Wall clock time and date at job start Mon Mar 30 2020 06:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36935 * 120.00119 * 2 1 4 4 H 1.08000 * 119.99640 * 202.97817 * 3 2 1 5 5 C 1.38808 * 120.00081 * 22.96783 * 3 2 1 6 6 N 1.31622 * 119.99991 * 11.38228 * 5 3 2 7 7 Si 1.86797 * 120.00111 * 191.38081 * 5 3 2 8 8 H 1.48496 * 109.47389 * 60.00601 * 7 5 3 9 9 H 1.48502 * 109.47035 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47204 * 299.99953 * 7 5 3 11 11 C 1.46499 * 119.99784 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47238 * 270.00040 * 11 2 1 13 13 H 1.09003 * 109.47925 * 60.02624 * 12 11 2 14 14 C 1.53097 * 109.49392 * 180.02562 * 12 11 2 15 15 C 1.53176 * 109.15923 * 62.37933 * 14 12 11 16 16 C 1.53172 * 109.03824 * 56.98417 * 15 14 12 17 17 C 1.53090 * 109.16210 * 303.01749 * 16 15 14 18 18 H 1.08994 * 109.48112 * 297.62317 * 17 16 15 19 19 C 1.53001 * 109.48871 * 177.59381 * 17 16 15 20 20 F 1.39899 * 109.47764 * 300.03016 * 19 17 16 21 21 F 1.39904 * 109.46761 * 60.03167 * 19 17 16 22 22 F 1.39903 * 109.47035 * 180.02562 * 19 17 16 23 23 O 1.42900 * 109.41863 * 57.60995 * 17 16 15 24 24 H 1.08994 * 109.47281 * 274.26113 * 1 2 3 25 25 H 1.08996 * 109.46901 * 34.26637 * 1 2 3 26 26 H 1.09001 * 109.47080 * 154.26332 * 1 2 3 27 27 H 0.97004 * 120.00005 * 179.97438 * 6 5 3 28 28 H 1.09006 * 109.47382 * 150.00290 * 11 2 1 29 29 H 1.09000 * 109.47499 * 30.00509 * 11 2 1 30 30 H 1.08993 * 109.52377 * 182.28680 * 14 12 11 31 31 H 1.09002 * 109.51927 * 302.41619 * 14 12 11 32 32 H 1.09003 * 109.53971 * 176.85346 * 15 14 12 33 33 H 1.08997 * 109.54776 * 297.02618 * 15 14 12 34 34 H 1.08998 * 109.52436 * 183.11229 * 16 15 14 35 35 H 1.09006 * 109.52289 * 62.92252 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1654 1.2229 -0.3651 5 6 1.5382 2.3404 0.4691 6 7 0.3949 2.2630 1.1166 7 14 2.3379 4.0038 0.1814 8 1 2.4782 4.2399 -1.2780 9 1 1.4919 5.0693 0.7765 10 1 3.6797 4.0247 0.8175 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7098 1.4432 13 1 1.5001 -1.8404 1.9571 14 6 3.2184 -3.0354 1.4444 15 6 4.5802 -2.8297 0.7739 16 6 5.3372 -1.7202 1.5103 17 6 4.4894 -0.4455 1.5066 18 1 4.3346 -0.1149 0.4797 19 6 5.2123 0.6505 2.2921 20 9 5.4109 0.2260 3.6103 21 9 6.4500 0.9129 1.6951 22 9 4.4369 1.8150 2.2891 23 8 3.2253 -0.7140 2.1165 24 1 -0.3633 0.0764 1.0248 25 1 -0.3633 0.8493 -0.5786 26 1 -0.3633 -0.9257 -0.4463 27 1 -0.0322 3.0697 1.4448 28 1 3.1500 -1.1387 -0.5133 29 1 1.6084 -2.0286 -0.5130 30 1 3.3649 -3.3705 2.4711 31 1 2.6499 -3.7850 0.8940 32 1 5.1534 -3.7556 0.8211 33 1 4.4343 -2.5439 -0.2678 34 1 6.2845 -1.5291 1.0061 35 1 5.5265 -2.0289 2.5384 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929488714.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:58 Heat of formation + Delta-G solvation = -195.443808 kcal Electronic energy + Delta-G solvation = -22922.023169 eV Core-core repulsion = 19119.154575 eV Total energy + Delta-G solvation = -3802.868594 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.07592 -48.62122 -48.52087 -40.79863 -37.04399 -34.59748 -33.78610 -32.44586 -28.90798 -27.86210 -26.96745 -24.61820 -23.57973 -22.87617 -20.53363 -19.41525 -19.18941 -19.14854 -18.36248 -17.18362 -16.61715 -16.40695 -15.96220 -15.59545 -15.39128 -15.36697 -15.00639 -14.80160 -14.72901 -14.69260 -14.54094 -14.41461 -13.91838 -13.46284 -13.15628 -13.02032 -12.72543 -12.59067 -12.54199 -12.14076 -12.01380 -11.75375 -11.72179 -11.65019 -11.15064 -10.56044 -10.33151 -8.63413 -7.75010 -5.18980 1.42391 1.47392 1.49383 1.62636 2.50185 2.56574 2.91367 3.08141 3.41578 3.58404 3.73792 3.81803 3.93871 4.09929 4.19110 4.22316 4.45519 4.52788 4.72840 4.82730 4.89102 4.90625 5.02132 5.13420 5.15788 5.33249 5.38713 5.43447 5.67823 5.80593 6.26799 6.41950 7.24430 7.95474 8.38057 9.29431 Molecular weight = 267.12amu Principal moments of inertia in cm(-1) A = 0.017319 B = 0.011406 C = 0.007805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.293366 B = 2454.347347 C = 3586.688236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.612 5.612 3 C -0.229 4.229 4 H 0.064 0.936 5 C -0.039 4.039 6 N -0.936 5.936 7 Si 0.932 3.068 8 H -0.276 1.276 9 H -0.299 1.299 10 H -0.277 1.277 11 C 0.116 3.884 12 C 0.069 3.931 13 H 0.080 0.920 14 C -0.141 4.141 15 C -0.112 4.112 16 C -0.148 4.148 17 C 0.053 3.947 18 H 0.095 0.905 19 C 0.455 3.545 20 F -0.184 7.184 21 F -0.176 7.176 22 F -0.187 7.187 23 O -0.369 6.369 24 H -0.001 1.001 25 H 0.016 0.984 26 H 0.033 0.967 27 H 0.242 0.758 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -12.050 -0.962 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.334 5.334 3 C -0.359 4.359 4 H 0.082 0.918 5 C -0.234 4.234 6 N -0.584 5.584 7 Si 0.762 3.238 8 H -0.202 1.202 9 H -0.226 1.226 10 H -0.203 1.203 11 C -0.010 4.010 12 C 0.009 3.991 13 H 0.098 0.902 14 C -0.180 4.180 15 C -0.149 4.149 16 C -0.186 4.186 17 C -0.006 4.006 18 H 0.113 0.887 19 C 0.401 3.599 20 F -0.166 7.166 21 F -0.158 7.158 22 F -0.169 7.169 23 O -0.288 6.288 24 H 0.017 0.983 25 H 0.035 0.965 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.557 -11.796 -0.740 15.200 hybrid contribution 0.137 1.730 0.292 1.759 sum 9.694 -10.067 -0.448 13.983 Atomic orbital electron populations 1.20535 0.82798 0.96050 0.97366 1.44104 1.02047 1.01579 1.85688 1.19080 0.97584 0.86185 1.33069 0.91848 1.25431 0.98294 1.00699 0.99015 1.70182 1.19672 1.26770 1.41731 0.85862 0.78296 0.81792 0.77860 1.20238 1.22590 1.20334 1.21745 0.96821 0.87924 0.94505 1.23116 0.93267 0.86775 0.95928 0.90162 1.22169 0.97004 0.96495 1.02292 1.21580 0.95392 0.98518 0.99376 1.22281 0.99148 0.93579 1.03581 1.23045 0.87001 0.93761 0.96815 0.88724 1.20650 0.77326 0.83559 0.78411 1.93126 1.95206 1.89762 1.38484 1.93144 1.44343 1.94724 1.83580 1.93259 1.75123 1.52159 1.96323 1.87985 1.27832 1.61071 1.51959 0.98282 0.96530 0.94857 0.94906 0.92327 0.90607 0.91162 0.88299 0.88080 0.90723 0.88369 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.61 9.01 127.77 1.15 9.76 16 2 N -0.61 -29.36 2.87 -726.95 -2.09 -31.45 16 3 C -0.23 -12.23 8.19 84.03 0.69 -11.54 16 4 H 0.06 3.30 6.57 -2.91 -0.02 3.28 16 5 C -0.04 -2.26 5.13 84.86 0.44 -1.82 16 6 N -0.94 -56.87 10.62 21.65 0.23 -56.64 16 7 Si 0.93 46.96 29.57 68.60 2.03 48.99 16 8 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 9 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 10 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 11 C 0.12 4.18 4.66 86.38 0.40 4.58 16 12 C 0.07 2.34 3.56 30.63 0.11 2.45 16 13 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 14 C -0.14 -3.22 5.64 30.69 0.17 -3.05 16 15 C -0.11 -2.20 5.72 30.71 0.18 -2.02 16 16 C -0.15 -3.61 5.17 30.68 0.16 -3.45 16 17 C 0.05 1.86 1.88 30.62 0.06 1.92 16 18 H 0.10 3.53 4.53 -2.39 -0.01 3.52 16 19 C 0.45 17.12 2.85 71.98 0.21 17.33 16 20 F -0.18 -6.73 16.70 44.97 0.75 -5.98 16 21 F -0.18 -5.85 16.85 44.97 0.76 -5.09 16 22 F -0.19 -8.77 17.26 44.97 0.78 -7.99 16 23 O -0.37 -15.14 9.49 -148.98 -1.41 -16.56 16 24 H 0.00 -0.06 7.40 -2.39 -0.02 -0.08 16 25 H 0.02 0.86 7.24 -2.39 -0.02 0.84 16 26 H 0.03 1.32 7.84 -2.39 -0.02 1.31 16 27 H 0.24 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.06 2.00 4.87 -2.38 -0.01 1.98 16 29 H 0.08 2.31 7.86 -2.39 -0.02 2.30 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.45 6.62 -2.39 -0.02 1.44 16 34 H 0.10 2.00 7.88 -2.39 -0.02 1.98 16 35 H 0.08 1.94 7.74 -2.38 -0.02 1.92 16 Total: -1.00 -66.67 285.93 5.70 -60.96 By element: Atomic # 1 Polarization: -1.50 SS G_CDS: 1.11 Total: -0.39 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 3.56 Total: 14.15 kcal Atomic # 7 Polarization: -86.23 SS G_CDS: -1.86 Total: -88.09 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -1.41 Total: -16.56 kcal Atomic # 9 Polarization: -21.35 SS G_CDS: 2.28 Total: -19.07 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -66.67 5.70 -60.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929488714.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.479 kcal (2) G-P(sol) polarization free energy of solvation -66.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds