Wall clock time and date at job start Mon Mar 30 2020 04:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39759 * 125.83734 * 2 1 4 4 C 1.36102 * 107.82919 * 180.02562 * 3 2 1 5 5 N 1.39481 * 126.21741 * 180.02562 * 4 3 2 6 6 C 1.34777 * 119.99680 * 0.02562 * 5 4 3 7 7 O 1.21292 * 120.00185 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.99769 * 180.02562 * 6 5 4 9 9 F 1.39897 * 115.56449 * 34.31409 * 8 6 5 10 10 C 1.53000 * 117.50175 * 248.62488 * 8 6 5 11 11 C 1.52997 * 60.00347 * 252.51187 * 10 8 6 12 12 N 1.35255 * 107.56776 * 0.26107 * 4 3 2 13 13 C 1.46505 * 126.04870 * 179.73363 * 12 4 3 14 14 C 1.50706 * 109.46784 * 90.00457 * 13 12 4 15 15 H 1.07992 * 119.99822 * 359.97438 * 14 13 12 16 16 C 1.37874 * 119.99734 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99859 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 120.00404 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.46821 * 90.00103 * 18 16 14 20 20 H 1.48499 * 109.47233 * 210.00654 * 18 16 14 21 21 H 1.48499 * 109.46899 * 330.00389 * 18 16 14 22 22 N 1.30845 * 125.84043 * 180.02562 * 2 1 3 23 23 H 1.09007 * 109.46633 * 90.00479 * 1 2 3 24 24 H 1.08997 * 109.47177 * 209.99760 * 1 2 3 25 25 H 1.08997 * 109.46996 * 330.00189 * 1 2 3 26 26 H 1.08006 * 126.08345 * 359.97438 * 3 2 1 27 27 H 0.96996 * 119.99974 * 180.02562 * 5 4 3 28 28 H 1.09002 * 117.49696 * 0.02562 * 10 8 6 29 29 H 1.09002 * 117.50343 * 145.02291 * 10 8 6 30 30 H 1.08999 * 117.49685 * 252.51237 * 11 10 8 31 31 H 1.08997 * 117.50044 * 107.48590 * 11 10 8 32 32 H 1.09000 * 109.47166 * 210.00426 * 13 12 4 33 33 H 1.09001 * 109.47085 * 330.00658 * 13 12 4 34 34 H 0.96999 * 120.00299 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6196 0.7122 -0.0006 5 7 4.7513 1.5276 -0.0003 6 6 4.6156 2.8686 0.0012 7 8 3.5095 3.3662 0.0027 8 6 5.8382 3.7495 0.0009 9 9 6.9367 3.2575 -0.7120 10 6 6.1234 4.5626 1.2653 11 6 5.6180 5.2637 0.0028 12 7 3.6092 -0.6403 -0.0068 13 6 4.7871 -1.5114 -0.0151 14 6 5.1960 -1.8168 1.4030 15 1 4.6349 -1.4030 2.2277 16 6 6.2870 -2.6236 1.6472 17 7 6.6435 -2.8905 2.8847 18 14 7.2579 -3.3388 0.2207 19 1 8.3474 -2.4025 -0.1553 20 1 7.8430 -4.6426 0.6244 21 1 6.3551 -3.5400 -0.9411 22 7 2.2732 -1.0607 -0.0005 23 1 -0.3633 -0.0001 -1.0278 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8900 0.5138 26 1 1.9901 2.1597 -0.0004 27 1 5.6358 1.1296 -0.0011 28 1 5.4269 4.4599 2.0974 29 1 7.1669 4.7141 1.5416 30 1 6.3290 5.8763 -0.5515 31 1 4.5888 5.6225 0.0042 32 1 4.5481 -2.4406 -0.5324 33 1 5.6066 -1.0095 -0.5295 34 1 7.4108 -3.4584 3.0567 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843536936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:51:08 Heat of formation + Delta-G solvation = 5.677396 kcal Electronic energy + Delta-G solvation = -20171.872522 eV Core-core repulsion = 16828.414384 eV Total energy + Delta-G solvation = -3343.458138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.96427 -42.55339 -40.82979 -37.12887 -36.30529 -35.61974 -34.04180 -31.22880 -30.16250 -28.06266 -26.17777 -24.36644 -23.68499 -22.38468 -21.38246 -20.79390 -19.31209 -19.05599 -18.34669 -17.22594 -17.05302 -16.59917 -16.23075 -16.00601 -15.78291 -15.29901 -14.99039 -14.66331 -14.52932 -14.32218 -14.22112 -13.80803 -13.56654 -13.18970 -12.98886 -12.63761 -12.57893 -12.28769 -12.21000 -11.92349 -11.85193 -11.48934 -11.29793 -11.04922 -10.95306 -9.70042 -9.19319 -8.46419 -6.59112 0.50827 1.08912 1.30335 1.33506 1.37558 1.43374 1.90760 1.98215 2.21130 2.44446 2.76839 2.84798 3.13548 3.59103 3.67623 3.72071 4.11119 4.38460 4.47139 4.57373 4.58319 4.70251 4.71666 4.83235 4.88737 4.89934 5.03148 5.08358 5.14214 5.17941 5.80973 5.89392 6.01678 6.21041 6.44095 6.65320 6.89256 7.05701 8.69907 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.013226 B = 0.007637 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.474041 B = 3665.428794 C = 5277.963763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.063 3.937 3 C -0.300 4.300 4 C 0.296 3.704 5 N -0.634 5.634 6 C 0.546 3.454 7 O -0.513 6.513 8 C -0.022 4.022 9 F -0.170 7.170 10 C -0.144 4.144 11 C -0.122 4.122 12 N -0.366 5.366 13 C 0.237 3.763 14 C -0.555 4.555 15 H 0.025 0.975 16 C 0.027 3.973 17 N -0.932 5.932 18 Si 0.946 3.054 19 H -0.249 1.249 20 H -0.275 1.275 21 H -0.247 1.247 22 N -0.324 5.324 23 H 0.094 0.906 24 H 0.072 0.928 25 H 0.095 0.905 26 H 0.173 0.827 27 H 0.421 0.579 28 H 0.117 0.883 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.126 0.874 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.168 15.235 -7.820 17.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C -0.332 4.332 4 C 0.074 3.926 5 N -0.280 5.280 6 C 0.332 3.668 7 O -0.388 6.388 8 C -0.043 4.043 9 F -0.150 7.150 10 C -0.182 4.182 11 C -0.159 4.159 12 N -0.151 5.151 13 C 0.118 3.882 14 C -0.593 4.593 15 H 0.043 0.957 16 C -0.174 4.174 17 N -0.569 5.569 18 Si 0.767 3.233 19 H -0.173 1.173 20 H -0.200 1.200 21 H -0.171 1.171 22 N -0.148 5.148 23 H 0.112 0.888 24 H 0.091 0.909 25 H 0.114 0.886 26 H 0.190 0.810 27 H 0.259 0.741 28 H 0.135 0.865 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.144 0.856 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.597 14.155 -7.727 16.206 hybrid contribution 1.296 -0.427 0.013 1.365 sum -0.301 13.728 -7.715 15.750 Atomic orbital electron populations 1.20260 0.83529 1.04038 1.04149 1.22942 0.98903 0.89867 0.98578 1.21517 0.88729 1.01127 1.21779 1.18300 0.89309 0.82870 1.02148 1.42832 1.08011 1.05927 1.71274 1.20011 0.90477 0.80739 0.75553 1.90638 1.26043 1.73735 1.48342 1.21056 0.83605 0.94486 1.05195 1.92883 1.53605 1.89154 1.79378 1.23931 1.06156 0.96862 0.91218 1.23874 1.06137 0.86981 0.98923 1.48842 1.06268 1.02584 1.57374 1.19757 0.80465 0.90722 0.97303 1.21201 1.14179 1.33078 0.90879 0.95705 1.25798 0.97467 0.95092 0.99057 1.70020 1.27688 1.37520 1.21699 0.85741 0.79537 0.79019 0.78989 1.17270 1.20031 1.17052 1.77325 0.86024 1.23529 1.27950 0.88785 0.90891 0.88648 0.80957 0.74121 0.86468 0.84098 0.83836 0.85565 0.92746 0.92095 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.65 10.44 71.24 0.74 -0.91 16 2 C 0.06 2.45 7.21 43.07 0.31 2.76 16 3 C -0.30 -12.01 9.58 22.14 0.21 -11.80 16 4 C 0.30 12.60 7.66 131.32 1.01 13.60 16 5 N -0.63 -23.01 5.40 -308.57 -1.67 -24.68 16 6 C 0.55 17.20 7.52 87.66 0.66 17.86 16 7 O -0.51 -17.50 13.39 -3.07 -0.04 -17.55 16 8 C -0.02 -0.51 3.67 -11.54 -0.04 -0.55 16 9 F -0.17 -4.36 17.32 44.97 0.78 -3.58 16 10 C -0.14 -2.45 10.22 30.59 0.31 -2.14 16 11 C -0.12 -1.90 10.03 30.60 0.31 -1.60 16 12 N -0.37 -17.29 3.60 -348.70 -1.26 -18.55 16 13 C 0.24 11.41 5.07 85.63 0.43 11.84 16 14 C -0.56 -31.74 9.94 25.60 0.25 -31.48 16 15 H 0.02 1.65 8.06 -2.91 -0.02 1.63 16 16 C 0.03 1.48 5.47 84.65 0.46 1.94 16 17 N -0.93 -55.96 13.96 21.45 0.30 -55.66 16 18 Si 0.95 40.40 27.47 68.60 1.88 42.29 16 19 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.25 -9.86 6.54 99.48 0.65 -9.21 16 22 N -0.32 -15.08 12.56 -47.45 -0.60 -15.68 16 23 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 24 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.17 6.48 5.83 -2.91 -0.02 6.47 16 27 H 0.42 14.64 7.79 -92.71 -0.72 13.91 16 28 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.13 1.99 7.67 -2.39 -0.02 1.97 16 32 H 0.05 2.61 7.20 -2.39 -0.02 2.59 16 33 H 0.06 2.59 6.93 -2.39 -0.02 2.57 16 34 H 0.28 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -72.54 301.91 4.43 -68.12 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.36 Total: 25.76 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: 4.66 Total: -0.46 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -3.22 Total: -114.57 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.04 Total: -17.55 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 1.88 Total: 42.29 kcal Total: -72.54 4.43 -68.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843536936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.796 kcal (2) G-P(sol) polarization free energy of solvation -72.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds