Wall clock time and date at job start Mon Mar 30 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99886 * 2 1 4 4 C 1.50699 * 109.47138 * 269.99831 * 3 2 1 5 5 H 1.07997 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99804 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00319 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99891 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46899 * 60.00064 * 8 6 4 10 10 H 1.48498 * 109.47072 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47124 * 300.00194 * 8 6 4 12 12 C 1.38612 * 120.00372 * 179.97438 * 2 1 3 13 13 N 1.29689 * 124.94822 * 0.02562 * 12 2 1 14 14 C 1.32112 * 116.86762 * 180.02562 * 13 12 2 15 15 C 1.50698 * 122.71244 * 180.02562 * 14 13 12 16 16 N 1.46906 * 109.47089 * 274.99893 * 15 14 13 17 17 C 1.46894 * 111.00113 * 179.97438 * 16 15 14 18 18 C 1.53005 * 117.49777 * 223.61835 * 17 16 15 19 19 C 1.53005 * 60.00014 * 252.51138 * 18 17 16 20 20 C 1.33334 * 114.57962 * 359.97438 * 14 13 12 21 21 S 1.70962 * 124.94915 * 180.02562 * 12 2 1 22 22 H 1.08998 * 109.47072 * 269.99586 * 1 2 3 23 23 H 1.09001 * 109.47123 * 30.00568 * 1 2 3 24 24 H 1.09003 * 109.46447 * 149.99832 * 1 2 3 25 25 H 1.09006 * 109.46883 * 29.99844 * 3 2 1 26 26 H 1.08998 * 109.46834 * 149.99260 * 3 2 1 27 27 H 0.96999 * 120.00524 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47509 * 34.99726 * 15 14 13 29 29 H 1.08993 * 109.47427 * 155.00177 * 15 14 13 30 30 H 1.00897 * 110.99801 * 56.03886 * 16 15 14 31 31 H 1.08995 * 115.55220 * 9.33037 * 17 16 15 32 32 H 1.09000 * 117.49651 * 0.02562 * 18 17 16 33 33 H 1.09001 * 117.49448 * 145.02133 * 18 17 16 34 34 H 1.08993 * 117.49833 * 252.50898 * 19 18 17 35 35 H 1.09003 * 117.51454 * 107.48416 * 19 18 17 36 36 H 1.08000 * 125.95087 * 179.74040 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6182 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.1390 3.5948 -4.1335 10 1 4.1793 4.7036 -3.4338 11 1 4.2395 2.3831 -4.1343 12 6 2.1582 -1.2004 0.0005 13 7 1.6091 -2.3753 0.0006 14 6 2.4240 -3.4152 0.0017 15 6 1.9283 -4.8383 0.0013 16 7 1.6517 -5.2608 1.3808 17 6 1.1649 -6.6462 1.4195 18 6 -0.0230 -6.9523 2.3339 19 6 1.3787 -7.4343 2.7134 20 6 3.7205 -3.1038 0.0020 21 16 3.8614 -1.3478 0.0012 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5139 25 1 1.6083 2.0284 0.5138 26 1 3.1498 1.1384 0.5139 27 1 4.0301 4.4441 -0.8503 28 1 1.0145 -4.9047 -0.5891 29 1 2.6888 -5.4878 -0.4320 30 1 0.9972 -4.6353 1.8262 31 1 1.2312 -7.1942 0.4797 32 1 -0.4435 -6.1256 2.9065 33 1 -0.7385 -7.7018 1.9956 34 1 1.5852 -8.5008 2.6248 35 1 1.8809 -6.9248 3.5359 36 1 4.5412 -3.8058 0.0068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070681666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:04 Heat of formation + Delta-G solvation = 77.598656 kcal Electronic energy + Delta-G solvation = -17485.112555 eV Core-core repulsion = 14710.986333 eV Total energy + Delta-G solvation = -2774.126222 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.24998 -37.80818 -36.14680 -33.38136 -32.61665 -29.26253 -27.95613 -26.00787 -25.40138 -23.29032 -22.49372 -21.30701 -20.86429 -18.86734 -17.30866 -16.62236 -16.14326 -15.82639 -15.34308 -14.82002 -14.49200 -14.04193 -13.72225 -13.38743 -13.18737 -12.54267 -12.44307 -12.21714 -11.90954 -11.71108 -11.64396 -11.40028 -11.11371 -11.00219 -10.80516 -10.59722 -10.31534 -10.21919 -9.96221 -9.11423 -8.88550 -8.61581 -8.46511 -8.22163 -6.77736 -6.17245 -4.29640 1.73631 1.99300 2.62235 3.23951 3.28446 3.31195 3.41383 3.72499 3.78980 4.25128 4.32261 4.77427 4.83481 4.96205 5.09401 5.13268 5.38927 5.49339 5.50792 5.66832 5.80906 5.85452 5.93576 6.01595 6.06584 6.24961 6.34255 6.59238 6.90095 7.01281 7.05586 7.29802 7.56827 7.78391 7.97444 8.02513 8.61255 8.80176 9.38055 10.85405 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.003998 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.212281 B = 7001.354831 C = 7257.211470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.563 5.563 3 C 0.249 3.751 4 C -0.541 4.541 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.891 5.891 8 Si 0.900 3.100 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.340 3.660 13 N -0.581 5.581 14 C 0.110 3.890 15 C 0.143 3.857 16 N -0.652 5.652 17 C 0.025 3.975 18 C -0.209 4.209 19 C -0.173 4.173 20 C -0.320 4.320 21 S 0.114 5.886 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.267 0.733 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.349 0.651 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.665 -15.544 3.541 16.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.278 5.278 3 C 0.130 3.870 4 C -0.580 4.580 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.529 5.529 8 Si 0.727 3.273 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.199 1.199 12 C -0.031 4.031 13 N -0.310 5.310 14 C -0.023 4.023 15 C 0.012 3.988 16 N -0.283 5.283 17 C -0.086 4.086 18 C -0.248 4.248 19 C -0.211 4.211 20 C -0.464 4.464 21 S 0.365 5.635 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.102 0.898 30 H 0.169 0.831 31 H 0.126 0.874 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.729 -14.580 3.706 15.289 hybrid contribution -1.010 -0.279 -1.245 1.627 sum -3.739 -14.859 2.461 15.518 Atomic orbital electron populations 1.21483 0.79509 1.02464 1.00276 1.46681 1.05398 1.02040 1.73718 1.19527 0.91800 0.77811 0.97907 1.21437 1.37488 1.07008 0.92024 0.91980 1.24935 0.94988 0.96022 0.97725 1.69907 1.37668 1.14327 1.31005 0.86522 0.78566 0.77970 0.84270 1.20088 1.21029 1.19910 1.23514 0.93484 0.89784 0.96280 1.66236 1.37410 0.96295 1.31022 1.19355 0.88694 0.93859 1.00429 1.20338 0.99671 0.89783 0.89048 1.60253 1.49396 1.01243 1.17409 1.22405 0.99852 0.91404 0.94933 1.23421 0.91878 1.04235 1.05228 1.23109 0.98543 0.99731 0.99741 1.26133 1.00314 0.97914 1.22027 1.84328 1.04584 1.01047 1.73569 0.94130 0.91122 0.91668 0.93739 0.94532 0.92312 0.93694 0.89784 0.83123 0.87370 0.88728 0.88930 0.88906 0.88452 0.82128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.98 10.56 59.85 0.63 2.61 16 2 N -0.56 -12.23 2.96 -185.30 -0.55 -12.78 16 3 C 0.25 6.10 5.13 -5.19 -0.03 6.07 16 4 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -24.85 13.29 55.43 0.74 -24.11 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 12 C 0.34 7.20 7.74 -87.68 -0.68 6.52 16 13 N -0.58 -11.45 9.80 -11.36 -0.11 -11.56 16 14 C 0.11 1.90 6.25 -84.19 -0.53 1.37 16 15 C 0.14 1.95 5.97 -4.97 -0.03 1.92 16 16 N -0.65 -8.36 6.77 -107.99 -0.73 -9.09 16 17 C 0.03 0.26 6.31 -67.71 -0.43 -0.17 16 18 C -0.21 -1.90 10.23 -26.73 -0.27 -2.18 16 19 C -0.17 -1.60 10.46 -26.73 -0.28 -1.88 16 20 C -0.32 -5.50 11.08 29.02 0.32 -5.18 16 21 S 0.11 2.26 21.68 -107.50 -2.33 -0.07 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 24 H 0.06 1.16 7.62 -51.93 -0.40 0.76 16 25 H 0.04 1.12 8.07 -51.93 -0.42 0.70 16 26 H 0.04 0.95 7.04 -51.93 -0.37 0.58 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.35 4.74 8.51 -39.29 -0.33 4.40 16 31 H 0.11 1.00 7.90 -51.93 -0.41 0.59 16 32 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 322.23 15.07 4.86 4.86 Total: -1.00 -28.20 322.23 -10.13 -38.33 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -5.27 Total: 2.54 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -1.71 Total: -3.93 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.65 Total: -57.54 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.33 Total: -0.07 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.20 -10.13 -38.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070681666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.927 kcal (2) G-P(sol) polarization free energy of solvation -28.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds