Wall clock time and date at job start Mon Mar 30 2020 05:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47372 * 2 1 4 4 C 1.33135 * 120.00081 * 125.00295 * 3 2 1 5 5 F 1.35102 * 119.99889 * 359.97438 * 4 3 2 6 6 C 1.47259 * 120.00146 * 180.02562 * 4 3 2 7 7 O 1.21624 * 119.99684 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00565 * 179.97438 * 6 4 3 9 9 C 1.40059 * 120.00390 * 179.97438 * 8 6 4 10 10 C 1.40431 * 125.97653 * 359.97438 * 9 8 6 11 11 C 1.35240 * 107.86381 * 179.73291 * 10 9 8 12 12 N 1.34962 * 107.86669 * 0.42698 * 11 10 9 13 13 C 1.46500 * 125.97410 * 179.83381 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71196 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31239 * 125.97803 * 179.97438 * 9 8 6 23 23 H 1.08993 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47338 * 300.00575 * 1 2 3 25 25 H 1.09004 * 109.46777 * 60.00283 * 1 2 3 26 26 H 1.09000 * 109.46897 * 239.99150 * 2 1 3 27 27 H 1.09004 * 109.46777 * 119.99717 * 2 1 3 28 28 H 1.08003 * 119.99975 * 304.99686 * 3 2 1 29 29 H 0.97006 * 119.99140 * 0.02562 * 8 6 4 30 30 H 1.07997 * 126.06524 * 0.02562 * 10 9 8 31 31 H 1.07999 * 126.05941 * 180.25841 * 11 10 9 32 32 H 1.09004 * 109.47078 * 4.71958 * 13 12 11 33 33 H 1.08993 * 109.47364 * 244.71729 * 13 12 11 34 34 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8779 1.8279 0.9444 5 9 3.2850 0.9674 1.9031 6 6 3.3684 3.2164 0.9448 7 8 3.0014 3.9911 0.0820 8 7 4.2238 3.6288 1.9011 9 6 4.6907 4.9492 1.9011 10 6 4.3519 5.9440 0.9696 11 6 5.0029 7.0772 1.3176 12 7 5.7345 6.8125 2.4204 13 6 6.5960 7.7615 3.1299 14 6 6.1870 7.8250 4.5790 15 1 5.3675 7.2187 4.9358 16 6 6.8589 8.6570 5.4492 17 7 7.8602 9.3913 5.0158 18 14 6.3524 8.7352 7.2455 19 1 5.3275 9.7948 7.4250 20 1 5.7876 7.4252 7.6580 21 1 7.5392 9.0478 8.0814 22 7 5.5214 5.4733 2.7715 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7067 2.1087 -0.7662 29 1 4.5167 3.0107 2.5890 30 1 3.6857 5.8264 0.1277 31 1 4.9491 8.0250 0.8026 32 1 6.4956 8.7495 2.6805 33 1 7.6331 7.4338 3.0591 34 1 8.1234 9.3505 4.0831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000865942884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:13 Heat of formation + Delta-G solvation = 6.463087 kcal Electronic energy + Delta-G solvation = -19170.505464 eV Core-core repulsion = 15827.081397 eV Total energy + Delta-G solvation = -3343.424068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.18184 -40.83940 -39.41835 -35.64887 -34.85212 -33.71310 -31.23565 -30.45241 -29.46816 -26.59069 -25.07723 -23.15195 -22.18042 -20.85491 -19.98830 -19.78145 -18.10665 -17.22581 -16.85869 -16.35122 -16.19135 -15.28065 -14.94217 -14.78450 -14.47532 -14.01385 -13.80591 -13.55904 -13.29485 -13.13904 -12.68519 -12.51592 -12.30212 -11.90659 -11.73001 -11.44311 -11.19131 -10.84571 -10.57858 -10.23972 -10.18686 -9.84039 -9.45657 -9.03610 -8.60057 -8.29184 -7.61274 -6.60588 -4.34815 0.80664 2.44978 2.50380 2.86926 3.35759 3.40055 3.51996 3.58173 3.60572 4.06394 4.34582 4.39440 4.60957 4.82260 4.86748 5.13151 5.17892 5.32748 5.38066 5.53616 5.62526 5.74861 5.79848 6.02344 6.06271 6.32430 6.45600 6.52307 6.70685 7.19934 7.35787 7.64226 7.77261 7.94232 8.31624 8.46374 8.58687 9.33457 10.77220 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.003499 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.074992 B = 7999.286477 C = 8496.232910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.105 4.105 3 C -0.100 4.100 4 C -0.002 4.002 5 F -0.136 7.136 6 C 0.554 3.446 7 O -0.503 6.503 8 N -0.620 5.620 9 C 0.255 3.745 10 C -0.284 4.284 11 C 0.052 3.948 12 N -0.315 5.315 13 C 0.248 3.752 14 C -0.609 4.609 15 H 0.064 0.936 16 C 0.023 3.977 17 N -0.905 5.905 18 Si 1.079 2.921 19 H -0.285 1.285 20 H -0.286 1.286 21 H -0.281 1.281 22 N -0.296 5.296 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.417 0.583 30 H 0.162 0.838 31 H 0.170 0.830 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.505 -15.726 -10.301 22.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.121 4.121 4 C -0.024 4.024 5 F -0.115 7.115 6 C 0.339 3.661 7 O -0.378 6.378 8 N -0.266 5.266 9 C 0.002 3.998 10 C -0.315 4.315 11 C -0.097 4.097 12 N -0.096 5.096 13 C 0.130 3.870 14 C -0.647 4.647 15 H 0.082 0.918 16 C -0.182 4.182 17 N -0.540 5.540 18 Si 0.906 3.094 19 H -0.212 1.212 20 H -0.212 1.212 21 H -0.207 1.207 22 N -0.127 5.127 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.097 0.903 28 H 0.172 0.828 29 H 0.253 0.747 30 H 0.179 0.821 31 H 0.187 0.813 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.590 -14.595 -8.313 19.856 hybrid contribution -0.516 -0.951 -1.625 1.952 sum -11.105 -15.546 -9.937 21.535 Atomic orbital electron populations 1.21706 0.93904 1.02300 1.02601 1.20719 0.97071 0.92507 1.03935 1.24017 0.92774 0.99104 0.96158 1.19510 1.03440 0.87526 0.91964 1.91485 1.89427 1.68471 1.62129 1.18173 0.79174 0.86948 0.81810 1.90782 1.57012 1.53296 1.36678 1.42252 1.44690 1.09709 1.29951 1.19043 0.98740 0.85340 0.96666 1.21523 1.12102 0.91477 1.06381 1.22578 0.95885 1.00131 0.91148 1.48835 1.34164 1.06882 1.19763 1.19799 0.88772 0.84816 0.93592 1.22131 1.20974 1.28958 0.92646 0.91766 1.25933 0.93599 0.92396 1.06225 1.70825 1.26086 1.38817 1.18298 0.83382 0.76058 0.76190 0.73732 1.21182 1.21209 1.20681 1.77388 1.21002 0.92637 1.21691 0.91917 0.92270 0.92073 0.89436 0.90323 0.82845 0.74731 0.82054 0.81290 0.93501 0.94652 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.49 16 2 C -0.11 -0.71 6.35 -27.88 -0.18 -0.88 16 3 C -0.10 -0.90 9.10 -36.09 -0.33 -1.22 16 4 C 0.00 -0.02 7.37 -37.69 -0.28 -0.30 16 5 F -0.14 -1.52 15.54 2.25 0.04 -1.48 16 6 C 0.55 8.16 7.74 -12.60 -0.10 8.06 16 7 O -0.50 -8.40 13.35 5.26 0.07 -8.33 16 8 N -0.62 -10.08 5.44 -12.16 -0.07 -10.15 16 9 C 0.26 5.19 8.11 -154.46 -1.25 3.94 16 10 C -0.28 -5.56 9.61 -39.82 -0.38 -5.94 16 11 C 0.05 1.04 11.43 -17.24 -0.20 0.84 16 12 N -0.31 -7.35 3.67 -62.56 -0.23 -7.58 16 13 C 0.25 6.27 5.57 -5.19 -0.03 6.24 16 14 C -0.61 -17.14 9.24 -34.44 -0.32 -17.46 16 15 H 0.06 1.89 7.81 -52.49 -0.41 1.48 16 16 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 17 N -0.90 -26.31 13.65 55.43 0.76 -25.56 16 18 Si 1.08 24.99 29.90 -169.99 -5.08 19.91 16 19 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 N -0.30 -6.93 12.42 31.43 0.39 -6.54 16 23 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.56 7.04 -51.93 -0.37 0.19 16 28 H 0.15 1.32 7.50 -52.48 -0.39 0.93 16 29 H 0.42 5.89 8.37 -40.82 -0.34 5.55 16 30 H 0.16 3.00 5.91 -52.49 -0.31 2.69 16 31 H 0.17 2.69 8.06 -52.49 -0.42 2.26 16 32 H 0.05 1.14 7.94 -51.93 -0.41 0.72 16 33 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 34 H 0.27 7.59 7.22 -40.82 -0.29 7.29 16 LS Contribution 305.58 15.07 4.61 4.61 Total: -1.00 -32.23 305.58 -6.16 -38.39 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -3.85 Total: 3.41 kcal Atomic # 6 Polarization: -3.88 SS G_CDS: -2.79 Total: -6.67 kcal Atomic # 7 Polarization: -50.68 SS G_CDS: 0.85 Total: -49.83 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.07 Total: -8.33 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.23 -6.16 -38.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865942884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.855 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds