Wall clock time and date at job start Mon Mar 30 2020 04:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 O 1.42895 * 109.47266 * 59.99864 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46896 * 109.47246 * 179.97438 * 12 9 7 14 14 C 1.46845 * 110.99955 * 294.20770 * 13 12 9 15 15 C 1.53037 * 109.52225 * 174.15942 * 14 13 12 16 16 C 1.53120 * 109.27746 * 59.17801 * 15 14 13 17 17 C 1.53110 * 109.16464 * 302.34514 * 16 15 14 18 18 H 1.09005 * 109.53671 * 297.69512 * 17 16 15 19 19 C 1.52996 * 109.50701 * 177.59460 * 17 16 15 20 20 F 1.39899 * 109.47213 * 300.19799 * 19 17 16 21 21 F 1.39903 * 109.46750 * 60.19894 * 19 17 16 22 22 F 1.39899 * 109.47300 * 180.19541 * 19 17 16 23 23 C 1.46845 * 110.99872 * 169.99505 * 13 12 9 24 24 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 25 25 H 0.96698 * 114.00355 * 60.00228 * 11 9 7 26 26 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 27 27 H 1.09004 * 109.47253 * 59.99496 * 12 9 7 28 28 H 1.08998 * 109.46500 * 294.17501 * 14 13 12 29 29 H 1.09003 * 109.45996 * 54.14811 * 14 13 12 30 30 H 1.09001 * 109.50550 * 299.23861 * 15 14 13 31 31 H 1.09002 * 109.53767 * 179.14167 * 15 14 13 32 32 H 1.09004 * 109.52106 * 182.43883 * 16 15 14 33 33 H 1.09000 * 109.57245 * 62.28514 * 16 15 14 34 34 H 1.08995 * 109.46773 * 305.85990 * 23 13 12 35 35 H 1.08999 * 109.46075 * 65.83203 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 1 3.8751 -0.6798 -0.8895 11 8 3.9874 -0.5213 1.1674 12 6 4.0214 -2.6367 -0.0014 13 7 5.4904 -2.6368 -0.0014 14 6 6.0166 -2.0735 -1.2513 15 6 7.5395 -1.9549 -1.1575 16 6 8.1401 -3.3411 -0.9078 17 6 7.5395 -3.9257 0.3735 18 1 7.8027 -3.2930 1.2212 19 6 8.0893 -5.3356 0.5984 20 9 7.7526 -6.1467 -0.4907 21 9 9.4814 -5.2786 0.7246 22 9 7.5367 -5.8708 1.7669 23 6 6.0165 -3.9871 0.2354 24 1 -0.4850 0.8401 0.0004 25 1 3.7018 -0.9253 1.9982 26 1 3.6577 -3.1515 0.8880 27 1 3.6583 -3.1496 -0.8920 28 1 5.7538 -2.7269 -2.0832 29 1 5.5848 -1.0860 -1.4147 30 1 7.8028 -1.2906 -0.3344 31 1 7.9318 -1.5510 -2.0908 32 1 9.2211 -3.2551 -0.7972 33 1 7.9109 -3.9952 -1.7490 34 1 5.5847 -4.3897 1.1516 35 1 5.7537 -4.6316 -0.6035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929123860.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:59 Heat of formation + Delta-G solvation = -233.573511 kcal Electronic energy + Delta-G solvation = -21505.532663 eV Core-core repulsion = 17701.010641 eV Total energy + Delta-G solvation = -3804.522022 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -51.12259 -48.59984 -48.59318 -40.25302 -37.84286 -34.68601 -34.40668 -32.56081 -30.45433 -27.15866 -26.90117 -24.24807 -23.60306 -21.92444 -20.98814 -19.52653 -19.27032 -19.26477 -18.39738 -16.90705 -16.54525 -16.49892 -16.26968 -15.61995 -15.56109 -15.26348 -15.04633 -14.95813 -14.89730 -14.76935 -14.71822 -14.62892 -14.27007 -13.84327 -13.45487 -13.02186 -12.89920 -12.68911 -12.61820 -12.36879 -11.84101 -11.79144 -11.62442 -11.48368 -11.02151 -10.86610 -10.33561 -9.24711 -8.36270 -6.51304 1.42175 1.45672 1.59862 1.72230 2.38736 2.62602 2.90708 2.99374 3.05244 3.21051 3.72698 3.77181 3.99562 4.05922 4.12363 4.21503 4.33737 4.45571 4.51037 4.61757 4.70766 4.82008 4.84951 4.97276 5.03162 5.10832 5.35855 5.45803 5.47174 6.04715 6.08074 6.16708 6.62066 7.21017 7.35826 8.77981 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.037271 B = 0.004785 C = 0.004553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.081518 B = 5850.811354 C = 6147.989970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.031 3.969 3 Si 0.977 3.023 4 H -0.275 1.275 5 H -0.261 1.261 6 H -0.305 1.305 7 C -0.566 4.566 8 H 0.040 0.960 9 C 0.208 3.792 10 H 0.053 0.947 11 O -0.577 6.577 12 C 0.053 3.947 13 N -0.529 5.529 14 C 0.043 3.957 15 C -0.103 4.103 16 C -0.114 4.114 17 C -0.122 4.122 18 H 0.130 0.870 19 C 0.460 3.540 20 F -0.188 7.188 21 F -0.182 7.182 22 F -0.189 7.189 23 C 0.058 3.942 24 H 0.268 0.732 25 H 0.371 0.629 26 H 0.072 0.928 27 H 0.028 0.972 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.575 -8.168 -0.699 21.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.169 4.169 3 Si 0.805 3.195 4 H -0.201 1.201 5 H -0.185 1.185 6 H -0.233 1.233 7 C -0.604 4.604 8 H 0.058 0.942 9 C 0.150 3.850 10 H 0.071 0.929 11 O -0.384 6.384 12 C -0.074 4.074 13 N -0.253 5.253 14 C -0.085 4.085 15 C -0.141 4.141 16 C -0.151 4.151 17 C -0.142 4.142 18 H 0.148 0.852 19 C 0.405 3.595 20 F -0.170 7.170 21 F -0.164 7.164 22 F -0.170 7.170 23 C -0.071 4.071 24 H 0.077 0.923 25 H 0.219 0.781 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.111 0.889 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 19.874 -7.441 -0.765 21.235 hybrid contribution -0.967 -0.590 -0.188 1.148 sum 18.907 -8.031 -0.953 20.564 Atomic orbital electron populations 1.70075 1.08311 1.28457 1.50903 1.25804 0.95246 1.03366 0.92481 0.85245 0.77984 0.77704 0.78611 1.20085 1.18507 1.23285 1.21886 0.92434 0.93447 1.52673 0.94206 1.19636 0.90167 0.89267 0.85928 0.92949 1.86295 1.77238 1.58073 1.16760 1.22504 0.86039 0.98493 1.00401 1.61819 1.07365 1.20287 1.35814 1.22268 0.96791 0.99741 0.89655 1.21495 0.92602 0.96422 1.03570 1.21661 1.01409 0.97384 0.94691 1.22465 0.96903 0.90257 1.04560 0.85230 1.20606 0.75737 0.89682 0.73429 1.93159 1.92162 1.76347 1.55285 1.93172 1.30723 1.96767 1.95706 1.93177 1.85437 1.88438 1.49969 1.22028 0.92579 0.90498 1.01953 0.92297 0.78104 0.90944 0.95416 0.94846 0.91638 0.90785 0.88905 0.88655 0.90792 0.89784 0.94128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.43 13.96 21.45 0.30 -57.13 16 2 C 0.03 1.78 5.47 84.66 0.46 2.24 16 3 Si 0.98 47.07 26.18 68.60 1.80 48.87 16 4 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 5 H -0.26 -12.12 6.54 99.48 0.65 -11.47 16 6 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 7 C -0.57 -31.11 9.34 25.60 0.24 -30.87 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 9 C 0.21 9.29 2.18 29.85 0.06 9.35 16 10 H 0.05 2.44 5.48 -2.39 -0.01 2.42 16 11 O -0.58 -24.78 10.90 -148.98 -1.62 -26.41 16 12 C 0.05 1.98 4.56 86.30 0.39 2.37 16 13 N -0.53 -15.96 4.52 -896.36 -4.06 -20.02 16 14 C 0.04 1.19 5.29 86.33 0.46 1.65 16 15 C -0.10 -2.07 6.09 30.65 0.19 -1.88 16 16 C -0.11 -1.98 5.04 30.67 0.15 -1.83 16 17 C -0.12 -2.42 2.33 -10.74 -0.02 -2.45 16 18 H 0.13 2.45 8.14 -2.38 -0.02 2.43 16 19 C 0.46 9.33 2.69 71.98 0.19 9.53 16 20 F -0.19 -4.10 16.22 44.97 0.73 -3.38 16 21 F -0.18 -3.61 16.86 44.97 0.76 -2.85 16 22 F -0.19 -4.23 16.82 44.97 0.76 -3.47 16 23 C 0.06 1.43 4.50 86.33 0.39 1.82 16 24 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 25 H 0.37 14.22 9.04 -74.06 -0.67 13.55 16 26 H 0.07 2.64 7.99 -2.39 -0.02 2.62 16 27 H 0.03 1.05 8.12 -2.38 -0.02 1.03 16 28 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.07 2.09 6.21 -2.39 -0.01 2.08 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 1.33 7.88 -2.38 -0.02 1.31 16 33 H 0.07 1.28 7.74 -2.39 -0.02 1.27 16 34 H 0.08 2.08 7.70 -2.39 -0.02 2.07 16 35 H 0.04 1.02 7.78 -2.39 -0.02 1.00 16 Total: -1.00 -62.96 290.52 1.56 -61.40 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.38 Total: 13.06 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 2.52 Total: -10.07 kcal Atomic # 7 Polarization: -73.39 SS G_CDS: -3.76 Total: -77.15 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -1.62 Total: -26.41 kcal Atomic # 9 Polarization: -11.94 SS G_CDS: 2.24 Total: -9.70 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.80 Total: 48.87 kcal Total: -62.96 1.56 -61.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929123860.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.174 kcal (2) G-P(sol) polarization free energy of solvation -62.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds