Wall clock time and date at job start Mon Mar 30 2020 05:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86806 * 120.00083 * 2 1 4 4 H 1.48499 * 109.46939 * 270.00235 * 3 2 1 5 5 H 1.48499 * 109.46890 * 29.99823 * 3 2 1 6 6 H 1.48502 * 109.47021 * 150.00285 * 3 2 1 7 7 C 1.39578 * 120.00213 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00479 * 179.97438 * 7 2 1 9 9 N 1.36126 * 119.99918 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00262 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00032 * 359.97438 * 10 9 7 12 12 C 1.48831 * 120.00522 * 179.97438 * 10 9 7 13 13 O 1.21446 * 119.99501 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00522 * 180.02562 * 12 10 9 15 15 C 1.46497 * 119.99973 * 180.02562 * 14 12 10 16 16 H 1.08998 * 110.64436 * 323.29956 * 15 14 12 17 17 C 1.54594 * 110.72610 * 86.45328 * 15 14 12 18 18 C 1.53991 * 105.14285 * 140.31217 * 17 15 14 19 19 N 1.47905 * 107.22505 * 1.12969 * 18 17 15 20 20 C 1.46897 * 111.00050 * 214.25344 * 19 18 17 21 21 C 1.53002 * 117.49753 * 128.49390 * 20 19 18 22 22 C 1.53000 * 60.00246 * 252.51057 * 21 20 19 23 23 C 1.48813 * 105.67450 * 334.90354 * 19 18 17 24 24 H 0.97002 * 119.99751 * 359.97438 * 1 2 3 25 25 H 0.96998 * 119.99966 * 359.97438 * 9 7 2 26 26 H 0.96998 * 119.99772 * 359.97438 * 14 12 10 27 27 H 1.09005 * 110.30718 * 21.40022 * 17 15 14 28 28 H 1.09001 * 110.39460 * 259.27402 * 17 15 14 29 29 H 1.09002 * 109.91707 * 120.58029 * 18 17 15 30 30 H 1.09002 * 109.91668 * 241.67819 * 18 17 15 31 31 H 1.08999 * 115.54947 * 274.20313 * 20 19 18 32 32 H 1.08995 * 117.49856 * 359.97438 * 21 20 19 33 33 H 1.09005 * 117.49905 * 145.02536 * 21 20 19 34 34 H 1.08996 * 117.50122 * 252.51474 * 22 21 20 35 35 H 1.09001 * 117.50187 * 107.49067 * 22 21 20 36 36 H 1.08998 * 110.51915 * 280.54171 * 23 19 18 37 37 H 1.09004 * 110.69711 * 157.49494 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4416 2.6527 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 3.0880 -1.2088 -0.0010 9 7 1.3275 -2.3877 -0.0016 10 6 2.0013 -3.5548 -0.0016 11 8 3.2163 -3.5549 -0.0011 12 6 1.2572 -4.8438 -0.0022 13 8 0.0428 -4.8438 -0.0022 14 7 1.9311 -6.0110 -0.0016 15 6 1.1986 -7.2797 -0.0028 16 1 0.2975 -7.2037 0.6058 17 6 0.8492 -7.7084 -1.4464 18 6 1.0651 -9.2328 -1.4767 19 7 1.4843 -9.6429 -0.1188 20 6 2.4391 -10.7577 -0.1768 21 6 3.7491 -10.6068 0.5991 22 6 3.7513 -10.5255 -0.9287 23 6 2.1034 -8.4356 0.4925 24 1 -0.4850 0.8401 0.0004 25 1 0.3575 -2.3877 -0.0016 26 1 2.9011 -6.0110 -0.0013 27 1 1.5136 -7.2181 -2.1580 28 1 -0.1898 -7.4689 -1.6729 29 1 0.1354 -9.7343 -1.7456 30 1 1.8438 -9.4833 -2.1972 31 1 1.9974 -11.7527 -0.2307 32 1 3.9026 -9.6803 1.1523 33 1 4.1695 -11.5028 1.0560 34 1 4.1730 -11.3680 -1.4769 35 1 3.9061 -9.5457 -1.3804 36 1 3.1243 -8.3062 0.1331 37 1 2.0829 -8.5012 1.5804 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044678998.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:30:06 Heat of formation + Delta-G solvation = -56.604314 kcal Electronic energy + Delta-G solvation = -20101.824015 eV Core-core repulsion = 16879.125444 eV Total energy + Delta-G solvation = -3222.698570 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.57097 -40.59551 -39.09734 -37.11644 -36.31007 -34.60959 -33.43920 -30.50178 -29.79284 -27.79863 -25.11493 -23.84587 -23.30932 -21.75260 -21.42186 -20.67358 -20.33172 -18.91349 -18.08406 -17.51285 -16.94538 -16.59824 -16.42731 -16.00842 -15.70037 -15.51243 -14.99746 -14.66313 -14.51592 -13.87828 -13.68136 -13.57794 -13.11903 -12.97877 -12.87456 -12.60639 -12.59069 -12.38808 -12.20747 -12.10636 -11.87445 -11.67455 -11.46562 -11.08978 -10.30589 -10.28066 -10.23691 -9.42468 -8.67099 -6.12176 0.57386 1.40675 1.46848 1.55154 1.73101 2.27401 2.35064 2.71543 2.97349 3.13983 3.27960 3.42999 3.65450 3.87895 3.93948 3.98947 4.04902 4.07384 4.18787 4.28332 4.57612 4.73316 4.74328 4.84917 4.94016 4.97657 5.05281 5.16019 5.18636 5.24203 5.28854 5.66058 5.72541 5.97953 6.13919 6.36195 6.79338 6.99256 7.26325 7.78196 8.48664 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.045339 B = 0.003562 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.427955 B = 7859.348226 C = 8221.150897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.004 4.004 3 Si 1.010 2.990 4 H -0.264 1.264 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.346 4.346 8 H 0.100 0.900 9 N -0.510 5.510 10 C 0.389 3.611 11 O -0.617 6.617 12 C 0.523 3.477 13 O -0.563 6.563 14 N -0.687 5.687 15 C 0.137 3.863 16 H 0.088 0.912 17 C -0.143 4.143 18 C 0.045 3.955 19 N -0.490 5.490 20 C 0.006 3.994 21 C -0.182 4.182 22 C -0.213 4.213 23 C 0.035 3.965 24 H 0.289 0.711 25 H 0.401 0.599 26 H 0.415 0.585 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.140 0.860 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.287 -18.636 -1.397 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.831 3.169 4 H -0.189 1.189 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.476 4.476 8 H 0.117 0.883 9 N -0.143 5.143 10 C 0.174 3.826 11 O -0.507 6.507 12 C 0.306 3.694 13 O -0.441 6.441 14 N -0.339 5.339 15 C 0.032 3.968 16 H 0.106 0.894 17 C -0.182 4.182 18 C -0.082 4.082 19 N -0.213 5.213 20 C -0.103 4.103 21 C -0.219 4.219 22 C -0.251 4.251 23 C -0.093 4.093 24 H 0.099 0.901 25 H 0.235 0.765 26 H 0.252 0.748 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.158 0.842 32 H 0.114 0.886 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.569 -18.712 -1.085 19.080 hybrid contribution 0.736 1.157 -0.501 1.460 sum 4.305 -17.555 -1.586 18.145 Atomic orbital electron populations 1.69551 1.07848 1.30864 1.45005 1.26552 0.96502 1.03507 0.94321 0.84690 0.78018 0.74978 0.79207 1.18937 1.19121 1.18729 1.19992 0.93718 0.83054 1.50803 0.88264 1.41659 1.10251 1.04801 1.57605 1.19585 0.87862 0.85199 0.89999 1.90545 1.13766 1.87264 1.59113 1.20064 0.87015 0.85850 0.76493 1.90688 1.14556 1.88227 1.50648 1.45553 1.11192 1.04033 1.73168 1.21954 0.95820 0.81478 0.97533 0.89391 1.22840 1.02802 0.96356 0.96250 1.22849 1.02064 0.93288 0.90047 1.64833 1.34521 1.04569 1.17370 1.23135 0.85522 0.96473 1.05198 1.23404 0.99431 1.04601 0.94467 1.23442 1.02977 1.03573 0.95155 1.23502 0.96473 0.88163 1.01200 0.90057 0.76469 0.74751 0.91253 0.90931 0.88961 0.91919 0.84233 0.88567 0.86677 0.86999 0.89732 0.91571 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.08 13.03 21.76 0.28 -47.79 16 2 C 0.00 -0.23 5.51 85.14 0.47 0.24 16 3 Si 1.01 40.58 29.56 68.60 2.03 42.61 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.35 -19.44 9.67 84.35 0.82 -18.63 16 8 H 0.10 5.72 7.15 -2.91 -0.02 5.70 16 9 N -0.51 -27.98 5.25 -308.88 -1.62 -29.60 16 10 C 0.39 19.89 7.82 87.08 0.68 20.58 16 11 O -0.62 -33.33 16.03 -3.72 -0.06 -33.39 16 12 C 0.52 22.73 7.86 87.08 0.68 23.42 16 13 O -0.56 -26.52 16.19 -3.55 -0.06 -26.58 16 14 N -0.69 -22.89 5.14 -438.77 -2.25 -25.14 16 15 C 0.14 3.75 3.35 46.20 0.15 3.91 16 16 H 0.09 2.73 7.69 -2.39 -0.02 2.71 16 17 C -0.14 -3.53 6.67 31.47 0.21 -3.32 16 18 C 0.04 0.86 6.58 86.44 0.57 1.43 16 19 N -0.49 -9.52 5.55 -857.07 -4.75 -14.28 16 20 C 0.01 0.09 6.33 44.92 0.28 0.37 16 21 C -0.18 -2.50 9.57 30.59 0.29 -2.21 16 22 C -0.21 -2.97 8.86 30.60 0.27 -2.69 16 23 C 0.03 0.73 4.69 86.59 0.41 1.14 16 24 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 25 H 0.40 22.28 7.35 -92.71 -0.68 21.60 16 26 H 0.42 12.90 7.98 -92.71 -0.74 12.16 16 27 H 0.07 1.77 8.05 -2.38 -0.02 1.75 16 28 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.08 6.72 -2.39 -0.02 1.06 16 31 H 0.14 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 1.46 6.11 -2.39 -0.01 1.44 16 33 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.38 7.20 -2.39 -0.02 1.36 16 36 H 0.07 1.29 5.64 -2.39 -0.01 1.28 16 37 H 0.10 1.98 8.07 -2.38 -0.02 1.96 16 Total: -1.00 -64.54 309.94 -1.90 -66.45 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: -0.31 Total: 43.51 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: 4.84 Total: 24.23 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -8.34 Total: -116.81 kcal Atomic # 8 Polarization: -59.86 SS G_CDS: -0.12 Total: -59.98 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 2.03 Total: 42.61 kcal Total: -64.54 -1.90 -66.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044678998.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.841 kcal (2) G-P(sol) polarization free energy of solvation -64.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds