Wall clock time and date at job start Mon Mar 30 2020 04:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 119.99748 * 2 1 4 4 H 1.48502 * 109.47190 * 270.00045 * 3 2 1 5 5 H 1.48507 * 109.47220 * 30.00020 * 3 2 1 6 6 H 1.48499 * 109.46947 * 150.00199 * 3 2 1 7 7 C 1.37874 * 119.99865 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99615 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00319 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47007 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46943 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47028 * 180.02562 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99904 * 179.97438 * 12 11 10 15 15 N 1.40098 * 120.00078 * 179.97438 * 14 12 11 16 16 C 1.39178 * 120.00046 * 179.97438 * 15 14 12 17 17 C 1.39568 * 120.85325 * 359.97438 * 16 15 14 18 18 C 1.37794 * 119.12967 * 180.02562 * 17 16 15 19 19 N 1.32056 * 120.87803 * 359.97438 * 18 17 16 20 20 C 1.32160 * 121.87145 * 359.70311 * 19 18 17 21 21 F 1.35100 * 119.61060 * 180.31437 * 20 19 18 22 22 C 1.38242 * 120.77641 * 0.59035 * 20 19 18 23 23 H 0.96999 * 119.99913 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46381 * 60.00601 * 9 7 2 25 25 H 1.08999 * 109.46960 * 300.00537 * 9 7 2 26 26 H 1.08997 * 109.47562 * 60.00224 * 10 9 7 27 27 H 1.08999 * 109.47533 * 299.99983 * 10 9 7 28 28 H 1.08991 * 109.47474 * 60.00159 * 11 10 9 29 29 H 1.08998 * 109.46974 * 299.99733 * 11 10 9 30 30 H 0.96997 * 120.00495 * 359.97438 * 14 12 11 31 31 H 0.97007 * 120.00045 * 0.02562 * 15 14 12 32 32 H 1.08000 * 120.43292 * 359.97438 * 17 16 15 33 33 H 1.08001 * 119.56475 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.48021 * 179.70596 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9870 -0.0012 12 6 2.4597 -6.1325 -0.0005 13 8 3.6521 -5.9109 0.0008 14 7 2.0105 -7.4032 -0.0004 15 7 2.9209 -8.4680 -0.0004 16 6 2.4570 -9.7802 0.0003 17 6 1.0888 -10.0556 0.0014 18 6 0.6687 -11.3680 0.0026 19 7 1.5416 -12.3590 0.0021 20 6 2.8451 -12.1408 -0.0053 21 9 3.6973 -13.1890 -0.0119 22 6 3.3467 -10.8526 -0.0007 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6247 -2.5571 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8720 -3.6043 -0.8905 28 1 0.8541 -5.0446 -0.8913 29 1 0.8535 -5.0450 0.8886 30 1 1.0569 -7.5805 -0.0004 31 1 3.8746 -8.2907 -0.0001 32 1 0.3687 -9.2507 0.0022 33 1 -0.3884 -11.5892 0.0039 34 1 4.4128 -10.6798 -0.0020 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847696022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:36 Heat of formation + Delta-G solvation = -20.288658 kcal Electronic energy + Delta-G solvation = -18595.955742 eV Core-core repulsion = 15251.371631 eV Total energy + Delta-G solvation = -3344.584110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.28507 -40.69460 -39.66589 -36.73350 -34.35644 -33.23095 -32.12958 -31.18212 -29.79039 -27.67951 -24.40361 -24.07767 -22.92192 -21.32233 -20.15971 -19.03013 -18.20507 -17.14735 -16.68472 -16.36242 -16.34288 -16.08512 -15.76286 -15.45894 -14.49368 -14.34791 -14.20498 -14.03669 -13.74783 -13.47422 -12.45001 -12.44529 -12.38128 -11.96441 -11.52905 -10.88375 -10.76718 -10.61258 -10.26495 -10.13304 -10.04773 -9.80112 -9.44238 -9.44144 -9.14357 -8.39267 -7.99340 -6.04952 -4.06806 0.59959 0.93637 1.51088 2.52881 3.30148 3.30566 3.31644 3.36421 3.40662 3.75708 4.21430 4.40579 4.43853 4.60688 4.69842 4.99916 5.28695 5.31445 5.35283 5.44781 5.46249 5.47193 5.96590 6.13841 6.40756 6.55389 6.75465 6.90727 7.03229 7.27101 7.41714 7.60703 7.71963 7.94659 8.10837 8.37626 9.00004 9.57745 11.06468 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.064009 B = 0.002560 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.332582 B =10935.542004 C =11347.120003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.127 4.127 12 C 0.515 3.485 13 O -0.532 6.532 14 N -0.535 5.535 15 N -0.522 5.522 16 C 0.283 3.717 17 C -0.267 4.267 18 C 0.182 3.818 19 N -0.558 5.558 20 C 0.354 3.646 21 F -0.112 7.112 22 C -0.273 4.273 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.423 0.577 31 H 0.439 0.561 32 H 0.138 0.862 33 H 0.169 0.831 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -21.934 -0.007 21.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.134 4.134 11 C -0.168 4.168 12 C 0.303 3.697 13 O -0.405 6.405 14 N -0.285 5.285 15 N -0.244 5.244 16 C 0.168 3.832 17 C -0.293 4.293 18 C 0.027 3.973 19 N -0.277 5.277 20 C 0.201 3.799 21 F -0.091 7.091 22 C -0.302 4.302 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.265 0.735 31 H 0.283 0.717 32 H 0.156 0.844 33 H 0.186 0.814 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.876 -22.313 0.002 22.330 hybrid contribution 0.794 1.514 -0.011 1.710 sum 1.670 -20.799 -0.008 20.866 Atomic orbital electron populations 1.69954 1.06041 1.26672 1.50966 1.25016 0.94870 0.99304 0.95269 0.86583 0.79888 0.83341 0.78150 1.20635 1.21211 1.19835 1.21239 0.93191 0.90932 1.50494 0.92553 1.19131 0.93901 0.91303 0.97302 1.21503 0.98809 0.91021 1.02018 1.21870 0.97745 0.92607 1.04574 1.21795 0.91352 0.81548 0.75004 1.90722 1.17094 1.83868 1.48801 1.45435 1.05652 0.98920 1.78454 1.43351 1.05630 0.95939 1.79493 1.17639 0.92996 0.82740 0.89867 1.21483 0.93791 0.99347 1.14718 1.22203 0.98726 0.86453 0.89897 1.67115 1.01331 1.38120 1.21139 1.17655 0.85516 0.82067 0.94652 1.91626 1.67646 1.56829 1.92982 1.20927 1.01460 0.90330 1.17462 0.92980 0.96447 0.96447 0.92428 0.92440 0.88540 0.88547 0.73471 0.71740 0.84415 0.81405 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 8 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 9 C 0.02 0.50 4.97 -27.89 -0.14 0.37 16 10 C -0.10 -1.87 4.44 -26.73 -0.12 -1.99 16 11 C -0.13 -1.76 5.70 -27.88 -0.16 -1.92 16 12 C 0.51 6.98 7.95 -10.98 -0.09 6.89 16 13 O -0.53 -9.30 15.82 5.55 0.09 -9.21 16 14 N -0.53 -5.25 6.23 31.22 0.19 -5.06 16 15 N -0.52 -5.02 6.44 32.53 0.21 -4.81 16 16 C 0.28 2.48 6.77 -83.62 -0.57 1.91 16 17 C -0.27 -1.96 9.54 -39.25 -0.37 -2.33 16 18 C 0.18 1.40 11.17 -17.62 -0.20 1.20 16 19 N -0.56 -5.86 10.37 -13.70 -0.14 -6.00 16 20 C 0.35 3.65 8.40 -17.41 -0.15 3.51 16 21 F -0.11 -1.20 17.29 2.25 0.04 -1.16 16 22 C -0.27 -2.41 9.97 -39.17 -0.39 -2.80 16 23 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 27 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 28 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.42 2.85 6.69 -182.60 -1.22 1.63 16 31 H 0.44 4.34 8.03 -182.59 -1.47 2.87 16 32 H 0.14 0.68 6.33 -52.49 -0.33 0.35 16 33 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -33.28 305.73 -7.82 -41.10 By element: Atomic # 1 Polarization: 4.06 SS G_CDS: -5.94 Total: -1.88 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.59 Total: -8.48 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: 1.00 Total: -41.41 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.09 Total: -9.21 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.28 -7.82 -41.10 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847696022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.807 kcal (2) G-P(sol) polarization free energy of solvation -33.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds