Wall clock time and date at job start Mon Mar 30 2020 05:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47372 * 2 1 4 4 C 1.33135 * 120.00081 * 125.00295 * 3 2 1 5 5 F 1.35102 * 119.99889 * 359.97438 * 4 3 2 6 6 C 1.47259 * 120.00146 * 180.02562 * 4 3 2 7 7 O 1.21624 * 119.99684 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00565 * 179.97438 * 6 4 3 9 9 C 1.40059 * 120.00390 * 179.97438 * 8 6 4 10 10 C 1.40431 * 125.97653 * 359.97438 * 9 8 6 11 11 C 1.35240 * 107.86381 * 179.73291 * 10 9 8 12 12 N 1.34962 * 107.86669 * 0.42698 * 11 10 9 13 13 C 1.46500 * 125.97410 * 179.83381 * 12 11 10 14 14 C 1.50706 * 109.47299 * 124.71196 * 13 12 11 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46758 * 269.72576 * 18 16 14 20 20 H 1.48499 * 109.47026 * 29.72423 * 18 16 14 21 21 H 1.48496 * 109.47474 * 149.72459 * 18 16 14 22 22 N 1.31239 * 125.97803 * 179.97438 * 9 8 6 23 23 H 1.08993 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47338 * 300.00575 * 1 2 3 25 25 H 1.09004 * 109.46777 * 60.00283 * 1 2 3 26 26 H 1.09000 * 109.46897 * 239.99150 * 2 1 3 27 27 H 1.09004 * 109.46777 * 119.99717 * 2 1 3 28 28 H 1.08003 * 119.99975 * 304.99686 * 3 2 1 29 29 H 0.97006 * 119.99140 * 0.02562 * 8 6 4 30 30 H 1.07997 * 126.06524 * 0.02562 * 10 9 8 31 31 H 1.07999 * 126.05941 * 180.25841 * 11 10 9 32 32 H 1.09004 * 109.47078 * 4.71958 * 13 12 11 33 33 H 1.08993 * 109.47364 * 244.71729 * 13 12 11 34 34 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.8779 1.8279 0.9444 5 9 3.2850 0.9674 1.9031 6 6 3.3684 3.2164 0.9448 7 8 3.0014 3.9911 0.0820 8 7 4.2238 3.6288 1.9011 9 6 4.6907 4.9492 1.9011 10 6 4.3519 5.9440 0.9696 11 6 5.0029 7.0772 1.3176 12 7 5.7345 6.8125 2.4204 13 6 6.5960 7.7615 3.1299 14 6 6.1870 7.8250 4.5790 15 1 5.3675 7.2187 4.9358 16 6 6.8589 8.6570 5.4492 17 7 7.8602 9.3913 5.0158 18 14 6.3524 8.7352 7.2455 19 1 5.3275 9.7948 7.4250 20 1 5.7876 7.4252 7.6580 21 1 7.5392 9.0478 8.0814 22 7 5.5214 5.4733 2.7715 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.8933 -0.5140 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 1.7067 2.1087 -0.7662 29 1 4.5167 3.0107 2.5890 30 1 3.6857 5.8264 0.1277 31 1 4.9491 8.0250 0.8026 32 1 6.4956 8.7495 2.6805 33 1 7.6331 7.4338 3.0591 34 1 8.1234 9.3505 4.0831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000865942884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:12 Heat of formation + Delta-G solvation = -13.496623 kcal Electronic energy + Delta-G solvation = -19171.370982 eV Core-core repulsion = 15827.081397 eV Total energy + Delta-G solvation = -3344.289586 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 267.112 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.02342 -42.37920 -40.74355 -36.73239 -36.02684 -35.56686 -32.87041 -31.38531 -31.09623 -28.36286 -26.22629 -24.90174 -23.29470 -22.33715 -21.30979 -20.80787 -19.34534 -19.18429 -18.25071 -17.47120 -17.22013 -16.71541 -16.26676 -16.04128 -15.70603 -15.50517 -15.11007 -15.04826 -14.33556 -14.15718 -13.98859 -13.89525 -13.72214 -13.29629 -13.21181 -12.62446 -12.30993 -12.15213 -11.99114 -11.94309 -11.75243 -11.21206 -11.04300 -10.70529 -10.27392 -9.91626 -9.28870 -8.80291 -6.58037 -0.12091 0.95958 1.13515 1.49489 1.53856 1.57393 1.77430 2.09028 2.16423 2.46940 2.93289 2.99397 3.57242 3.79861 4.02672 4.06262 4.08945 4.37537 4.50662 4.58610 4.65402 4.71858 4.76367 4.77788 4.95644 5.08693 5.20419 5.26331 5.42675 5.52591 5.71360 5.88222 6.03483 6.23620 6.39039 6.68340 6.87845 7.17433 8.56692 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.034344 B = 0.003499 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.074992 B = 7999.286477 C = 8496.232910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.061 4.061 4 C -0.027 4.027 5 F -0.137 7.137 6 C 0.556 3.444 7 O -0.524 6.524 8 N -0.621 5.621 9 C 0.263 3.737 10 C -0.288 4.288 11 C 0.059 3.941 12 N -0.341 5.341 13 C 0.258 3.742 14 C -0.623 4.623 15 H 0.044 0.956 16 C -0.018 4.018 17 N -0.923 5.923 18 Si 1.122 2.878 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.275 1.275 22 N -0.344 5.344 23 H 0.076 0.924 24 H 0.049 0.951 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.076 0.924 28 H 0.161 0.839 29 H 0.424 0.576 30 H 0.175 0.825 31 H 0.207 0.793 32 H 0.058 0.942 33 H 0.018 0.982 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.158 -16.844 -11.080 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C -0.082 4.082 4 C -0.049 4.049 5 F -0.116 7.116 6 C 0.344 3.656 7 O -0.401 6.401 8 N -0.269 5.269 9 C 0.008 3.992 10 C -0.318 4.318 11 C -0.089 4.089 12 N -0.123 5.123 13 C 0.139 3.861 14 C -0.661 4.661 15 H 0.062 0.938 16 C -0.218 4.218 17 N -0.559 5.559 18 Si 0.943 3.057 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.200 1.200 22 N -0.175 5.175 23 H 0.095 0.905 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.178 0.822 29 H 0.262 0.738 30 H 0.192 0.808 31 H 0.223 0.777 32 H 0.075 0.925 33 H 0.035 0.965 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.258 -15.742 -9.121 21.938 hybrid contribution -0.115 -0.745 -1.552 1.725 sum -12.373 -16.487 -10.673 23.212 Atomic orbital electron populations 1.21718 0.92872 1.03302 1.02574 1.20861 0.97779 0.90786 1.04896 1.24410 0.89474 1.00265 0.94029 1.19099 1.05910 0.86083 0.93850 1.91485 1.89752 1.68017 1.62342 1.18719 0.78031 0.88161 0.80699 1.90748 1.57671 1.54362 1.37317 1.42424 1.45152 1.08394 1.30915 1.19407 0.97195 0.86916 0.95666 1.21759 1.12253 0.91244 1.06581 1.23244 0.94180 1.01729 0.89773 1.48621 1.35594 1.06935 1.21147 1.19464 0.88270 0.85667 0.92685 1.22308 1.20538 1.28746 0.94507 0.93767 1.27268 0.92985 0.91671 1.09859 1.70917 1.26999 1.39808 1.18162 0.82847 0.76443 0.76914 0.69518 1.19238 1.20676 1.19993 1.77299 1.23255 0.93164 1.23781 0.90496 0.93133 0.91307 0.87193 0.90557 0.82156 0.73829 0.80774 0.77659 0.92475 0.96458 0.92876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.90 71.98 0.71 -0.55 16 2 C -0.11 -1.10 6.35 29.85 0.19 -0.91 16 3 C -0.06 -0.94 9.10 24.54 0.22 -0.72 16 4 C -0.03 -0.58 7.37 23.50 0.17 -0.40 16 5 F -0.14 -2.89 15.54 44.97 0.70 -2.19 16 6 C 0.56 15.92 7.74 86.62 0.67 16.59 16 7 O -0.52 -16.94 13.35 -4.11 -0.05 -16.99 16 8 N -0.62 -20.14 5.44 -310.64 -1.69 -21.83 16 9 C 0.26 10.72 8.11 133.36 1.08 11.80 16 10 C -0.29 -11.07 9.61 22.11 0.21 -10.86 16 11 C 0.06 2.29 11.43 83.52 0.96 3.24 16 12 N -0.34 -16.13 3.67 -351.84 -1.29 -17.42 16 13 C 0.26 13.32 5.57 85.64 0.48 13.80 16 14 C -0.62 -35.69 9.24 25.60 0.24 -35.46 16 15 H 0.04 2.66 7.81 -2.91 -0.02 2.64 16 16 C -0.02 -1.01 5.46 84.65 0.46 -0.55 16 17 N -0.92 -53.99 13.65 21.45 0.29 -53.69 16 18 Si 1.12 50.05 29.90 68.60 2.05 52.10 16 19 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 22 N -0.34 -16.44 12.42 -54.49 -0.68 -17.12 16 23 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 24 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.11 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.08 0.89 7.04 -2.39 -0.02 0.87 16 28 H 0.16 2.31 7.50 -2.91 -0.02 2.29 16 29 H 0.42 12.11 8.37 -92.70 -0.78 11.33 16 30 H 0.18 6.24 5.91 -2.91 -0.02 6.23 16 31 H 0.21 6.13 8.06 -2.91 -0.02 6.11 16 32 H 0.06 2.80 7.94 -2.39 -0.02 2.78 16 33 H 0.02 0.95 8.00 -2.39 -0.02 0.93 16 34 H 0.26 15.10 7.22 -92.71 -0.67 14.43 16 Total: -1.00 -69.63 305.58 5.18 -64.45 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.46 Total: 16.72 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: 5.39 Total: -4.02 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -3.36 Total: -110.06 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.70 Total: -2.19 kcal Atomic # 14 Polarization: 50.05 SS G_CDS: 2.05 Total: 52.10 kcal Total: -69.63 5.18 -64.45 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000865942884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.953 kcal (2) G-P(sol) polarization free energy of solvation -69.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds