Wall clock time and date at job start Mon Mar 30 2020 04:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00125 * 2 1 4 4 H 1.48507 * 109.47071 * 269.99732 * 3 2 1 5 5 H 1.48497 * 109.47436 * 29.99881 * 3 2 1 6 6 H 1.48507 * 109.47121 * 149.99948 * 3 2 1 7 7 C 1.37877 * 119.99372 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00694 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99411 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46779 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47297 * 179.97438 * 11 10 9 13 13 O 1.21433 * 119.99991 * 0.02562 * 12 11 10 14 14 N 1.34511 * 119.99901 * 179.97438 * 12 11 10 15 15 N 1.40106 * 120.00034 * 179.97438 * 14 12 11 16 16 C 1.31912 * 120.00208 * 174.38395 * 15 14 12 17 17 C 1.47204 * 121.17119 * 171.34360 * 16 15 14 18 18 C 1.34354 * 118.61821 * 179.97438 * 17 16 15 19 19 N 1.36515 * 121.28542 * 359.97438 * 18 17 16 20 20 H 0.96996 * 118.65554 * 180.02562 * 19 18 17 21 21 C 1.36856 * 122.69125 * 0.02562 * 19 18 17 22 22 C 1.34455 * 121.19800 * 359.71952 * 21 19 18 23 23 F 1.35101 * 120.72983 * 180.28770 * 22 21 19 24 24 H 0.97002 * 119.99283 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47243 * 60.00513 * 9 7 2 26 26 H 1.08996 * 109.47501 * 300.00105 * 9 7 2 27 27 H 1.09001 * 109.47385 * 60.00464 * 10 9 7 28 28 H 1.08996 * 109.47343 * 300.00389 * 10 9 7 29 29 H 1.09004 * 109.47110 * 60.00137 * 11 10 9 30 30 H 1.08996 * 109.47354 * 300.00391 * 11 10 9 31 31 H 0.96999 * 120.00768 * 0.02562 * 14 12 11 32 32 H 1.07999 * 120.68955 * 359.95364 * 17 16 15 33 33 H 1.07996 * 119.36182 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.40605 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0023 11 6 5.5514 -2.6368 0.0022 12 6 6.0537 -4.0576 0.0040 13 8 5.2645 -4.9805 0.0047 14 7 7.3761 -4.3034 0.0038 15 7 7.8431 -5.6243 0.0060 16 6 9.1348 -5.8675 -0.1061 17 6 9.6737 -7.2244 0.0812 18 6 10.9978 -7.4141 -0.0453 19 7 11.8371 -6.3790 -0.3415 20 1 12.7866 -6.5592 -0.4244 21 6 11.3938 -5.0975 -0.5264 22 6 10.0882 -4.7914 -0.4292 23 9 9.6602 -3.5242 -0.6192 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 3.6585 -3.1511 -0.8875 28 1 3.6577 -3.1500 0.8924 29 1 5.9148 -2.1223 0.8918 30 1 5.9148 -2.1237 -0.8881 31 1 8.0066 -3.5662 0.0028 32 1 9.0185 -8.0503 0.3157 33 1 11.4061 -8.4047 0.0900 34 1 12.1050 -4.3187 -0.7587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857319668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:56 Heat of formation + Delta-G solvation = -10.379479 kcal Electronic energy + Delta-G solvation = -18993.670855 eV Core-core repulsion = 15649.516438 eV Total energy + Delta-G solvation = -3344.154416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.43545 -40.10206 -39.16410 -36.13985 -34.18986 -32.88833 -31.99361 -31.70886 -29.51011 -27.91277 -24.06195 -23.57460 -22.60110 -20.60012 -19.81678 -19.54215 -18.26110 -17.56419 -16.75860 -16.50338 -16.26136 -15.99866 -15.32880 -14.91030 -14.36028 -14.18291 -14.11578 -13.60091 -13.57805 -13.23637 -12.69547 -12.57655 -12.26209 -11.92214 -11.49710 -10.91099 -10.72281 -10.16451 -10.05268 -9.90945 -9.75659 -9.63831 -9.51547 -9.36635 -9.06569 -8.44934 -7.31408 -5.94689 -3.92022 0.83010 1.00804 2.46147 2.71143 2.85511 3.32850 3.36583 3.43260 3.46985 3.60217 4.03788 4.31872 4.52845 4.66505 4.89977 5.09813 5.38649 5.38678 5.54411 5.64215 5.66507 5.73008 5.96862 6.15621 6.44466 6.64271 6.71195 6.76534 6.99609 7.37126 7.47381 7.53227 7.77302 7.89108 8.65617 8.72094 9.12616 9.67439 11.19094 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045030 B = 0.003139 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.656511 B = 8917.329534 C = 9499.298697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.134 4.134 12 C 0.523 3.477 13 O -0.507 6.507 14 N -0.590 5.590 15 N -0.252 5.252 16 C 0.140 3.860 17 C -0.162 4.162 18 C 0.105 3.895 19 N -0.616 5.616 20 H 0.420 0.580 21 C 0.103 3.897 22 C -0.045 4.045 23 F -0.125 7.125 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.391 0.609 32 H 0.157 0.843 33 H 0.169 0.831 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.941 -12.642 -0.609 35.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.176 4.176 12 C 0.311 3.689 13 O -0.379 6.379 14 N -0.339 5.339 15 N -0.061 5.061 16 C -0.044 4.044 17 C -0.189 4.189 18 C -0.020 4.020 19 N -0.227 5.227 20 H 0.255 0.745 21 C -0.025 4.025 22 C -0.075 4.075 23 F -0.104 7.104 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.236 0.764 32 H 0.174 0.826 33 H 0.186 0.814 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 31.057 -13.388 -0.495 33.824 hybrid contribution 1.695 2.048 -0.276 2.673 sum 32.752 -11.340 -0.771 34.668 Atomic orbital electron populations 1.69932 1.06295 1.26723 1.51504 1.25052 0.94749 0.99134 0.94758 0.86756 0.80342 0.83636 0.78396 1.20366 1.21484 1.19012 1.21175 0.89514 0.94587 1.50246 0.90863 1.19614 0.97325 0.92082 0.96169 1.21290 0.88766 0.99667 1.02799 1.21877 1.00828 0.90912 1.03954 1.21192 0.79865 0.92671 0.75165 1.90720 1.54637 1.46521 1.45992 1.47384 1.08879 1.03732 1.73943 1.75709 1.11277 1.01684 1.17457 1.22063 0.89117 0.92992 1.00192 1.21127 0.93607 0.94083 1.10086 1.21467 0.90804 0.92197 0.97541 1.40893 1.11123 1.04979 1.65707 0.74494 1.21170 0.95059 0.87770 0.98550 1.18419 0.92768 0.80170 1.16145 1.91195 1.89125 1.36332 1.93791 0.92842 0.96580 0.97020 0.91918 0.91836 0.89129 0.89141 0.76360 0.82591 0.81395 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.06 13.96 55.43 0.77 -28.29 16 2 C 0.06 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.62 9.66 -34.44 -0.33 -15.95 16 8 H 0.07 2.40 7.99 -52.49 -0.42 1.98 16 9 C -0.01 -0.36 4.04 -27.88 -0.11 -0.48 16 10 C -0.09 -1.95 4.44 -26.73 -0.12 -2.07 16 11 C -0.13 -2.39 5.70 -27.89 -0.16 -2.55 16 12 C 0.52 10.16 7.94 -11.11 -0.09 10.07 16 13 O -0.51 -11.96 16.32 5.42 0.09 -11.87 16 14 N -0.59 -9.90 6.05 31.19 0.19 -9.71 16 15 N -0.25 -4.21 11.16 34.58 0.39 -3.82 16 16 C 0.14 1.69 7.07 -80.49 -0.57 1.12 16 17 C -0.16 -1.26 10.28 -37.31 -0.38 -1.64 16 18 C 0.10 0.35 11.14 -16.84 -0.19 0.16 16 19 N -0.62 -1.42 5.28 -12.89 -0.07 -1.49 16 20 H 0.42 -0.65 8.89 -40.82 -0.36 -1.02 16 21 C 0.10 0.50 11.14 -16.65 -0.19 0.31 16 22 C -0.04 -0.43 7.38 -37.21 -0.27 -0.71 16 23 F -0.13 -1.37 14.03 2.25 0.03 -1.34 16 24 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 25 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.06 1.47 8.10 -51.93 -0.42 1.05 16 28 H 0.06 1.49 8.10 -51.93 -0.42 1.07 16 29 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 30 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 31 H 0.39 5.56 5.32 -182.59 -0.97 4.58 16 32 H 0.16 1.11 8.06 -52.49 -0.42 0.68 16 33 H 0.17 -0.12 8.06 -52.49 -0.42 -0.55 16 34 H 0.17 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 301.22 15.07 4.54 4.54 Total: -1.00 -40.64 301.22 -5.88 -46.52 By element: Atomic # 1 Polarization: 2.30 SS G_CDS: -4.64 Total: -2.34 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.51 Total: -9.89 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 1.28 Total: -43.31 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.03 Total: -1.34 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -40.64 -5.88 -46.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857319668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.144 kcal (2) G-P(sol) polarization free energy of solvation -40.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds