.14894 5.22190 5.45230 5.65389 5.72193 5.85236 6.21851 6.47864 6.79259 7.02115 7.43168 8.92755 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.032827 B = 0.004133 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.754280 B = 6773.888035 C = 7022.336188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.216 3.784 3 H -0.026 1.026 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.278 1.278 12 N -0.687 5.687 13 C 0.065 3.935 14 C 0.082 3.918 15 H 0.088 0.912 16 C -0.140 4.140 17 C -0.141 4.141 18 C 0.022 3.978 19 H 0.135 0.865 20 C 0.459 3.541 21 F -0.189 7.189 22 F -0.171 7.171 23 F -0.187 7.187 24 O -0.363 6.363 25 H 0.022 0.978 26 H 0.018 0.982 27 H 0.057 0.943 28 H 0.263 0.737 29 H 0.333 0.667 30 H 0.057 0.943 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.381 -2.448 19.751 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 H -0.009 1.009 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.208 1.208 11 H -0.204 1.204 12 N -0.318 5.318 13 C -0.065 4.065 14 C 0.025 3.975 15 H 0.106 0.894 16 C -0.178 4.178 17 C -0.179 4.179 18 C -0.038 4.038 19 H 0.152 0.848 20 C 0.405 3.595 21 F -0.171 7.171 22 F -0.153 7.153 23 F -0.168 7.168 24 O -0.283 6.283 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.131 0.869 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 4.480 -2.691 19.659 20.342 hybrid contribution 0.445 0.149 -1.120 1.214 sum 4.925 -2.542 18.539 19.350 Atomic orbital electron populations 1.21536 0.98221 0.98505 0.98793 1.18913 0.92430 0.90920 0.87004 1.00859 1.21617 1.31628 1.12639 0.91597 0.92256 1.25748 0.95148 0.95678 1.02093 1.70029 1.37498 1.24154 1.24135 0.85415 0.78072 0.78611 0.78955 1.19054 1.20805 1.20373 1.60550 1.32376 1.33526 1.05305 1.22048 1.00330 0.93828 0.90250 1.23252 0.92687 0.87019 0.94539 0.89376 1.22967 1.04778 0.98249 0.91773 1.23024 1.04888 0.90896 0.99056 1.24379 0.94164 1.00024 0.85205 0.84752 1.20515 0.84897 0.77214 0.76844 1.93191 1.95141 1.47747 1.80996 1.93193 1.93335 1.94387 1.34358 1.93173 1.55133 1.72507 1.96005 1.89396 1.59187 1.56514 1.23164 0.95909 0.96320 0.92392 0.92828 0.84906 0.92439 0.93679 0.86870 0.90254 0.89887 0.85689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.90 9.19 71.98 0.66 -5.23 16 2 C 0.22 11.25 2.60 44.17 0.11 11.36 16 3 H -0.03 -1.47 7.80 -2.39 -0.02 -1.49 16 4 C -0.54 -29.91 8.59 25.60 0.22 -29.69 16 5 H 0.06 3.24 7.62 -2.91 -0.02 3.22 16 6 C 0.01 0.69 5.30 84.65 0.45 1.14 16 7 N -0.92 -53.46 11.32 21.45 0.24 -53.21 16 8 Si 0.96 43.78 29.54 68.60 2.03 45.80 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 10 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.69 -29.71 6.24 -495.42 -3.09 -32.80 16 13 C 0.07 2.23 5.11 86.30 0.44 2.67 16 14 C 0.08 2.10 3.48 31.10 0.11 2.20 16 15 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 16 C -0.14 -2.39 6.63 31.61 0.21 -2.18 16 17 C -0.14 -2.11 6.40 31.61 0.20 -1.91 16 18 C 0.02 0.45 3.26 31.10 0.10 0.55 16 19 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 20 C 0.46 10.89 2.86 71.98 0.21 11.10 16 21 F -0.19 -5.33 17.30 44.97 0.78 -4.55 16 22 F -0.17 -3.44 17.15 44.97 0.77 -2.67 16 23 F -0.19 -5.12 16.45 44.97 0.74 -4.38 16 24 O -0.36 -10.98 10.90 -148.98 -1.62 -12.60 16 25 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.02 0.87 7.45 -2.39 -0.02 0.85 16 27 H 0.06 3.29 6.07 -2.39 -0.01 3.27 16 28 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 29 H 0.33 13.78 8.22 -89.69 -0.74 13.04 16 30 H 0.06 2.14 7.44 -2.39 -0.02 2.12 16 31 H 0.05 1.47 8.06 -2.39 -0.02 1.45 16 32 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.46 7.88 -2.38 -0.02 1.44 16 34 H 0.08 1.32 7.27 -2.38 -0.02 1.30 16 35 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -65.49 300.47 2.92 -62.57 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 0.37 Total: 11.82 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: 2.71 Total: -9.98 kcal Atomic # 7 Polarization: -83.17 SS G_CDS: -2.85 Total: -86.02 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: -1.62 Total: -12.60 kcal Atomic # 9 Polarization: -13.89 SS G_CDS: 2.29 Total: -11.60 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.80 kcal Total: -65.49 2.92 -62.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722386042.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.378 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds