Wall clock time and date at job start Mon Mar 30 2020 04:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 120.00125 * 2 1 4 4 H 1.48507 * 109.47071 * 269.99732 * 3 2 1 5 5 H 1.48497 * 109.47436 * 29.99881 * 3 2 1 6 6 H 1.48507 * 109.47121 * 149.99948 * 3 2 1 7 7 C 1.37877 * 119.99372 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00694 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99411 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46779 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47086 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47297 * 179.97438 * 11 10 9 13 13 O 1.21433 * 119.99991 * 0.02562 * 12 11 10 14 14 N 1.34511 * 119.99901 * 179.97438 * 12 11 10 15 15 N 1.40106 * 120.00034 * 179.97438 * 14 12 11 16 16 C 1.31912 * 120.00208 * 174.38395 * 15 14 12 17 17 C 1.47204 * 121.17119 * 171.34360 * 16 15 14 18 18 C 1.34354 * 118.61821 * 179.97438 * 17 16 15 19 19 N 1.36515 * 121.28542 * 359.97438 * 18 17 16 20 20 H 0.96996 * 118.65554 * 180.02562 * 19 18 17 21 21 C 1.36856 * 122.69125 * 0.02562 * 19 18 17 22 22 C 1.34455 * 121.19800 * 359.71952 * 21 19 18 23 23 F 1.35101 * 120.72983 * 180.28770 * 22 21 19 24 24 H 0.97002 * 119.99283 * 0.02562 * 1 2 3 25 25 H 1.08999 * 109.47243 * 60.00513 * 9 7 2 26 26 H 1.08996 * 109.47501 * 300.00105 * 9 7 2 27 27 H 1.09001 * 109.47385 * 60.00464 * 10 9 7 28 28 H 1.08996 * 109.47343 * 300.00389 * 10 9 7 29 29 H 1.09004 * 109.47110 * 60.00137 * 11 10 9 30 30 H 1.08996 * 109.47354 * 300.00391 * 11 10 9 31 31 H 0.96999 * 120.00768 * 0.02562 * 14 12 11 32 32 H 1.07999 * 120.68955 * 359.95364 * 17 16 15 33 33 H 1.07996 * 119.36182 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.40605 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 6 4.0214 -2.6367 0.0023 11 6 5.5514 -2.6368 0.0022 12 6 6.0537 -4.0576 0.0040 13 8 5.2645 -4.9805 0.0047 14 7 7.3761 -4.3034 0.0038 15 7 7.8431 -5.6243 0.0060 16 6 9.1348 -5.8675 -0.1061 17 6 9.6737 -7.2244 0.0812 18 6 10.9978 -7.4141 -0.0453 19 7 11.8371 -6.3790 -0.3415 20 1 12.7866 -6.5592 -0.4244 21 6 11.3938 -5.0975 -0.5264 22 6 10.0882 -4.7914 -0.4292 23 9 9.6602 -3.5242 -0.6192 24 1 -0.4849 0.8401 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6805 -0.8888 27 1 3.6585 -3.1511 -0.8875 28 1 3.6577 -3.1500 0.8924 29 1 5.9148 -2.1223 0.8918 30 1 5.9148 -2.1237 -0.8881 31 1 8.0066 -3.5662 0.0028 32 1 9.0185 -8.0503 0.3157 33 1 11.4061 -8.4047 0.0900 34 1 12.1050 -4.3187 -0.7587 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000857319668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:55 Heat of formation + Delta-G solvation = -42.996781 kcal Electronic energy + Delta-G solvation = -18995.085247 eV Core-core repulsion = 15649.516438 eV Total energy + Delta-G solvation = -3345.568808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.09549 -40.75145 -40.43990 -37.16373 -36.11706 -34.21735 -33.73358 -32.27833 -30.75597 -29.39880 -25.75190 -24.15476 -23.60825 -22.18583 -21.42760 -20.04510 -19.25942 -18.75788 -18.39024 -17.34214 -17.24238 -16.91404 -16.72407 -16.27930 -15.51985 -15.24134 -15.13587 -14.77143 -14.71928 -14.65050 -13.92080 -13.77676 -13.52851 -13.24935 -13.05980 -12.74072 -12.51473 -11.81386 -11.75137 -11.53284 -11.35153 -11.00062 -10.91723 -10.75202 -10.61492 -10.41527 -8.27873 -8.12235 -6.33705 0.20562 0.40451 1.38107 1.42134 1.54597 1.66144 1.72777 2.07699 2.39395 2.47675 2.97938 3.06789 3.57998 3.71826 3.96759 4.10698 4.17711 4.22482 4.27763 4.66778 4.84969 4.86337 4.89212 4.99067 5.01223 5.20265 5.27336 5.51568 5.56905 5.66364 5.90749 6.23324 6.31170 6.43236 6.69154 6.74262 7.30221 7.57986 8.89992 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.045030 B = 0.003139 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.656511 B = 8917.329534 C = 9499.298697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.964 3.036 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.237 1.237 7 C -0.541 4.541 8 H 0.019 0.981 9 C -0.007 4.007 10 C -0.079 4.079 11 C -0.121 4.121 12 C 0.518 3.482 13 O -0.573 6.573 14 N -0.580 5.580 15 N -0.359 5.359 16 C 0.157 3.843 17 C -0.217 4.217 18 C 0.160 3.840 19 N -0.586 5.586 20 H 0.449 0.551 21 C 0.158 3.842 22 C -0.112 4.112 23 F -0.139 7.139 24 H 0.267 0.733 25 H 0.033 0.967 26 H 0.031 0.969 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.398 0.602 32 H 0.151 0.849 33 H 0.227 0.773 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.671 -11.936 -0.869 41.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.199 4.199 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.160 1.160 7 C -0.579 4.579 8 H 0.037 0.963 9 C -0.045 4.045 10 C -0.117 4.117 11 C -0.162 4.162 12 C 0.307 3.693 13 O -0.450 6.450 14 N -0.328 5.328 15 N -0.171 5.171 16 C -0.021 4.021 17 C -0.244 4.244 18 C 0.032 3.968 19 N -0.196 5.196 20 H 0.290 0.710 21 C 0.026 3.974 22 C -0.143 4.143 23 F -0.119 7.119 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.138 0.862 30 H 0.137 0.863 31 H 0.245 0.755 32 H 0.169 0.831 33 H 0.243 0.757 34 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 37.940 -12.716 -0.760 40.022 hybrid contribution 0.069 1.527 -0.228 1.545 sum 38.009 -11.190 -0.989 39.634 Atomic orbital electron populations 1.70113 1.08670 1.28327 1.52625 1.26208 0.95794 1.04149 0.93759 0.85467 0.79618 0.76916 0.79449 1.18805 1.20957 1.15978 1.21535 0.92543 0.92966 1.50884 0.96266 1.19538 0.93651 0.93776 0.97518 1.21050 0.92511 0.97673 1.00500 1.21710 0.96956 0.90873 1.06657 1.21332 0.80639 0.92554 0.74807 1.90671 1.56255 1.48162 1.49920 1.46970 1.07843 1.05026 1.72977 1.75808 1.13925 1.00623 1.26749 1.22962 0.88782 0.95496 0.94828 1.21326 0.95792 0.92555 1.14754 1.22243 0.89066 0.94184 0.91283 1.41338 1.12840 1.04093 1.61318 0.70982 1.21797 0.93885 0.89270 0.92407 1.18594 0.94208 0.79704 1.21767 1.91131 1.89461 1.36909 1.94392 0.92432 0.94885 0.95050 0.94418 0.94317 0.86247 0.86309 0.75483 0.83104 0.75704 0.76981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.72 13.96 21.45 0.30 -63.42 16 2 C 0.00 -0.20 5.47 84.65 0.46 0.26 16 3 Si 0.96 45.72 27.47 68.60 1.88 47.60 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 6 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 7 C -0.54 -34.23 9.66 25.60 0.25 -33.98 16 8 H 0.02 1.36 7.99 -2.91 -0.02 1.33 16 9 C -0.01 -0.38 4.04 29.85 0.12 -0.26 16 10 C -0.08 -3.73 4.44 30.60 0.14 -3.59 16 11 C -0.12 -4.37 5.70 29.85 0.17 -4.20 16 12 C 0.52 21.61 7.94 87.70 0.70 22.30 16 13 O -0.57 -29.79 16.32 -3.50 -0.06 -29.84 16 14 N -0.58 -20.82 6.05 -173.71 -1.05 -21.87 16 15 N -0.36 -12.99 11.16 -44.52 -0.50 -13.49 16 16 C 0.16 3.85 7.07 43.89 0.31 4.16 16 17 C -0.22 -3.02 10.28 23.74 0.24 -2.77 16 18 C 0.16 0.15 11.14 83.08 0.93 1.08 16 19 N -0.59 1.41 5.28 -194.69 -1.03 0.38 16 20 H 0.45 -5.29 8.89 -92.71 -0.82 -6.11 16 21 C 0.16 0.65 11.14 83.04 0.92 1.58 16 22 C -0.11 -1.96 7.38 23.80 0.18 -1.78 16 23 F -0.14 -2.95 14.03 44.97 0.63 -2.32 16 24 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 25 H 0.03 1.56 7.20 -2.39 -0.02 1.54 16 26 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 27 H 0.04 1.91 8.10 -2.39 -0.02 1.89 16 28 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 29 H 0.12 3.59 8.14 -2.38 -0.02 3.58 16 30 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.40 11.82 5.32 -213.32 -1.14 10.68 16 32 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 33 H 0.23 -2.15 8.06 -2.91 -0.02 -2.18 16 34 H 0.21 -0.91 8.06 -2.91 -0.02 -0.94 16 Total: -1.00 -102.38 301.22 3.72 -98.66 By element: Atomic # 1 Polarization: 2.37 SS G_CDS: -0.87 Total: 1.50 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 4.41 Total: -17.20 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -2.28 Total: -98.40 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.06 Total: -29.84 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.63 Total: -2.32 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 1.88 Total: 47.60 kcal Total: -102.38 3.72 -98.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857319668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.660 kcal (2) G-P(sol) polarization free energy of solvation -102.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds