Wall clock time and date at job start Mon Mar 30 2020 06:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 C 1.50697 * 109.46971 * 240.00274 * 2 1 3 5 5 H 1.08006 * 119.99978 * 240.00485 * 4 2 1 6 6 C 1.37872 * 120.00702 * 59.99791 * 4 2 1 7 7 N 1.31516 * 119.99666 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00606 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47124 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.47320 * 120.00392 * 8 6 4 11 11 H 1.48504 * 109.47285 * 240.00316 * 8 6 4 12 12 N 1.46905 * 109.46955 * 120.00286 * 2 1 3 13 13 C 1.46900 * 110.99694 * 274.99755 * 12 2 1 14 14 C 1.53000 * 109.46802 * 180.02562 * 13 12 2 15 15 H 1.09002 * 109.87241 * 305.70154 * 14 13 12 16 16 C 1.54104 * 109.87555 * 184.69515 * 14 13 12 17 17 C 1.54810 * 104.18431 * 242.45463 * 16 14 13 18 18 C 1.54992 * 102.09319 * 20.88493 * 17 16 14 19 19 H 1.09000 * 110.62144 * 81.47982 * 18 17 16 20 20 C 1.53005 * 110.61837 * 204.47354 * 18 17 16 21 21 F 1.39904 * 109.47186 * 59.99792 * 20 18 17 22 22 F 1.39901 * 109.47345 * 180.02562 * 20 18 17 23 23 F 1.39901 * 109.46778 * 300.00015 * 20 18 17 24 24 O 1.43749 * 110.00170 * 66.79059 * 14 13 12 25 25 H 1.08993 * 109.47149 * 299.99857 * 1 2 3 26 26 H 1.09005 * 109.46722 * 60.00113 * 1 2 3 27 27 H 1.09002 * 109.46913 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00718 * 179.97438 * 7 6 4 29 29 H 1.00901 * 110.99600 * 38.95512 * 12 2 1 30 30 H 1.09001 * 109.46869 * 60.00143 * 13 12 2 31 31 H 1.08997 * 109.46933 * 300.00328 * 13 12 2 32 32 H 1.08993 * 110.48779 * 1.13327 * 16 14 13 33 33 H 1.08998 * 110.48521 * 123.78551 * 16 14 13 34 34 H 1.09003 * 110.90220 * 139.08406 * 17 16 14 35 35 H 1.09001 * 110.90891 * 262.68043 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2862 -3.6038 10 1 1.1679 -1.5865 -4.8165 11 1 3.1473 -0.1857 -4.8161 12 7 2.0197 -0.6926 1.1995 13 6 2.0825 0.2225 2.3469 14 6 2.5963 -0.5330 3.5741 15 1 1.9828 -1.4170 3.7487 16 6 2.5548 0.3860 4.8104 17 6 4.0367 0.5099 5.2409 18 6 4.7860 0.1256 3.9397 19 1 4.8412 0.9779 3.2625 20 6 6.1864 -0.4013 4.2599 21 9 6.0835 -1.5338 5.0749 22 9 6.8405 -0.7399 3.0705 23 9 6.9157 0.5887 4.9272 24 8 3.9662 -0.9203 3.3752 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7095 1.1619 -3.4844 29 1 1.4496 -1.4980 1.4099 30 1 1.0871 0.6162 2.5525 31 1 2.7589 1.0461 2.1182 32 1 2.1514 1.3634 4.5459 33 1 1.9637 -0.0696 5.6048 34 1 4.2714 1.5322 5.5375 35 1 4.2682 -0.1896 6.0442 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000722386048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:14 Heat of formation + Delta-G solvation = -203.122182 kcal Electronic energy + Delta-G solvation = -21155.277727 eV Core-core repulsion = 17352.076174 eV Total energy + Delta-G solvation = -3803.201553 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.09663 -47.65335 -47.53696 -39.74618 -35.89960 -32.78230 -32.32743 -30.92878 -28.49711 -25.87419 -25.09263 -23.48215 -21.70274 -20.93154 -20.16033 -18.68771 -18.27664 -17.98234 -16.45301 -16.26448 -15.42838 -14.73644 -14.68088 -14.54342 -14.36542 -14.08194 -13.99773 -13.72108 -13.71375 -13.44873 -13.14399 -12.96201 -12.40616 -11.93760 -11.81478 -11.55800 -11.39800 -11.26727 -10.95873 -10.90293 -10.73212 -10.45181 -10.13938 -9.97693 -9.57443 -8.95409 -8.34687 -7.19871 -5.96742 -3.99275 2.52222 3.34001 3.37945 3.41667 3.48411 3.71050 3.94991 4.37120 4.40486 4.49355 4.67397 4.79455 4.90921 5.05437 5.33613 5.35510 5.47572 5.53021 5.63012 5.68606 5.79751 6.05491 6.31568 6.66142 6.73209 6.81855 7.07755 7.35835 7.73335 7.91272 8.28105 8.54201 8.63142 9.09066 9.66250 11.10518 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.004798 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.551676 B = 5834.146513 C = 6600.937987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.032 0.968 4 C -0.491 4.491 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.676 5.676 13 C 0.042 3.958 14 C 0.081 3.919 15 H 0.099 0.901 16 C -0.147 4.147 17 C -0.148 4.148 18 C 0.029 3.971 19 H 0.114 0.886 20 C 0.464 3.536 21 F -0.177 7.177 22 F -0.173 7.173 23 F -0.181 7.181 24 O -0.328 6.328 25 H 0.003 0.997 26 H 0.089 0.911 27 H 0.028 0.972 28 H 0.258 0.742 29 H 0.325 0.675 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 0.818 17.253 17.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.530 4.530 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.212 1.212 12 N -0.306 5.306 13 C -0.088 4.088 14 C 0.024 3.976 15 H 0.117 0.883 16 C -0.185 4.185 17 C -0.186 4.186 18 C -0.031 4.031 19 H 0.131 0.869 20 C 0.409 3.591 21 F -0.159 7.159 22 F -0.154 7.154 23 F -0.162 7.162 24 O -0.247 6.247 25 H 0.022 0.978 26 H 0.108 0.892 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.141 0.859 30 H 0.048 0.952 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.753 0.802 16.832 17.806 hybrid contribution -0.570 -0.136 -0.607 0.844 sum 5.183 0.666 16.225 17.045 Atomic orbital electron populations 1.22441 1.00769 0.99213 1.00417 1.19188 0.89487 0.94356 0.86658 0.95034 1.21216 1.29879 1.12391 0.89535 0.91799 1.24952 0.95375 0.95236 0.99078 1.69889 1.37608 1.23314 1.23199 0.86451 0.78499 0.79728 0.82811 1.19671 1.21245 1.21159 1.60738 1.58117 1.08652 1.03055 1.22426 0.98595 0.96325 0.91478 1.22988 0.82787 0.98165 0.93703 0.88340 1.22978 0.95978 1.01462 0.98071 1.23177 0.95359 1.03688 0.96370 1.24230 0.87871 0.93448 0.97561 0.86850 1.20230 0.88521 0.75681 0.74635 1.93179 1.96352 1.52826 1.73535 1.93239 1.83252 1.92468 1.46446 1.93177 1.79767 1.62038 1.81230 1.89096 1.15994 1.39857 1.79719 0.97753 0.89245 0.95294 0.93183 0.85860 0.95151 0.91445 0.89704 0.89771 0.88889 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.01 8.94 37.16 0.33 -3.68 16 2 C 0.21 5.28 2.57 -68.86 -0.18 5.11 16 3 H 0.03 0.87 7.80 -51.93 -0.40 0.46 16 4 C -0.49 -13.78 8.84 -34.44 -0.30 -14.09 16 5 H 0.06 1.84 7.81 -52.48 -0.41 1.42 16 6 C 0.05 1.50 5.30 -17.82 -0.09 1.41 16 7 N -0.90 -25.87 11.32 55.43 0.63 -25.24 16 8 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 N -0.68 -14.26 6.21 -107.95 -0.67 -14.94 16 13 C 0.04 0.70 4.89 -3.82 -0.02 0.69 16 14 C 0.08 1.10 3.63 -26.15 -0.09 1.00 16 15 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 16 C -0.15 -1.41 6.64 -25.20 -0.17 -1.58 16 17 C -0.15 -1.38 6.34 -24.73 -0.16 -1.54 16 18 C 0.03 0.36 3.24 -25.68 -0.08 0.28 16 19 H 0.11 1.37 8.06 -51.93 -0.42 0.95 16 20 C 0.46 6.01 2.93 37.16 0.11 6.12 16 21 F -0.18 -2.38 16.58 2.25 0.04 -2.34 16 22 F -0.17 -2.63 17.32 2.25 0.04 -2.59 16 23 F -0.18 -2.11 17.08 2.25 0.04 -2.07 16 24 O -0.33 -5.16 10.77 -35.23 -0.38 -5.54 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.31 16 26 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 27 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.32 6.49 8.47 -39.29 -0.33 6.15 16 30 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 31 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 32 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.78 7.55 -51.93 -0.39 0.38 16 LS Contribution 300.61 15.07 4.53 4.53 Total: -1.00 -30.06 300.61 -6.14 -36.20 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.68 Total: 1.48 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: -0.66 Total: -6.29 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: -0.04 Total: -40.18 kcal Atomic # 8 Polarization: -5.16 SS G_CDS: -0.38 Total: -5.54 kcal Atomic # 9 Polarization: -7.12 SS G_CDS: 0.11 Total: -7.00 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.06 -6.14 -36.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000722386048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.921 kcal (2) G-P(sol) polarization free energy of solvation -30.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -203.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds