Wall clock time and date at job start Mon Mar 30 2020 06:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00119 * 2 1 4 4 H 1.08000 * 119.99640 * 202.97817 * 3 2 1 5 5 C 1.38808 * 120.00081 * 22.96783 * 3 2 1 6 6 N 1.31622 * 119.99991 * 11.38228 * 5 3 2 7 7 Si 1.86797 * 120.00111 * 191.38081 * 5 3 2 8 8 H 1.48496 * 109.47389 * 60.00601 * 7 5 3 9 9 H 1.48502 * 109.47035 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47204 * 299.99953 * 7 5 3 11 11 C 1.46499 * 119.99784 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47238 * 270.00040 * 11 2 1 13 13 H 1.09003 * 109.47925 * 60.02624 * 12 11 2 14 14 C 1.53097 * 109.49392 * 180.02562 * 12 11 2 15 15 C 1.53176 * 109.15923 * 62.37933 * 14 12 11 16 16 C 1.53172 * 109.03824 * 56.98417 * 15 14 12 17 17 C 1.53090 * 109.16210 * 303.01749 * 16 15 14 18 18 H 1.08994 * 109.48112 * 297.62317 * 17 16 15 19 19 C 1.53001 * 109.48871 * 177.59381 * 17 16 15 20 20 F 1.39899 * 109.47764 * 300.03016 * 19 17 16 21 21 F 1.39904 * 109.46761 * 60.03167 * 19 17 16 22 22 F 1.39903 * 109.47035 * 180.02562 * 19 17 16 23 23 O 1.42900 * 109.41863 * 57.60995 * 17 16 15 24 24 H 1.08994 * 109.47281 * 274.26113 * 1 2 3 25 25 H 1.08996 * 109.46901 * 34.26637 * 1 2 3 26 26 H 1.09001 * 109.47080 * 154.26332 * 1 2 3 27 27 H 0.97004 * 120.00005 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.47382 * 150.00290 * 11 2 1 29 29 H 1.09000 * 109.47499 * 30.00509 * 11 2 1 30 30 H 1.08993 * 109.52377 * 182.28680 * 14 12 11 31 31 H 1.09002 * 109.51927 * 302.41619 * 14 12 11 32 32 H 1.09003 * 109.53971 * 176.85346 * 15 14 12 33 33 H 1.08997 * 109.54776 * 297.02618 * 15 14 12 34 34 H 1.08998 * 109.52436 * 183.11229 * 16 15 14 35 35 H 1.09006 * 109.52289 * 62.92252 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1654 1.2229 -0.3651 5 6 1.5382 2.3404 0.4691 6 7 0.3949 2.2630 1.1166 7 14 2.3379 4.0038 0.1814 8 1 2.4782 4.2399 -1.2780 9 1 1.4919 5.0693 0.7765 10 1 3.6797 4.0247 0.8175 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 1 1.5001 -1.8404 1.9571 14 6 3.2184 -3.0354 1.4444 15 6 4.5802 -2.8297 0.7739 16 6 5.3372 -1.7202 1.5103 17 6 4.4894 -0.4455 1.5066 18 1 4.3346 -0.1149 0.4797 19 6 5.2123 0.6505 2.2921 20 9 5.4109 0.2260 3.6103 21 9 6.4500 0.9129 1.6951 22 9 4.4369 1.8150 2.2891 23 8 3.2253 -0.7140 2.1165 24 1 -0.3633 0.0764 1.0248 25 1 -0.3633 0.8493 -0.5786 26 1 -0.3633 -0.9257 -0.4463 27 1 -0.0322 3.0697 1.4448 28 1 3.1500 -1.1387 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 3.3649 -3.3705 2.4711 31 1 2.6499 -3.7850 0.8940 32 1 5.1534 -3.7556 0.8211 33 1 4.4343 -2.5439 -0.2678 34 1 6.2845 -1.5291 1.0061 35 1 5.5265 -2.0289 2.5384 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929488714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:59 Heat of formation + Delta-G solvation = -177.038046 kcal Electronic energy + Delta-G solvation = -22921.225035 eV Core-core repulsion = 19119.154575 eV Total energy + Delta-G solvation = -3802.070460 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -49.54466 -47.14531 -46.87982 -39.42291 -35.18569 -33.36548 -32.18923 -30.66039 -27.35072 -25.93718 -25.45486 -23.20376 -22.18325 -21.17340 -19.11118 -17.91279 -17.68541 -17.59836 -16.48292 -15.58161 -15.16477 -14.87123 -14.47114 -13.93077 -13.86167 -13.81503 -13.48535 -13.22332 -13.11952 -13.09004 -13.02808 -12.83091 -12.47661 -12.03331 -11.65996 -11.28118 -11.23707 -10.87919 -10.72418 -10.58823 -10.47455 -10.24236 -9.95380 -9.80520 -9.70777 -9.02074 -8.41043 -6.65124 -5.63447 -3.08838 3.08457 3.46978 3.51181 3.53908 3.99200 4.31388 4.53600 4.59119 4.93860 4.97176 5.11082 5.20332 5.28627 5.44432 5.59994 5.64651 5.79296 5.83311 5.96415 5.97204 6.01316 6.10879 6.17187 6.43767 6.49090 6.72551 6.79839 7.40278 7.67145 7.76464 7.84972 8.46812 9.30606 9.93269 10.41696 11.42374 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.011406 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.293366 B = 2454.347347 C = 3586.688236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.594 5.594 3 C -0.247 4.247 4 H 0.060 0.940 5 C 0.016 3.984 6 N -0.904 5.904 7 Si 0.890 3.110 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.120 3.880 12 C 0.070 3.930 13 H 0.100 0.900 14 C -0.153 4.153 15 C -0.115 4.115 16 C -0.154 4.154 17 C 0.052 3.948 18 H 0.110 0.890 19 C 0.460 3.540 20 F -0.186 7.186 21 F -0.188 7.188 22 F -0.158 7.158 23 O -0.331 6.331 24 H 0.029 0.971 25 H 0.045 0.955 26 H -0.006 1.006 27 H 0.251 0.749 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.064 -9.651 -0.015 12.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.316 5.316 3 C -0.377 4.377 4 H 0.078 0.922 5 C -0.183 4.183 6 N -0.548 5.548 7 Si 0.719 3.281 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.202 1.202 11 C -0.009 4.009 12 C 0.010 3.990 13 H 0.118 0.882 14 C -0.191 4.191 15 C -0.152 4.152 16 C -0.192 4.192 17 C -0.008 4.008 18 H 0.127 0.873 19 C 0.406 3.594 20 F -0.168 7.168 21 F -0.170 7.170 22 F -0.139 7.139 23 O -0.249 6.249 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.013 0.987 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 7.871 -9.359 0.227 12.231 hybrid contribution 0.595 1.063 0.007 1.218 sum 8.466 -8.296 0.234 11.855 Atomic orbital electron populations 1.20802 0.82424 0.95442 0.99363 1.43865 1.01826 1.00286 1.85634 1.18844 0.97873 0.85265 1.35677 0.92198 1.24877 0.97480 0.98142 0.97812 1.70027 1.18229 1.27066 1.39516 0.86562 0.79360 0.84467 0.77662 1.21292 1.21676 1.20180 1.21519 0.96507 0.89611 0.93224 1.23176 0.93213 0.84819 0.97841 0.88236 1.22262 0.96600 0.99113 1.01150 1.21525 0.96094 0.97794 0.99827 1.22247 0.98947 0.95402 1.02637 1.22958 0.87156 0.92229 0.98440 0.87277 1.20338 0.77004 0.84118 0.77979 1.93130 1.95220 1.89933 1.38500 1.93129 1.45216 1.94782 1.83838 1.93323 1.74138 1.50264 1.96144 1.88045 1.26371 1.59699 1.50811 0.95259 0.93668 0.98716 0.93845 0.93408 0.93343 0.91703 0.90945 0.91540 0.91092 0.90394 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 9.01 59.85 0.54 4.52 16 2 N -0.59 -14.46 2.87 -181.12 -0.52 -14.98 16 3 C -0.25 -6.61 8.19 -15.06 -0.12 -6.73 16 4 H 0.06 1.57 6.57 -52.49 -0.35 1.23 16 5 C 0.02 0.44 5.13 -17.43 -0.09 0.35 16 6 N -0.90 -26.59 10.62 55.49 0.59 -26.00 16 7 Si 0.89 22.48 29.57 -169.99 -5.03 17.46 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 9 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 C 0.12 2.29 4.66 -4.04 -0.02 2.28 16 12 C 0.07 1.26 3.56 -26.68 -0.10 1.17 16 13 H 0.10 1.90 8.14 -51.93 -0.42 1.47 16 14 C -0.15 -2.05 5.64 -26.59 -0.15 -2.20 16 15 C -0.12 -1.41 5.72 -26.55 -0.15 -1.56 16 16 C -0.15 -2.15 5.17 -26.60 -0.14 -2.29 16 17 C 0.05 0.95 1.88 -26.68 -0.05 0.90 16 18 H 0.11 2.11 4.53 -51.93 -0.24 1.88 16 19 C 0.46 8.83 2.85 37.16 0.11 8.94 16 20 F -0.19 -3.48 16.70 2.25 0.04 -3.44 16 21 F -0.19 -3.26 16.85 2.25 0.04 -3.22 16 22 F -0.16 -3.65 17.26 2.25 0.04 -3.61 16 23 O -0.33 -6.92 9.49 -35.23 -0.33 -7.25 16 24 H 0.03 0.77 7.40 -51.93 -0.38 0.39 16 25 H 0.04 1.18 7.24 -51.93 -0.38 0.81 16 26 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.05 0.89 4.87 -51.93 -0.25 0.63 16 29 H 0.05 0.83 7.86 -51.93 -0.41 0.42 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.87 6.62 -51.93 -0.34 0.52 16 34 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 35 H 0.08 1.06 7.74 -51.93 -0.40 0.66 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -30.15 285.93 -5.43 -35.57 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -4.39 Total: -4.21 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -0.17 Total: 5.36 kcal Atomic # 7 Polarization: -41.05 SS G_CDS: 0.07 Total: -40.98 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.33 Total: -7.25 kcal Atomic # 9 Polarization: -10.38 SS G_CDS: 0.11 Total: -10.27 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.15 -5.43 -35.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929488714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.463 kcal (2) G-P(sol) polarization free energy of solvation -30.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds