Wall clock time and date at job start Mon Mar 30 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86806 * 120.00083 * 2 1 4 4 H 1.48499 * 109.46939 * 270.00235 * 3 2 1 5 5 H 1.48499 * 109.46890 * 29.99823 * 3 2 1 6 6 H 1.48502 * 109.47021 * 150.00285 * 3 2 1 7 7 C 1.39578 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00479 * 179.97438 * 7 2 1 9 9 N 1.36126 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00262 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00032 * 359.97438 * 10 9 7 12 12 C 1.48831 * 120.00522 * 179.97438 * 10 9 7 13 13 O 1.21446 * 119.99501 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00522 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99973 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.64436 * 323.29956 * 15 14 12 17 17 C 1.54594 * 110.72610 * 86.45328 * 15 14 12 18 18 C 1.53991 * 105.14285 * 140.31217 * 17 15 14 19 19 N 1.47905 * 107.22505 * 1.12969 * 18 17 15 20 20 C 1.46897 * 111.00050 * 214.25344 * 19 18 17 21 21 C 1.53002 * 117.49753 * 128.49390 * 20 19 18 22 22 C 1.53000 * 60.00246 * 252.51057 * 21 20 19 23 23 C 1.48813 * 105.67450 * 334.90354 * 19 18 17 24 24 H 0.97002 * 119.99751 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99966 * 359.97438 * 9 7 2 26 26 H 0.96998 * 119.99772 * 359.97438 * 14 12 10 27 27 H 1.09005 * 110.30718 * 21.40022 * 17 15 14 28 28 H 1.09001 * 110.39460 * 259.27402 * 17 15 14 29 29 H 1.09002 * 109.91707 * 120.58029 * 18 17 15 30 30 H 1.09002 * 109.91668 * 241.67819 * 18 17 15 31 31 H 1.08999 * 115.54947 * 274.20313 * 20 19 18 32 32 H 1.08995 * 117.49856 * 359.97438 * 21 20 19 33 33 H 1.09005 * 117.49905 * 145.02536 * 21 20 19 34 34 H 1.08996 * 117.50122 * 252.51474 * 22 21 20 35 35 H 1.09001 * 117.50187 * 107.49067 * 22 21 20 36 36 H 1.08998 * 110.51915 * 280.54171 * 23 19 18 37 37 H 1.09004 * 110.69711 * 157.49494 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4416 2.6527 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 3.0880 -1.2088 -0.0010 9 7 1.3275 -2.3877 -0.0016 10 6 2.0013 -3.5548 -0.0016 11 8 3.2163 -3.5549 -0.0011 12 6 1.2572 -4.8438 -0.0022 13 8 0.0428 -4.8438 -0.0022 14 7 1.9311 -6.0110 -0.0016 15 6 1.1986 -7.2797 -0.0028 16 1 0.2975 -7.2037 0.6058 17 6 0.8492 -7.7084 -1.4464 18 6 1.0651 -9.2328 -1.4767 19 7 1.4843 -9.6429 -0.1188 20 6 2.4391 -10.7577 -0.1768 21 6 3.7491 -10.6068 0.5991 22 6 3.7513 -10.5255 -0.9287 23 6 2.1034 -8.4356 0.4925 24 1 -0.4850 0.8401 0.0004 25 1 0.3575 -2.3877 -0.0016 26 1 2.9011 -6.0110 -0.0013 27 1 1.5136 -7.2181 -2.1580 28 1 -0.1898 -7.4689 -1.6729 29 1 0.1354 -9.7343 -1.7456 30 1 1.8438 -9.4833 -2.1972 31 1 1.9974 -11.7527 -0.2307 32 1 3.9026 -9.6803 1.1523 33 1 4.1695 -11.5028 1.0560 34 1 4.1730 -11.3680 -1.4769 35 1 3.9061 -9.5457 -1.3804 36 1 3.1243 -8.3062 0.1331 37 1 2.0829 -8.5012 1.5804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044678998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:06 Heat of formation + Delta-G solvation = -33.233527 kcal Electronic energy + Delta-G solvation = -20100.810581 eV Core-core repulsion = 16879.125444 eV Total energy + Delta-G solvation = -3221.685137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.26935 -39.19506 -37.28642 -35.97094 -34.38749 -33.24019 -31.41345 -29.51609 -28.68254 -25.86232 -23.59866 -22.94956 -22.38471 -20.55699 -20.23421 -19.32254 -18.35474 -17.43601 -16.69970 -16.04963 -15.71855 -15.21298 -14.74250 -14.57796 -14.32091 -13.95898 -13.84435 -13.06322 -12.84529 -12.69375 -12.65733 -12.13247 -11.93859 -11.78365 -11.71632 -11.39105 -11.20879 -10.99839 -10.70361 -10.55311 -10.44074 -10.37961 -10.35049 -9.73857 -8.80636 -8.63088 -8.29473 -8.24632 -6.69058 -4.01430 2.41414 3.12254 3.13728 3.18126 3.26279 3.41808 3.86919 4.06783 4.23247 4.32250 4.53503 4.59000 4.70371 4.81735 5.00833 5.03853 5.10222 5.17337 5.28884 5.34301 5.46071 5.59730 5.70866 5.75373 5.77695 5.83816 5.98822 6.08181 6.12592 6.51427 6.76688 6.81063 7.29074 7.65867 7.84339 8.30305 8.59642 8.93950 9.29572 9.82805 10.45710 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045339 B = 0.003562 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.427955 B = 7859.348226 C = 8221.150897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.498 5.498 10 C 0.393 3.607 11 O -0.599 6.599 12 C 0.516 3.484 13 O -0.543 6.543 14 N -0.709 5.709 15 C 0.144 3.856 16 H 0.103 0.897 17 C -0.145 4.145 18 C 0.037 3.963 19 N -0.482 5.482 20 C 0.015 3.985 21 C -0.183 4.183 22 C -0.216 4.216 23 C 0.024 3.976 24 H 0.281 0.719 25 H 0.405 0.595 26 H 0.409 0.591 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -17.598 -1.264 17.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.130 0.870 9 N -0.132 5.132 10 C 0.177 3.823 11 O -0.488 6.488 12 C 0.300 3.700 13 O -0.419 6.419 14 N -0.363 5.363 15 C 0.038 3.962 16 H 0.121 0.879 17 C -0.185 4.185 18 C -0.090 4.090 19 N -0.205 5.205 20 C -0.095 4.095 21 C -0.221 4.221 22 C -0.255 4.255 23 C -0.104 4.104 24 H 0.091 0.909 25 H 0.240 0.760 26 H 0.245 0.755 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.145 0.855 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.758 -17.626 -0.949 17.866 hybrid contribution 0.982 0.959 -0.542 1.476 sum 3.740 -16.667 -1.490 17.147 Atomic orbital electron populations 1.69484 1.06530 1.29406 1.45149 1.25594 0.95633 1.00499 0.95855 0.85718 0.79384 0.79639 0.78799 1.19884 1.20489 1.18878 1.19886 0.93989 0.81877 1.47941 0.86963 1.41567 1.10509 1.04228 1.56873 1.18940 0.87811 0.84202 0.91343 1.90579 1.12883 1.86613 1.58693 1.20701 0.87528 0.85829 0.75902 1.90694 1.14019 1.88034 1.49183 1.45637 1.10843 1.04296 1.75542 1.21740 0.95874 0.82202 0.96378 0.87931 1.22890 1.03498 0.94462 0.97625 1.22893 1.01127 0.95283 0.89717 1.64808 1.33715 1.04581 1.17383 1.23009 0.85476 0.96763 1.04252 1.23332 1.00101 1.04150 0.94478 1.23430 1.03589 1.03559 0.94935 1.23597 0.96841 0.89114 1.00856 0.90874 0.75976 0.75545 0.90769 0.90052 0.89969 0.93006 0.85542 0.87932 0.88241 0.88432 0.88695 0.92393 0.88936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.17 13.03 55.53 0.72 -22.45 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 19.98 29.56 -169.99 -5.02 14.95 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.31 -8.41 9.67 -15.15 -0.15 -8.56 16 8 H 0.11 3.14 7.15 -52.49 -0.38 2.77 16 9 N -0.50 -13.27 5.25 -11.59 -0.06 -13.33 16 10 C 0.39 9.84 7.82 -11.88 -0.09 9.74 16 11 O -0.60 -15.93 16.03 5.36 0.09 -15.84 16 12 C 0.52 11.08 7.86 -11.88 -0.09 10.99 16 13 O -0.54 -12.59 16.19 5.41 0.09 -12.50 16 14 N -0.71 -11.92 5.14 -52.64 -0.27 -12.19 16 15 C 0.14 2.02 3.35 -66.07 -0.22 1.80 16 16 H 0.10 1.60 7.69 -51.93 -0.40 1.20 16 17 C -0.15 -1.85 6.67 -25.38 -0.17 -2.02 16 18 C 0.04 0.39 6.58 -2.75 -0.02 0.37 16 19 N -0.48 -5.18 5.55 -222.25 -1.23 -6.41 16 20 C 0.01 0.13 6.33 -67.71 -0.43 -0.30 16 21 C -0.18 -1.50 9.57 -26.73 -0.26 -1.75 16 22 C -0.22 -1.79 8.86 -26.73 -0.24 -2.02 16 23 C 0.02 0.27 4.69 -1.74 -0.01 0.26 16 24 H 0.28 6.94 8.30 -40.82 -0.34 6.60 16 25 H 0.40 10.88 7.35 -40.82 -0.30 10.58 16 26 H 0.41 6.48 7.98 -40.82 -0.33 6.15 16 27 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 0.51 6.72 -51.93 -0.35 0.16 16 31 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.10 0.89 6.11 -51.93 -0.32 0.57 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.88 7.20 -51.93 -0.37 0.50 16 36 H 0.06 0.62 5.64 -51.93 -0.29 0.33 16 37 H 0.09 1.01 8.07 -51.93 -0.42 0.59 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -30.02 309.94 -7.60 -37.62 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -4.82 Total: 16.27 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -1.77 Total: 9.23 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.84 Total: -54.39 kcal Atomic # 8 Polarization: -28.52 SS G_CDS: 0.17 Total: -28.35 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -30.02 -7.60 -37.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044678998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.389 kcal (2) G-P(sol) polarization free energy of solvation -30.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds