Wall clock time and date at job start Mon Mar 30 2020 05:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.50694 * 109.47442 * 2 1 4 4 C 1.33133 * 120.00325 * 121.36755 * 3 2 1 5 5 F 1.35097 * 120.00460 * 185.34121 * 4 3 2 6 6 C 1.47269 * 119.99827 * 5.34302 * 4 3 2 7 7 O 1.21618 * 119.99870 * 93.36326 * 6 4 3 8 8 N 1.34778 * 119.99822 * 273.36655 * 6 4 3 9 9 C 1.40067 * 119.99582 * 179.97438 * 8 6 4 10 10 C 1.40425 * 125.97659 * 0.02562 * 9 8 6 11 11 C 1.35235 * 107.86645 * 179.73254 * 10 9 8 12 12 N 1.34969 * 107.86582 * 0.38744 * 11 10 9 13 13 C 1.46504 * 125.97477 * 179.86728 * 12 11 10 14 14 C 1.50706 * 109.46389 * 124.71584 * 13 12 11 15 15 H 1.07992 * 120.00434 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99607 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00096 * 359.72765 * 16 14 13 18 18 Si 1.86800 * 120.00121 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47329 * 269.72732 * 18 16 14 20 20 H 1.48503 * 109.46849 * 29.73059 * 18 16 14 21 21 H 1.48501 * 109.47123 * 149.72304 * 18 16 14 22 22 N 1.31235 * 125.97301 * 179.97438 * 9 8 6 23 23 H 1.08998 * 109.47420 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47073 * 300.00411 * 1 2 3 25 25 H 1.09001 * 109.46976 * 59.99624 * 1 2 3 26 26 H 1.08997 * 109.47073 * 239.99589 * 2 1 3 27 27 H 1.09001 * 109.46976 * 120.00376 * 2 1 3 28 28 H 1.08003 * 120.00028 * 301.37417 * 3 2 1 29 29 H 0.96992 * 120.00238 * 359.97438 * 8 6 4 30 30 H 1.07998 * 126.06850 * 359.97147 * 10 9 8 31 31 H 1.08000 * 126.06839 * 180.23547 * 11 10 9 32 32 H 1.08999 * 109.47203 * 4.72415 * 13 12 11 33 33 H 1.08993 * 109.47294 * 244.71329 * 13 12 11 34 34 H 0.97002 * 119.99462 * 0.27752 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.8202 1.8483 0.9844 5 9 3.1827 3.1484 1.0433 6 6 3.2965 0.9040 2.0092 7 8 4.3708 0.3503 1.8736 8 7 2.5417 0.6533 3.0974 9 6 2.9945 -0.2452 4.0718 10 6 4.2083 -0.9509 4.0429 11 6 4.2761 -1.7056 5.1630 12 7 3.1472 -1.4962 5.8725 13 6 2.8084 -2.1193 7.1544 14 6 2.5104 -1.0471 8.1706 15 1 2.5673 -0.0059 7.8897 16 6 2.1640 -1.3956 9.4590 17 7 2.0886 -2.6637 9.7995 18 14 1.7954 -0.0667 10.7189 19 1 3.0466 0.3050 11.4269 20 1 1.2421 1.1276 10.0313 21 1 0.8040 -0.5763 11.7002 22 7 2.3590 -0.5741 5.1719 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8934 -0.5139 0.8900 28 1 1.7534 2.0922 -0.7986 29 1 1.6851 1.0952 3.2057 30 1 4.9566 -0.8971 3.2661 31 1 5.0883 -2.3617 5.4394 32 1 3.6484 -2.7225 7.4985 33 1 1.9318 -2.7548 7.0290 34 1 2.2805 -3.3537 9.1452 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865942882.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:08 Heat of formation + Delta-G solvation = -9.418908 kcal Electronic energy + Delta-G solvation = -19528.093991 eV Core-core repulsion = 16183.981229 eV Total energy + Delta-G solvation = -3344.112763 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.02674 -42.42193 -40.85980 -36.56270 -36.47892 -35.57029 -32.83246 -31.25501 -31.06088 -28.32774 -26.01239 -24.83077 -23.78693 -22.55294 -21.71059 -20.51026 -19.26615 -18.84246 -18.29547 -17.81909 -17.29437 -16.55648 -16.26813 -16.14144 -15.68371 -15.48583 -15.23719 -15.03477 -14.44034 -14.21212 -14.02993 -13.93825 -13.68502 -13.30522 -13.23185 -12.62130 -12.33126 -12.17369 -12.02092 -11.98433 -11.75937 -11.25202 -11.03750 -10.69779 -10.22253 -9.92906 -9.31451 -8.79527 -6.57105 0.34285 0.58918 1.09390 1.24978 1.50640 1.57837 1.77829 1.98227 2.08857 2.47539 3.00271 3.02891 3.38301 3.80507 3.94067 4.07865 4.31475 4.39613 4.46577 4.50398 4.60439 4.74396 4.75519 4.79280 4.93822 5.04306 5.07810 5.26306 5.38674 5.52588 5.69554 5.87838 5.96890 6.23675 6.39582 6.63370 6.86932 7.18234 8.57769 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.026072 B = 0.003997 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.689360 B = 7004.435633 C = 7095.892319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.105 4.105 3 C -0.091 4.091 4 C -0.016 4.016 5 F -0.130 7.130 6 C 0.561 3.439 7 O -0.523 6.523 8 N -0.609 5.609 9 C 0.262 3.738 10 C -0.291 4.291 11 C 0.060 3.940 12 N -0.339 5.339 13 C 0.258 3.742 14 C -0.623 4.623 15 H 0.044 0.956 16 C -0.017 4.017 17 N -0.923 5.923 18 Si 1.121 2.879 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.275 1.275 22 N -0.338 5.338 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.178 0.822 29 H 0.427 0.573 30 H 0.170 0.830 31 H 0.205 0.795 32 H 0.056 0.944 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 6.373 -19.899 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C -0.110 4.110 4 C -0.038 4.038 5 F -0.109 7.109 6 C 0.346 3.654 7 O -0.397 6.397 8 N -0.258 5.258 9 C 0.008 3.992 10 C -0.322 4.322 11 C -0.089 4.089 12 N -0.121 5.121 13 C 0.139 3.861 14 C -0.661 4.661 15 H 0.063 0.937 16 C -0.217 4.217 17 N -0.559 5.559 18 Si 0.942 3.058 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.200 1.200 22 N -0.168 5.168 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.123 0.877 27 H 0.065 0.935 28 H 0.195 0.805 29 H 0.265 0.735 30 H 0.187 0.813 31 H 0.222 0.778 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.258 6.379 -17.628 18.882 hybrid contribution 0.958 -0.164 -1.729 1.983 sum -1.300 6.214 -19.357 20.372 Atomic orbital electron populations 1.21700 0.92231 1.02964 1.03253 1.20769 0.98200 0.91803 1.03494 1.24121 0.91257 0.99821 0.95819 1.18949 1.05826 0.79173 0.99835 1.91546 1.91203 1.31990 1.96186 1.18790 0.83705 0.82231 0.80688 1.90774 1.21933 1.50799 1.76209 1.42587 1.23686 1.41654 1.17898 1.19380 0.94558 0.94912 0.90338 1.21734 1.00696 1.06633 1.03129 1.23206 0.92071 1.01298 0.92279 1.48624 1.13830 1.31785 1.17876 1.19470 0.96721 0.93215 0.76683 1.22306 1.52724 0.93614 0.97447 0.93742 1.27232 0.92645 1.01722 1.00051 1.70921 1.46440 1.00306 1.38237 0.82855 0.77727 0.71902 0.73305 1.19414 1.20617 1.19997 1.77301 1.20519 1.12462 1.06548 0.91761 0.92664 0.89982 0.87714 0.93486 0.80516 0.73495 0.81282 0.77820 0.92597 0.96264 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.90 71.98 0.71 -0.94 16 2 C -0.11 -1.52 6.21 29.85 0.19 -1.34 16 3 C -0.09 -1.29 9.55 24.54 0.23 -1.06 16 4 C -0.02 -0.34 7.19 23.50 0.17 -0.17 16 5 F -0.13 -3.03 17.27 44.97 0.78 -2.25 16 6 C 0.56 16.17 5.53 86.62 0.48 16.65 16 7 O -0.52 -18.23 14.23 -4.09 -0.06 -18.28 16 8 N -0.61 -18.55 5.30 -310.63 -1.65 -20.20 16 9 C 0.26 10.33 8.10 133.36 1.08 11.41 16 10 C -0.29 -11.14 9.60 22.11 0.21 -10.93 16 11 C 0.06 2.30 11.43 83.52 0.96 3.25 16 12 N -0.34 -15.68 3.67 -351.84 -1.29 -16.97 16 13 C 0.26 13.08 5.57 85.63 0.48 13.55 16 14 C -0.62 -35.17 9.24 25.60 0.24 -34.94 16 15 H 0.04 2.64 7.81 -2.91 -0.02 2.62 16 16 C -0.02 -0.92 5.46 84.65 0.46 -0.46 16 17 N -0.92 -53.41 13.65 21.45 0.29 -53.12 16 18 Si 1.12 49.52 29.90 68.60 2.05 51.57 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 N -0.34 -15.54 12.42 -54.49 -0.68 -16.21 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.05 0.96 6.20 -2.39 -0.01 0.95 16 28 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 29 H 0.43 10.74 8.81 -92.71 -0.82 9.93 16 30 H 0.17 6.21 5.91 -2.91 -0.02 6.19 16 31 H 0.21 6.07 8.06 -2.91 -0.02 6.05 16 32 H 0.06 2.70 7.94 -2.39 -0.02 2.68 16 33 H 0.02 1.03 8.00 -2.39 -0.02 1.01 16 34 H 0.26 14.94 7.22 -92.71 -0.67 14.27 16 Total: -1.00 -70.07 306.13 5.07 -65.00 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: 0.42 Total: 15.42 kcal Atomic # 6 Polarization: -10.16 SS G_CDS: 5.20 Total: -4.95 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -3.32 Total: -106.50 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.06 Total: -18.28 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.05 Total: 51.57 kcal Total: -70.07 5.07 -65.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865942882.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.584 kcal (2) G-P(sol) polarization free energy of solvation -70.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds