Wall clock time and date at job start Mon Mar 30 2020 04:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 119.99886 * 2 1 4 4 C 1.50699 * 109.47138 * 269.99831 * 3 2 1 5 5 H 1.07997 * 119.99904 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99804 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00319 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99891 * 180.02562 * 6 4 3 9 9 H 1.48495 * 109.46899 * 60.00064 * 8 6 4 10 10 H 1.48498 * 109.47072 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47124 * 300.00194 * 8 6 4 12 12 C 1.38612 * 120.00372 * 179.97438 * 2 1 3 13 13 N 1.29689 * 124.94822 * 0.02562 * 12 2 1 14 14 C 1.32112 * 116.86762 * 180.02562 * 13 12 2 15 15 C 1.50698 * 122.71244 * 180.02562 * 14 13 12 16 16 N 1.46906 * 109.47089 * 274.99893 * 15 14 13 17 17 C 1.46894 * 111.00113 * 179.97438 * 16 15 14 18 18 C 1.53005 * 117.49777 * 223.61835 * 17 16 15 19 19 C 1.53005 * 60.00014 * 252.51138 * 18 17 16 20 20 C 1.33334 * 114.57962 * 359.97438 * 14 13 12 21 21 S 1.70962 * 124.94915 * 180.02562 * 12 2 1 22 22 H 1.08998 * 109.47072 * 269.99586 * 1 2 3 23 23 H 1.09001 * 109.47123 * 30.00568 * 1 2 3 24 24 H 1.09003 * 109.46447 * 149.99832 * 1 2 3 25 25 H 1.09006 * 109.46883 * 29.99844 * 3 2 1 26 26 H 1.08998 * 109.46834 * 149.99260 * 3 2 1 27 27 H 0.96999 * 120.00524 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47509 * 34.99726 * 15 14 13 29 29 H 1.08993 * 109.47427 * 155.00177 * 15 14 13 30 30 H 1.00897 * 110.99801 * 56.03886 * 16 15 14 31 31 H 1.08995 * 115.55220 * 9.33037 * 17 16 15 32 32 H 1.09000 * 117.49651 * 0.02562 * 18 17 16 33 33 H 1.09001 * 117.49448 * 145.02133 * 18 17 16 34 34 H 1.08993 * 117.49833 * 252.50898 * 19 18 17 35 35 H 1.09003 * 117.51454 * 107.48416 * 19 18 17 36 36 H 1.08000 * 125.95087 * 179.74040 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0975 1.0962 -2.2417 6 6 3.1260 2.8780 -1.6727 7 7 3.5533 3.6182 -0.6731 8 14 3.4368 3.4176 -3.4339 9 1 2.1390 3.5948 -4.1335 10 1 4.1793 4.7036 -3.4338 11 1 4.2395 2.3831 -4.1343 12 6 2.1582 -1.2004 0.0005 13 7 1.6091 -2.3753 0.0006 14 6 2.4240 -3.4152 0.0017 15 6 1.9283 -4.8383 0.0013 16 7 1.6517 -5.2608 1.3808 17 6 1.1649 -6.6462 1.4195 18 6 -0.0230 -6.9523 2.3339 19 6 1.3787 -7.4343 2.7134 20 6 3.7205 -3.1038 0.0020 21 16 3.8614 -1.3478 0.0012 22 1 -0.3633 -0.0001 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5139 25 1 1.6083 2.0284 0.5138 26 1 3.1498 1.1384 0.5139 27 1 4.0301 4.4441 -0.8503 28 1 1.0145 -4.9047 -0.5891 29 1 2.6888 -5.4878 -0.4320 30 1 0.9972 -4.6353 1.8262 31 1 1.2312 -7.1942 0.4797 32 1 -0.4435 -6.1256 2.9065 33 1 -0.7385 -7.7018 1.9956 34 1 1.5852 -8.5008 2.6248 35 1 1.8809 -6.9248 3.5359 36 1 4.5412 -3.8058 0.0068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070681666.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:04 Heat of formation + Delta-G solvation = 60.926991 kcal Electronic energy + Delta-G solvation = -17485.835492 eV Core-core repulsion = 14710.986333 eV Total energy + Delta-G solvation = -2774.849159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.68814 -38.72577 -37.72061 -34.89205 -34.15658 -30.71482 -29.71774 -27.62348 -26.64483 -25.08954 -23.20042 -22.47439 -22.07897 -20.32327 -18.89686 -18.59900 -17.22667 -17.00620 -16.67436 -16.46990 -15.98449 -15.48192 -15.11106 -14.58967 -14.41326 -14.05311 -13.87239 -13.62846 -13.54130 -13.12865 -12.94307 -12.76157 -12.63133 -12.35050 -12.20892 -12.11874 -11.86283 -11.61247 -11.23041 -10.72120 -10.67332 -10.41950 -10.00619 -9.18032 -8.49338 -8.09358 -6.41326 0.24112 0.45839 1.15530 1.40260 1.41598 1.49671 2.00966 2.15816 2.40544 2.94704 3.04707 3.26790 3.69347 4.03324 4.09089 4.20389 4.31343 4.40329 4.51320 4.63161 4.66063 4.78275 4.82535 4.83861 4.88104 5.01415 5.05954 5.09895 5.31297 5.37492 5.58996 5.93421 5.99505 6.07970 6.28481 6.39644 6.67542 7.12554 7.31292 8.80436 Molecular weight = 267.11amu Principal moments of inertia in cm(-1) A = 0.038127 B = 0.003998 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.212281 B = 7001.354831 C = 7257.211470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.577 5.577 3 C 0.265 3.735 4 C -0.550 4.550 5 H 0.052 0.948 6 C 0.022 3.978 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.272 1.272 12 C 0.319 3.681 13 N -0.580 5.580 14 C 0.098 3.902 15 C 0.151 3.849 16 N -0.660 5.660 17 C 0.012 3.988 18 C -0.203 4.203 19 C -0.169 4.169 20 C -0.302 4.302 21 S 0.078 5.922 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.031 0.969 26 H 0.019 0.981 27 H 0.270 0.730 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.341 0.659 31 H 0.122 0.878 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.844 -17.446 2.867 18.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.294 5.294 3 C 0.144 3.856 4 C -0.588 4.588 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.197 1.197 12 C -0.052 4.052 13 N -0.309 5.309 14 C -0.034 4.034 15 C 0.019 3.981 16 N -0.290 5.290 17 C -0.098 4.098 18 C -0.242 4.242 19 C -0.207 4.207 20 C -0.445 4.445 21 S 0.328 5.672 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.037 0.963 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.124 0.876 30 H 0.160 0.840 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -2.924 -16.534 3.039 17.063 hybrid contribution -0.954 0.189 -0.978 1.379 sum -3.878 -16.345 2.061 16.925 Atomic orbital electron populations 1.21559 0.77810 1.02631 1.01354 1.46541 1.06376 1.01456 1.74984 1.19091 0.91057 0.78847 0.96555 1.21608 1.37487 1.07083 0.92667 0.92979 1.25693 0.94683 0.96037 1.01473 1.70000 1.38290 1.14746 1.32875 0.85576 0.78628 0.77666 0.79684 1.19385 1.20297 1.19731 1.23679 0.93803 0.90061 0.97614 1.66279 1.38054 0.96336 1.30237 1.19956 0.88665 0.94937 0.99846 1.20368 1.00260 0.87661 0.89774 1.60271 1.49722 1.02372 1.16672 1.22535 1.01018 0.90202 0.96066 1.23459 0.92019 1.04302 1.04420 1.23158 0.98440 1.00492 0.98644 1.26435 1.01234 0.96232 1.20575 1.84417 1.04850 1.04043 1.73857 0.92561 0.91120 0.91221 0.95088 0.96334 0.92083 0.93613 0.87644 0.84025 0.85983 0.89386 0.87353 0.87104 0.89496 0.79173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.05 10.56 127.77 1.35 5.40 16 2 N -0.58 -25.40 2.96 -740.16 -2.19 -27.60 16 3 C 0.27 13.34 5.13 85.63 0.44 13.78 16 4 C -0.55 -29.65 9.39 25.60 0.24 -29.41 16 5 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 6 C 0.02 1.17 5.46 84.65 0.46 1.64 16 7 N -0.92 -51.88 13.29 21.45 0.28 -51.59 16 8 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 9 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 12 C 0.32 13.54 7.74 179.32 1.39 14.92 16 13 N -0.58 -22.44 9.80 -189.86 -1.86 -24.31 16 14 C 0.10 3.22 6.25 41.41 0.26 3.48 16 15 C 0.15 3.75 5.97 85.56 0.51 4.26 16 16 N -0.66 -15.63 6.77 -495.58 -3.35 -18.99 16 17 C 0.01 0.22 6.31 44.92 0.28 0.50 16 18 C -0.20 -3.26 10.23 30.60 0.31 -2.94 16 19 C -0.17 -2.74 10.46 30.60 0.32 -2.42 16 20 C -0.30 -9.85 11.08 66.71 0.74 -9.12 16 21 S 0.08 3.11 21.68 -56.49 -1.22 1.89 16 22 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 24 H 0.07 2.44 7.62 -2.39 -0.02 2.42 16 25 H 0.03 1.62 8.07 -2.38 -0.02 1.60 16 26 H 0.02 1.00 7.04 -2.39 -0.02 0.98 16 27 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 30 H 0.34 8.86 8.51 -89.70 -0.76 8.09 16 31 H 0.12 1.88 7.90 -2.39 -0.02 1.86 16 32 H 0.09 1.53 8.09 -2.39 -0.02 1.51 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.19 4.97 8.06 -2.91 -0.02 4.95 16 Total: -1.00 -59.70 322.23 0.30 -59.40 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.31 Total: 16.48 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: 6.30 Total: 0.09 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -7.12 Total: -122.48 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.22 Total: 1.89 kcal Total: -59.70 0.30 -59.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070681666.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.332 kcal (2) G-P(sol) polarization free energy of solvation -59.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds