Wall clock time and date at job start Mon Mar 30 2020 04:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39759 * 125.83734 * 2 1 4 4 C 1.36102 * 107.82919 * 180.02562 * 3 2 1 5 5 N 1.39481 * 126.21741 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99680 * 0.02562 * 5 4 3 7 7 O 1.21292 * 120.00185 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99769 * 180.02562 * 6 5 4 9 9 F 1.39897 * 115.56449 * 34.31409 * 8 6 5 10 10 C 1.53000 * 117.50175 * 248.62488 * 8 6 5 11 11 C 1.52997 * 60.00347 * 252.51187 * 10 8 6 12 12 N 1.35255 * 107.56776 * 0.26107 * 4 3 2 13 13 C 1.46505 * 126.04870 * 179.73363 * 12 4 3 14 14 C 1.50706 * 109.46784 * 90.00457 * 13 12 4 15 15 H 1.07992 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99734 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99859 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00404 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46821 * 90.00103 * 18 16 14 20 20 H 1.48499 * 109.47233 * 210.00654 * 18 16 14 21 21 H 1.48499 * 109.46899 * 330.00389 * 18 16 14 22 22 N 1.30845 * 125.84043 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.46633 * 90.00479 * 1 2 3 24 24 H 1.08997 * 109.47177 * 209.99760 * 1 2 3 25 25 H 1.08997 * 109.46996 * 330.00189 * 1 2 3 26 26 H 1.08006 * 126.08345 * 359.97438 * 3 2 1 27 27 H 0.96996 * 119.99974 * 180.02562 * 5 4 3 28 28 H 1.09002 * 117.49696 * 0.02562 * 10 8 6 29 29 H 1.09002 * 117.50343 * 145.02291 * 10 8 6 30 30 H 1.08999 * 117.49685 * 252.51237 * 11 10 8 31 31 H 1.08997 * 117.50044 * 107.48590 * 11 10 8 32 32 H 1.09000 * 109.47166 * 210.00426 * 13 12 4 33 33 H 1.09001 * 109.47085 * 330.00658 * 13 12 4 34 34 H 0.96999 * 120.00299 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0006 5 7 4.7513 1.5276 -0.0003 6 6 4.6156 2.8686 0.0012 7 8 3.5095 3.3662 0.0027 8 6 5.8382 3.7495 0.0009 9 9 6.9367 3.2575 -0.7120 10 6 6.1234 4.5626 1.2653 11 6 5.6180 5.2637 0.0028 12 7 3.6092 -0.6403 -0.0068 13 6 4.7871 -1.5114 -0.0151 14 6 5.1960 -1.8168 1.4030 15 1 4.6349 -1.4030 2.2277 16 6 6.2870 -2.6236 1.6472 17 7 6.6435 -2.8905 2.8847 18 14 7.2579 -3.3388 0.2207 19 1 8.3474 -2.4025 -0.1553 20 1 7.8430 -4.6426 0.6244 21 1 6.3551 -3.5400 -0.9411 22 7 2.2732 -1.0607 -0.0005 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9901 2.1597 -0.0004 27 1 5.6358 1.1296 -0.0011 28 1 5.4269 4.4599 2.0974 29 1 7.1669 4.7141 1.5416 30 1 6.3290 5.8763 -0.5515 31 1 4.5888 5.6225 0.0042 32 1 4.5481 -2.4406 -0.5324 33 1 5.6066 -1.0095 -0.5295 34 1 7.4108 -3.4584 3.0567 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843536936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:08 Heat of formation + Delta-G solvation = 26.832030 kcal Electronic energy + Delta-G solvation = -20170.955188 eV Core-core repulsion = 16828.414384 eV Total energy + Delta-G solvation = -3342.540804 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.97545 -41.01969 -39.48380 -36.15997 -34.84629 -33.80201 -32.19999 -29.61636 -28.60201 -26.36990 -24.95573 -22.94633 -22.49550 -21.03294 -19.85854 -19.48433 -17.78171 -17.22030 -16.82326 -16.07852 -15.73404 -15.20301 -14.83133 -14.59008 -14.28045 -13.83212 -13.77917 -13.48413 -13.13298 -12.75238 -12.65969 -12.37430 -11.95389 -11.90853 -11.88903 -11.37293 -11.17212 -10.84396 -10.59529 -10.38479 -10.26947 -10.04095 -9.79176 -9.67494 -8.87273 -8.03049 -7.59121 -6.34813 -4.39599 1.86889 2.47149 2.82420 3.07762 3.16768 3.17947 3.30070 3.47028 3.52187 3.80679 4.13803 4.22884 4.38780 4.54635 4.91193 5.24395 5.27401 5.44350 5.52557 5.58183 5.73286 5.96142 5.99670 6.03773 6.14493 6.22368 6.32537 6.54452 6.69476 7.17909 7.34366 7.42492 7.62250 8.00656 8.22800 8.49723 8.70453 9.19718 10.77327 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.007637 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.474041 B = 3665.428794 C = 5277.963763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.290 4.290 4 C 0.302 3.698 5 N -0.628 5.628 6 C 0.548 3.452 7 O -0.497 6.497 8 C 0.007 3.993 9 F -0.164 7.164 10 C -0.157 4.157 11 C -0.147 4.147 12 N -0.341 5.341 13 C 0.228 3.772 14 C -0.547 4.547 15 H 0.082 0.918 16 C 0.081 3.919 17 N -0.882 5.882 18 Si 0.871 3.129 19 H -0.270 1.270 20 H -0.278 1.278 21 H -0.263 1.263 22 N -0.279 5.279 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.163 0.837 27 H 0.420 0.580 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 13.769 -6.172 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.322 4.322 4 C 0.080 3.920 5 N -0.274 5.274 6 C 0.332 3.668 7 O -0.371 6.371 8 C -0.015 4.015 9 F -0.144 7.144 10 C -0.195 4.195 11 C -0.185 4.185 12 N -0.126 5.126 13 C 0.109 3.891 14 C -0.585 4.585 15 H 0.100 0.900 16 C -0.124 4.124 17 N -0.519 5.519 18 Si 0.696 3.304 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.187 1.187 22 N -0.104 5.104 23 H 0.088 0.912 24 H 0.087 0.913 25 H 0.090 0.910 26 H 0.181 0.819 27 H 0.257 0.743 28 H 0.137 0.863 29 H 0.137 0.863 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.155 12.650 -6.077 14.198 hybrid contribution 1.578 -0.081 -0.602 1.691 sum -0.577 12.569 -6.678 14.245 Atomic orbital electron populations 1.20042 0.87263 1.02692 1.02164 1.22064 0.96655 0.90861 1.01413 1.21268 0.88881 1.00582 1.21436 1.17873 0.87835 0.83193 1.03111 1.42602 1.08765 1.05299 1.70768 1.19296 0.89247 0.81365 0.76885 1.90673 1.24925 1.73672 1.47808 1.20998 0.84808 0.93538 1.02183 1.92902 1.53605 1.88837 1.79017 1.23745 1.04789 0.99044 0.91875 1.23686 1.05282 0.89759 0.99783 1.48931 1.06301 1.01894 1.55458 1.19983 0.79218 0.90077 0.99821 1.21176 1.14287 1.32760 0.90286 0.90025 1.24813 0.96557 0.95156 0.95852 1.69867 1.26683 1.36453 1.18870 0.86931 0.80850 0.79738 0.82859 1.19554 1.20274 1.18729 1.77383 0.85698 1.21719 1.25559 0.91237 0.91307 0.90961 0.81935 0.74270 0.86316 0.86255 0.86577 0.85673 0.92569 0.94660 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.90 10.44 36.01 0.38 -0.53 16 2 C 0.06 1.09 7.21 -82.44 -0.59 0.49 16 3 C -0.29 -5.82 9.58 -39.78 -0.38 -6.20 16 4 C 0.30 6.34 7.66 -153.16 -1.17 5.17 16 5 N -0.63 -11.33 5.40 -11.46 -0.06 -11.40 16 6 C 0.55 8.78 7.52 -10.99 -0.08 8.69 16 7 O -0.50 -8.65 13.39 5.55 0.07 -8.58 16 8 C 0.01 0.08 3.67 -91.77 -0.34 -0.25 16 9 F -0.16 -2.22 17.32 2.25 0.04 -2.18 16 10 C -0.16 -1.52 10.22 -26.73 -0.27 -1.80 16 11 C -0.15 -1.37 10.03 -26.73 -0.27 -1.64 16 12 N -0.34 -7.90 3.60 -61.57 -0.22 -8.12 16 13 C 0.23 5.43 5.07 -5.19 -0.03 5.40 16 14 C -0.55 -15.07 9.94 -34.44 -0.34 -15.41 16 15 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 16 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 17 N -0.88 -25.77 13.96 55.43 0.77 -25.00 16 18 Si 0.87 19.78 27.47 -169.99 -4.67 15.11 16 19 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 22 N -0.28 -6.38 12.56 33.65 0.42 -5.96 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.16 3.11 5.83 -52.48 -0.31 2.80 16 27 H 0.42 7.22 7.79 -40.82 -0.32 6.90 16 28 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.13 1.16 7.67 -51.93 -0.40 0.76 16 32 H 0.06 1.35 7.20 -51.93 -0.37 0.98 16 33 H 0.04 0.77 6.93 -51.93 -0.36 0.41 16 34 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 301.91 15.07 4.55 4.55 Total: -1.00 -32.05 301.91 -6.18 -38.23 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -3.88 Total: 7.28 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.20 Total: -3.94 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.91 Total: -50.47 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.11 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.05 -6.18 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843536936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.060 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds