Wall clock time and date at job start Mon Mar 30 2020 04:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42895 * 109.47266 * 59.99864 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47246 * 179.97438 * 12 9 7 14 14 C 1.46845 * 110.99955 * 294.20770 * 13 12 9 15 15 C 1.53037 * 109.52225 * 174.15942 * 14 13 12 16 16 C 1.53120 * 109.27746 * 59.17801 * 15 14 13 17 17 C 1.53110 * 109.16464 * 302.34514 * 16 15 14 18 18 H 1.09005 * 109.53671 * 297.69512 * 17 16 15 19 19 C 1.52996 * 109.50701 * 177.59460 * 17 16 15 20 20 F 1.39899 * 109.47213 * 300.19799 * 19 17 16 21 21 F 1.39903 * 109.46750 * 60.19894 * 19 17 16 22 22 F 1.39899 * 109.47300 * 180.19541 * 19 17 16 23 23 C 1.46845 * 110.99872 * 169.99505 * 13 12 9 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00355 * 60.00228 * 11 9 7 26 26 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 27 27 H 1.09004 * 109.47253 * 59.99496 * 12 9 7 28 28 H 1.08998 * 109.46500 * 294.17501 * 14 13 12 29 29 H 1.09003 * 109.45996 * 54.14811 * 14 13 12 30 30 H 1.09001 * 109.50550 * 299.23861 * 15 14 13 31 31 H 1.09002 * 109.53767 * 179.14167 * 15 14 13 32 32 H 1.09004 * 109.52106 * 182.43883 * 16 15 14 33 33 H 1.09000 * 109.57245 * 62.28514 * 16 15 14 34 34 H 1.08995 * 109.46773 * 305.85990 * 23 13 12 35 35 H 1.08999 * 109.46075 * 65.83203 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0214 -2.6367 -0.0014 13 7 5.4904 -2.6368 -0.0014 14 6 6.0166 -2.0735 -1.2513 15 6 7.5395 -1.9549 -1.1575 16 6 8.1401 -3.3411 -0.9078 17 6 7.5395 -3.9257 0.3735 18 1 7.8027 -3.2930 1.2212 19 6 8.0893 -5.3356 0.5984 20 9 7.7526 -6.1467 -0.4907 21 9 9.4814 -5.2786 0.7246 22 9 7.5367 -5.8708 1.7669 23 6 6.0165 -3.9871 0.2354 24 1 -0.4850 0.8401 0.0004 25 1 3.7018 -0.9253 1.9982 26 1 3.6577 -3.1515 0.8880 27 1 3.6583 -3.1496 -0.8920 28 1 5.7538 -2.7269 -2.0832 29 1 5.5848 -1.0860 -1.4147 30 1 7.8028 -1.2906 -0.3344 31 1 7.9318 -1.5510 -2.0908 32 1 9.2211 -3.2551 -0.7972 33 1 7.9109 -3.9952 -1.7490 34 1 5.5847 -4.3897 1.1516 35 1 5.7537 -4.6316 -0.6035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929123860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:00 Heat of formation + Delta-G solvation = -212.054798 kcal Electronic energy + Delta-G solvation = -21504.599542 eV Core-core repulsion = 17701.010641 eV Total energy + Delta-G solvation = -3803.588901 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.21294 -47.69803 -47.67116 -39.08202 -36.18300 -33.41836 -32.27493 -31.56728 -28.71968 -25.92611 -25.49788 -22.93234 -22.49008 -20.40667 -19.90484 -18.41634 -18.35320 -17.74558 -17.11752 -15.48297 -15.10404 -14.89558 -14.79843 -14.55230 -14.47572 -14.12294 -13.96045 -13.86674 -13.85287 -13.69454 -13.45464 -13.21785 -12.79323 -12.70306 -11.98515 -11.58465 -11.46986 -11.21632 -10.97874 -10.77998 -10.72696 -10.59783 -10.39729 -9.78468 -9.18045 -8.68465 -8.47571 -7.95070 -6.16488 -4.28857 2.64018 3.42941 3.47039 3.59316 3.61619 3.84738 3.94813 4.31925 4.47435 4.65648 4.69931 4.92802 5.13461 5.15603 5.20314 5.45068 5.57782 5.60790 5.65165 5.79876 5.83211 5.87799 5.98893 6.18065 6.19235 6.33078 6.54249 7.18241 7.27104 7.45462 7.61746 8.25018 8.79353 9.05031 9.47020 10.93915 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037271 B = 0.004785 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.081518 B = 5850.811354 C = 6147.989970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.082 3.918 3 Si 0.917 3.083 4 H -0.278 1.278 5 H -0.269 1.269 6 H -0.307 1.307 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.200 3.800 10 H 0.059 0.941 11 O -0.575 6.575 12 C 0.041 3.959 13 N -0.525 5.525 14 C 0.048 3.952 15 C -0.111 4.111 16 C -0.118 4.118 17 C -0.129 4.129 18 H 0.123 0.877 19 C 0.455 3.545 20 F -0.184 7.184 21 F -0.186 7.186 22 F -0.183 7.183 23 C 0.058 3.942 24 H 0.266 0.734 25 H 0.360 0.640 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.100 -8.313 -0.673 19.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.122 4.122 3 Si 0.747 3.253 4 H -0.204 1.204 5 H -0.194 1.194 6 H -0.235 1.235 7 C -0.603 4.603 8 H 0.091 0.909 9 C 0.142 3.858 10 H 0.076 0.924 11 O -0.381 6.381 12 C -0.086 4.086 13 N -0.249 5.249 14 C -0.079 4.079 15 C -0.149 4.149 16 C -0.155 4.155 17 C -0.149 4.149 18 H 0.141 0.859 19 C 0.400 3.600 20 F -0.166 7.166 21 F -0.167 7.167 22 F -0.165 7.165 23 C -0.071 4.071 24 H 0.075 0.925 25 H 0.206 0.794 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 17.378 -7.569 -0.743 18.969 hybrid contribution -0.180 -0.460 -0.206 0.535 sum 17.198 -8.030 -0.949 19.004 Atomic orbital electron populations 1.69962 1.06693 1.27530 1.48799 1.25013 0.94673 1.00012 0.92525 0.86198 0.79036 0.81514 0.78589 1.20371 1.19356 1.23483 1.21536 0.89865 0.94898 1.54022 0.90925 1.19873 0.93104 0.86877 0.85952 0.92370 1.86358 1.77579 1.57788 1.16370 1.22856 0.83730 1.01357 1.00673 1.61895 1.09522 1.18565 1.34936 1.22189 0.94544 1.01064 0.90143 1.21538 0.95204 0.95623 1.02522 1.21651 1.00342 0.98269 0.95276 1.22525 0.98641 0.90122 1.03571 0.85923 1.20673 0.75682 0.89893 0.73748 1.93161 1.92112 1.76194 1.55119 1.93163 1.30998 1.96797 1.95737 1.93182 1.85320 1.88338 1.49629 1.22014 0.91020 0.92073 1.01977 0.92487 0.79386 0.90974 0.94650 0.95108 0.89449 0.90514 0.90969 0.90730 0.91059 0.89760 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.83 13.96 55.43 0.77 -26.06 16 2 C 0.08 2.34 5.47 -17.82 -0.10 2.24 16 3 Si 0.92 22.94 26.18 -169.99 -4.45 18.49 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.27 -6.61 6.54 56.52 0.37 -6.24 16 6 H -0.31 -7.64 7.11 56.52 0.40 -7.23 16 7 C -0.57 -15.32 9.34 -34.44 -0.32 -15.64 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.20 4.51 2.18 -27.88 -0.06 4.45 16 10 H 0.06 1.37 5.48 -51.93 -0.28 1.09 16 11 O -0.58 -12.80 10.90 -35.23 -0.38 -13.19 16 12 C 0.04 0.77 4.56 -3.83 -0.02 0.75 16 13 N -0.53 -8.33 4.52 -234.67 -1.06 -9.39 16 14 C 0.05 0.71 5.29 -3.83 -0.02 0.69 16 15 C -0.11 -1.28 6.09 -26.65 -0.16 -1.44 16 16 C -0.12 -1.22 5.04 -26.61 -0.13 -1.35 16 17 C -0.13 -1.45 2.33 -90.54 -0.21 -1.66 16 18 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 19 C 0.45 5.17 2.69 37.16 0.10 5.27 16 20 F -0.18 -2.22 16.22 2.25 0.04 -2.18 16 21 F -0.19 -2.10 16.86 2.25 0.04 -2.06 16 22 F -0.18 -2.23 16.82 2.25 0.04 -2.19 16 23 C 0.06 0.77 4.50 -3.83 -0.02 0.75 16 24 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.36 7.16 9.04 45.56 0.41 7.57 16 26 H 0.07 1.33 7.99 -51.93 -0.41 0.92 16 27 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.09 1.45 6.21 -51.93 -0.32 1.13 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 33 H 0.07 0.74 7.74 -51.93 -0.40 0.33 16 34 H 0.08 1.11 7.70 -51.93 -0.40 0.71 16 35 H 0.04 0.54 7.78 -51.93 -0.40 0.14 16 LS Contribution 290.52 15.07 4.38 4.38 Total: -1.00 -29.72 290.52 -5.50 -35.22 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -3.92 Total: 2.94 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.94 Total: -5.95 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.29 Total: -35.45 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -0.38 Total: -13.19 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.11 Total: -6.43 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.45 Total: 18.49 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.72 -5.50 -35.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929123860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.836 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds