Wall clock time and date at job start Mon Mar 30 2020 05:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47442 * 2 1 4 4 C 1.33133 * 120.00325 * 121.36755 * 3 2 1 5 5 F 1.35097 * 120.00460 * 185.34121 * 4 3 2 6 6 C 1.47269 * 119.99827 * 5.34302 * 4 3 2 7 7 O 1.21618 * 119.99870 * 93.36326 * 6 4 3 8 8 N 1.34778 * 119.99822 * 273.36655 * 6 4 3 9 9 C 1.40067 * 119.99582 * 179.97438 * 8 6 4 10 10 C 1.40425 * 125.97659 * 0.02562 * 9 8 6 11 11 C 1.35235 * 107.86645 * 179.73254 * 10 9 8 12 12 N 1.34969 * 107.86582 * 0.38744 * 11 10 9 13 13 C 1.46504 * 125.97477 * 179.86728 * 12 11 10 14 14 C 1.50706 * 109.46389 * 124.71584 * 13 12 11 15 15 H 1.07992 * 120.00434 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99607 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00096 * 359.72765 * 16 14 13 18 18 Si 1.86800 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47329 * 269.72732 * 18 16 14 20 20 H 1.48503 * 109.46849 * 29.73059 * 18 16 14 21 21 H 1.48501 * 109.47123 * 149.72304 * 18 16 14 22 22 N 1.31235 * 125.97301 * 179.97438 * 9 8 6 23 23 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47073 * 300.00411 * 1 2 3 25 25 H 1.09001 * 109.46976 * 59.99624 * 1 2 3 26 26 H 1.08997 * 109.47073 * 239.99589 * 2 1 3 27 27 H 1.09001 * 109.46976 * 120.00376 * 2 1 3 28 28 H 1.08003 * 120.00028 * 301.37417 * 3 2 1 29 29 H 0.96992 * 120.00238 * 359.97438 * 8 6 4 30 30 H 1.07998 * 126.06850 * 359.97147 * 10 9 8 31 31 H 1.08000 * 126.06839 * 180.23547 * 11 10 9 32 32 H 1.08999 * 109.47203 * 4.72415 * 13 12 11 33 33 H 1.08993 * 109.47294 * 244.71329 * 13 12 11 34 34 H 0.97002 * 119.99462 * 0.27752 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.8202 1.8483 0.9844 5 9 3.1827 3.1484 1.0433 6 6 3.2965 0.9040 2.0092 7 8 4.3708 0.3503 1.8736 8 7 2.5417 0.6533 3.0974 9 6 2.9945 -0.2452 4.0718 10 6 4.2083 -0.9509 4.0429 11 6 4.2761 -1.7056 5.1630 12 7 3.1472 -1.4962 5.8725 13 6 2.8084 -2.1193 7.1544 14 6 2.5104 -1.0471 8.1706 15 1 2.5673 -0.0059 7.8897 16 6 2.1640 -1.3956 9.4590 17 7 2.0886 -2.6637 9.7995 18 14 1.7954 -0.0667 10.7189 19 1 3.0466 0.3050 11.4269 20 1 1.2421 1.1276 10.0313 21 1 0.8040 -0.5763 11.7002 22 7 2.3590 -0.5741 5.1719 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.7534 2.0922 -0.7986 29 1 1.6851 1.0952 3.2057 30 1 4.9566 -0.8971 3.2661 31 1 5.0883 -2.3617 5.4394 32 1 3.6484 -2.7225 7.4985 33 1 1.9318 -2.7548 7.0290 34 1 2.2805 -3.3537 9.1452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865942882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:09 Heat of formation + Delta-G solvation = 10.764218 kcal Electronic energy + Delta-G solvation = -19527.218785 eV Core-core repulsion = 16183.981229 eV Total energy + Delta-G solvation = -3343.237557 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.14746 -40.92098 -39.52730 -35.67110 -35.02642 -33.71816 -31.20193 -30.29965 -29.48990 -26.53723 -24.77512 -23.28703 -22.66652 -21.12181 -20.24400 -19.33827 -17.79298 -17.24559 -16.89833 -16.81913 -15.99483 -15.24946 -15.07710 -14.67071 -14.50466 -13.99124 -13.81530 -13.70805 -13.43235 -12.97779 -12.62454 -12.53461 -12.32900 -11.89043 -11.70842 -11.38533 -11.20734 -10.85972 -10.60696 -10.26470 -10.19763 -9.89033 -9.39530 -9.06042 -8.61425 -8.32667 -7.65359 -6.62008 -4.36356 1.16663 1.88487 2.45988 2.72705 3.35117 3.38954 3.47725 3.52904 3.57458 4.06420 4.28015 4.38206 4.61813 4.94037 5.06182 5.11525 5.14695 5.33541 5.48411 5.59244 5.66459 5.70037 5.88320 5.98693 6.09021 6.28177 6.35536 6.50159 6.68304 7.14272 7.30463 7.61532 7.74630 7.88080 8.29928 8.42980 8.57048 9.31897 10.75821 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.003997 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.689360 B = 7004.435633 C = 7095.892319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.136 4.136 4 C 0.016 3.984 5 F -0.125 7.125 6 C 0.556 3.444 7 O -0.492 6.492 8 N -0.615 5.615 9 C 0.253 3.747 10 C -0.285 4.285 11 C 0.053 3.947 12 N -0.314 5.314 13 C 0.248 3.752 14 C -0.609 4.609 15 H 0.064 0.936 16 C 0.024 3.976 17 N -0.905 5.905 18 Si 1.079 2.921 19 H -0.285 1.285 20 H -0.286 1.286 21 H -0.281 1.281 22 N -0.295 5.295 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.142 0.858 29 H 0.415 0.585 30 H 0.161 0.839 31 H 0.170 0.830 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 5.440 -18.365 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 C -0.156 4.156 4 C -0.006 4.006 5 F -0.103 7.103 6 C 0.338 3.662 7 O -0.364 6.364 8 N -0.263 5.263 9 C 0.000 4.000 10 C -0.316 4.316 11 C -0.096 4.096 12 N -0.096 5.096 13 C 0.130 3.870 14 C -0.648 4.648 15 H 0.082 0.918 16 C -0.181 4.181 17 N -0.540 5.540 18 Si 0.906 3.094 19 H -0.212 1.212 20 H -0.212 1.212 21 H -0.207 1.207 22 N -0.126 5.126 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.092 0.908 28 H 0.159 0.841 29 H 0.252 0.748 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.985 5.440 -16.058 17.070 hybrid contribution 0.883 0.152 -2.007 2.198 sum -1.102 5.592 -18.065 18.943 Atomic orbital electron populations 1.21701 0.93641 1.02609 1.02397 1.20661 0.97071 0.92074 1.03949 1.23725 0.95082 0.99657 0.97170 1.19303 1.02467 0.79550 0.99300 1.91559 1.90718 1.31960 1.96088 1.18221 0.84496 0.82524 0.80915 1.90812 1.20568 1.49515 1.75537 1.42443 1.22979 1.42377 1.18480 1.19052 0.94854 0.95389 0.90680 1.21530 1.00544 1.06596 1.02919 1.22579 0.92455 1.01604 0.93003 1.48843 1.12451 1.30473 1.17793 1.19805 0.97114 0.94008 0.76052 1.22129 1.52439 0.93866 0.96318 0.91763 1.25927 0.93452 1.00596 0.98115 1.70831 1.45168 0.99797 1.38197 0.83386 0.77031 0.73975 0.75006 1.21174 1.21218 1.20678 1.77384 1.19121 1.10975 1.05078 0.91736 0.92165 0.92190 0.89502 0.90803 0.84064 0.74841 0.82127 0.81280 0.93500 0.94636 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.90 37.16 0.37 -0.66 16 2 C -0.10 -0.85 6.21 -27.88 -0.17 -1.02 16 3 C -0.14 -1.19 9.55 -36.09 -0.34 -1.53 16 4 C 0.02 0.19 7.19 -37.69 -0.27 -0.08 16 5 F -0.12 -1.54 17.27 2.25 0.04 -1.50 16 6 C 0.56 8.18 5.53 -12.59 -0.07 8.11 16 7 O -0.49 -8.66 14.23 5.26 0.07 -8.58 16 8 N -0.62 -9.42 5.30 -12.16 -0.06 -9.49 16 9 C 0.25 4.96 8.10 -154.46 -1.25 3.71 16 10 C -0.28 -5.49 9.60 -39.83 -0.38 -5.88 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 N -0.31 -7.16 3.67 -62.56 -0.23 -7.39 16 13 C 0.25 6.16 5.57 -5.19 -0.03 6.13 16 14 C -0.61 -16.93 9.24 -34.44 -0.32 -17.25 16 15 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 16 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 17 N -0.90 -26.04 13.65 55.43 0.76 -25.29 16 18 Si 1.08 24.76 29.90 -169.99 -5.08 19.67 16 19 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.40 7.11 56.52 0.40 -5.99 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 N -0.29 -6.66 12.42 31.43 0.39 -6.27 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.80 6.20 -51.93 -0.32 0.48 16 28 H 0.14 0.89 8.06 -52.48 -0.42 0.47 16 29 H 0.42 5.27 8.81 -40.82 -0.36 4.91 16 30 H 0.16 2.99 5.91 -52.49 -0.31 2.68 16 31 H 0.17 2.65 8.06 -52.49 -0.42 2.23 16 32 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 33 H 0.04 0.91 8.00 -51.93 -0.42 0.50 16 34 H 0.27 7.51 7.22 -40.82 -0.29 7.21 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -32.21 306.13 -6.13 -38.34 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -3.86 Total: 2.97 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: -2.77 Total: -7.08 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.85 Total: -48.44 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.07 Total: -8.58 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 24.76 SS G_CDS: -5.08 Total: 19.67 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.21 -6.13 -38.34 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865942882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.105 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds