Wall clock time and date at job start Mon Mar 30 2020 06:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36940 * 119.99939 * 2 1 4 4 H 1.08001 * 120.00039 * 203.03241 * 3 2 1 5 5 C 1.38812 * 119.99894 * 23.03240 * 3 2 1 6 6 N 1.31623 * 120.00006 * 13.18636 * 5 3 2 7 7 Si 1.86796 * 119.99724 * 193.18826 * 5 3 2 8 8 H 1.48495 * 109.47503 * 59.99893 * 7 5 3 9 9 H 1.48500 * 109.46992 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47197 * 299.99512 * 7 5 3 11 11 C 1.46500 * 120.00373 * 180.26783 * 2 1 3 12 12 C 1.53004 * 109.46914 * 90.00201 * 11 2 1 13 13 H 1.08999 * 109.48028 * 305.00645 * 12 11 2 14 14 C 1.53088 * 109.48370 * 184.97889 * 12 11 2 15 15 C 1.53205 * 109.15081 * 297.62056 * 14 12 11 16 16 C 1.53182 * 109.03756 * 303.02186 * 15 14 12 17 17 C 1.53095 * 109.16174 * 56.98483 * 16 15 14 18 18 H 1.08997 * 109.47986 * 62.36738 * 17 16 15 19 19 C 1.52997 * 109.47753 * 182.40799 * 17 16 15 20 20 F 1.39896 * 109.46959 * 179.97438 * 19 17 16 21 21 F 1.39906 * 109.46891 * 299.93828 * 19 17 16 22 22 F 1.39895 * 109.47276 * 59.93903 * 19 17 16 23 23 O 1.42897 * 109.41292 * 302.38778 * 17 16 15 24 24 H 1.08998 * 109.47231 * 274.86249 * 1 2 3 25 25 H 1.08997 * 109.47101 * 34.86627 * 1 2 3 26 26 H 1.09005 * 109.46677 * 154.86523 * 1 2 3 27 27 H 0.96992 * 119.99504 * 180.02562 * 6 5 3 28 28 H 1.08995 * 109.47937 * 210.00415 * 11 2 1 29 29 H 1.09003 * 109.46873 * 330.00754 * 11 2 1 30 30 H 1.08999 * 109.52046 * 57.53349 * 14 12 11 31 31 H 1.08992 * 109.52678 * 177.71755 * 14 12 11 32 32 H 1.09000 * 109.53896 * 183.15279 * 15 14 12 33 33 H 1.09000 * 109.61281 * 62.93489 * 15 14 12 34 34 H 1.08994 * 109.52349 * 297.07614 * 16 15 14 35 35 H 1.09004 * 109.51882 * 176.88782 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1651 1.2232 -0.3659 5 6 1.5386 2.3402 0.4703 6 7 0.4142 2.2594 1.1497 7 14 2.3121 4.0079 0.1390 8 1 2.4103 4.2257 -1.3266 9 1 1.4703 5.0724 0.7418 10 1 3.6702 4.0515 0.7380 11 6 2.1976 -1.2687 -0.0059 12 6 2.4526 -1.7035 -1.4505 13 1 1.5064 -1.7455 -1.9900 14 6 3.1071 -3.0874 -1.4592 15 6 4.4636 -3.0063 -0.7517 16 6 5.3277 -1.9500 -1.4475 17 6 4.5872 -0.6101 -1.4393 18 1 4.4333 -0.2861 -0.4100 19 6 5.4175 0.4363 -2.1853 20 9 4.7404 1.6604 -2.1781 21 9 6.6565 0.5857 -1.5529 22 9 5.6152 0.0196 -3.5060 23 8 3.3216 -0.7629 -2.0849 24 1 -0.3633 0.0871 1.0239 25 1 -0.3633 0.8432 -0.5875 26 1 -0.3633 -0.9304 -0.4365 27 1 -0.0130 3.0660 1.4780 28 1 3.1500 -1.1408 0.5085 29 1 1.6085 -2.0308 0.5042 30 1 2.4655 -3.7970 -0.9369 31 1 3.2522 -3.4154 -2.4885 32 1 4.9602 -3.9753 -0.8032 33 1 4.3160 -2.7272 0.2916 34 1 5.5176 -2.2549 -2.4765 35 1 6.2741 -1.8464 -0.9167 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929488713.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:50 Heat of formation + Delta-G solvation = -198.729649 kcal Electronic energy + Delta-G solvation = -22658.946535 eV Core-core repulsion = 18855.935456 eV Total energy + Delta-G solvation = -3803.011079 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -51.13837 -48.66408 -48.60683 -40.87462 -37.08950 -34.65552 -33.85196 -32.47800 -28.96380 -27.88325 -27.00965 -24.65050 -23.65796 -22.91949 -20.60917 -19.45786 -19.25973 -19.16151 -18.37672 -17.16028 -16.88773 -16.43102 -15.86773 -15.64242 -15.46595 -15.39814 -15.05719 -14.88621 -14.78637 -14.76447 -14.59267 -14.41451 -13.91490 -13.56291 -13.27191 -12.89741 -12.78994 -12.66742 -12.53478 -12.20533 -12.02342 -11.85592 -11.77947 -11.69843 -11.10130 -10.68019 -10.36777 -8.67598 -7.78748 -5.24326 1.40860 1.44185 1.50387 1.55354 2.41975 2.51958 2.83817 3.00664 3.34228 3.51999 3.69730 3.76803 3.89742 4.04222 4.15632 4.19357 4.41878 4.48732 4.70329 4.80624 4.85729 4.89951 5.00893 5.12764 5.13200 5.27481 5.39479 5.43422 5.70629 5.76315 6.15234 6.39088 7.20475 7.92077 8.34289 9.24149 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.017749 B = 0.010110 C = 0.007093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.210193 B = 2768.952357 C = 3946.468789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.614 5.614 3 C -0.237 4.237 4 H 0.073 0.927 5 C -0.053 4.053 6 N -0.939 5.939 7 Si 0.941 3.059 8 H -0.287 1.287 9 H -0.293 1.293 10 H -0.275 1.275 11 C 0.118 3.882 12 C 0.071 3.929 13 H 0.094 0.906 14 C -0.140 4.140 15 C -0.115 4.115 16 C -0.146 4.146 17 C 0.045 3.955 18 H 0.094 0.906 19 C 0.459 3.541 20 F -0.191 7.191 21 F -0.174 7.174 22 F -0.179 7.179 23 O -0.371 6.371 24 H 0.007 0.993 25 H 0.009 0.991 26 H 0.033 0.967 27 H 0.245 0.755 28 H 0.054 0.946 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 -12.595 -5.011 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.336 5.336 3 C -0.368 4.368 4 H 0.091 0.909 5 C -0.248 4.248 6 N -0.587 5.587 7 Si 0.771 3.229 8 H -0.214 1.214 9 H -0.219 1.219 10 H -0.201 1.201 11 C -0.008 4.008 12 C 0.012 3.988 13 H 0.112 0.888 14 C -0.179 4.179 15 C -0.152 4.152 16 C -0.183 4.183 17 C -0.014 4.014 18 H 0.111 0.889 19 C 0.404 3.596 20 F -0.172 7.172 21 F -0.156 7.156 22 F -0.161 7.161 23 O -0.290 6.290 24 H 0.025 0.975 25 H 0.028 0.972 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.088 0.912 34 H 0.104 0.896 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 9.538 -12.339 -5.109 16.411 hybrid contribution 0.142 1.694 -0.056 1.701 sum 9.680 -10.645 -5.165 15.287 Atomic orbital electron populations 1.20546 0.82941 0.95869 0.97629 1.44046 1.01990 1.01646 1.85953 1.19483 0.98454 0.86526 1.32307 0.90898 1.25549 0.98829 1.00949 0.99437 1.70187 1.20940 1.27093 1.40462 0.85719 0.78108 0.81479 0.77642 1.21419 1.21863 1.20065 1.21628 0.96576 0.87807 0.94830 1.23160 0.92157 0.87794 0.95677 0.88844 1.22156 0.97492 0.95782 1.02425 1.21598 0.94878 0.99316 0.99384 1.22254 0.99745 0.92416 1.03932 1.23129 0.86442 0.95029 0.96831 0.88856 1.20526 0.78793 0.82211 0.78035 1.93214 1.80112 1.47563 1.96321 1.93165 1.44299 1.96055 1.82053 1.93145 1.95298 1.89886 1.37739 1.87946 1.24319 1.64458 1.52313 0.97496 0.97210 0.94814 0.94596 0.92806 0.91290 0.88486 0.90446 0.88039 0.91202 0.89590 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.57 8.98 127.77 1.15 9.72 16 2 N -0.61 -29.98 2.90 -726.92 -2.11 -32.09 16 3 C -0.24 -12.99 9.11 84.03 0.77 -12.23 16 4 H 0.07 3.89 4.64 -2.91 -0.01 3.88 16 5 C -0.05 -3.07 5.09 84.86 0.43 -2.64 16 6 N -0.94 -56.60 10.72 21.65 0.23 -56.37 16 7 Si 0.94 47.52 29.57 68.60 2.03 49.55 16 8 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 9 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 10 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 11 C 0.12 4.30 4.47 86.38 0.39 4.69 16 12 C 0.07 2.24 3.53 30.63 0.11 2.35 16 13 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 14 C -0.14 -2.95 5.64 30.69 0.17 -2.78 16 15 C -0.11 -2.15 5.72 30.72 0.18 -1.98 16 16 C -0.15 -3.26 5.17 30.69 0.16 -3.10 16 17 C 0.05 1.45 1.48 30.62 0.05 1.50 16 18 H 0.09 3.32 4.99 -2.39 -0.01 3.31 16 19 C 0.46 15.52 2.85 71.98 0.21 15.72 16 20 F -0.19 -7.92 16.33 44.97 0.73 -7.19 16 21 F -0.17 -5.30 16.85 44.97 0.76 -4.54 16 22 F -0.18 -5.79 16.70 44.97 0.75 -5.04 16 23 O -0.37 -13.62 9.50 -148.98 -1.42 -15.04 16 24 H 0.01 0.36 7.35 -2.39 -0.02 0.35 16 25 H 0.01 0.50 7.33 -2.39 -0.02 0.48 16 26 H 0.03 1.36 8.03 -2.38 -0.02 1.34 16 27 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 28 H 0.05 1.96 4.88 -2.39 -0.01 1.94 16 29 H 0.07 2.24 8.07 -2.39 -0.02 2.22 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.38 6.74 -2.39 -0.02 1.37 16 34 H 0.09 1.83 7.74 -2.39 -0.02 1.81 16 35 H 0.10 1.85 7.88 -2.38 -0.02 1.83 16 Total: -1.00 -65.94 284.50 5.68 -60.25 By element: Atomic # 1 Polarization: -1.89 SS G_CDS: 1.11 Total: -0.78 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 3.60 Total: 11.25 kcal Atomic # 7 Polarization: -86.58 SS G_CDS: -1.88 Total: -88.46 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: -1.42 Total: -15.04 kcal Atomic # 9 Polarization: -19.01 SS G_CDS: 2.24 Total: -16.77 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -65.94 5.68 -60.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929488713.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.478 kcal (2) G-P(sol) polarization free energy of solvation -65.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds