Wall clock time and date at job start Mon Mar 30 2020 04:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.47524 * 120.00173 * 2 1 4 4 O 1.21452 * 120.00424 * 185.45091 * 3 2 1 5 5 O 1.34759 * 119.99603 * 5.45097 * 3 2 1 6 6 C 1.34252 * 119.99785 * 180.27263 * 2 1 3 7 7 C 1.50701 * 120.00421 * 355.51918 * 6 2 1 8 8 C 1.47686 * 119.99727 * 175.51915 * 6 2 1 9 9 O 1.21529 * 120.00150 * 256.27284 * 8 6 2 10 10 N 1.34775 * 119.99916 * 76.27929 * 8 6 2 11 11 C 1.46498 * 120.00242 * 5.91189 * 10 8 6 12 12 C 1.50701 * 109.47116 * 89.99814 * 11 10 8 13 13 H 1.07998 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99658 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00008 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 119.99938 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47253 * 90.00231 * 16 14 12 18 18 H 1.48498 * 109.47100 * 210.00833 * 16 14 12 19 19 H 1.48508 * 109.47051 * 330.00530 * 16 14 12 20 20 C 1.46504 * 119.99851 * 185.90684 * 10 8 6 21 21 C 1.52999 * 117.49736 * 16.79837 * 20 10 8 22 22 C 1.52992 * 117.50052 * 308.17470 * 20 10 8 23 23 H 1.09007 * 109.47610 * 269.72499 * 1 2 3 24 24 H 1.08994 * 109.47239 * 29.72664 * 1 2 3 25 25 H 1.09000 * 109.47515 * 149.72705 * 1 2 3 26 26 H 0.96703 * 116.99897 * 180.02562 * 5 3 2 27 27 H 1.09004 * 109.47028 * 94.85346 * 7 6 2 28 28 H 1.09003 * 109.47256 * 214.85721 * 7 6 2 29 29 H 1.08997 * 109.46852 * 334.85572 * 7 6 2 30 30 H 1.09003 * 109.47130 * 210.00082 * 11 10 8 31 31 H 1.09002 * 109.47102 * 329.99811 * 11 10 8 32 32 H 0.96998 * 119.99821 * 179.97438 * 15 14 12 33 33 H 1.09004 * 115.54994 * 162.50180 * 20 10 8 34 34 H 1.08997 * 117.50354 * 359.97438 * 21 20 10 35 35 H 1.09004 * 117.50050 * 145.01488 * 21 20 10 36 36 H 1.09004 * 117.49746 * 214.97522 * 22 20 10 37 37 H 1.09003 * 117.50248 * 359.97390 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.2776 0.0000 4 8 3.4550 1.2800 -0.0999 5 8 1.5754 2.4420 0.1109 6 6 2.1782 -1.1627 -0.0055 7 6 1.4282 -2.4663 0.0902 8 6 3.6517 -1.1641 -0.1055 9 8 4.1891 -1.4494 -1.1575 10 7 4.4003 -0.8492 0.9701 11 6 3.7604 -0.6322 2.2699 12 6 3.6871 -1.9383 3.0181 13 1 4.0785 -2.8398 2.5704 14 6 3.1214 -1.9821 4.2747 15 7 2.6453 -0.8841 4.8201 16 14 3.0311 -3.6009 5.2025 17 1 4.2585 -3.7715 6.0207 18 1 1.8408 -3.5969 6.0903 19 1 2.9223 -4.7212 4.2337 20 6 5.8541 -0.7240 0.8393 21 6 6.4258 -0.5691 -0.5714 22 6 6.6074 -1.8852 0.1874 23 1 -0.3634 -0.0049 1.0277 24 1 -0.3633 0.8924 -0.5095 25 1 -0.3634 -0.8875 -0.5181 26 1 2.1018 3.2531 0.1057 27 1 1.2533 -2.8592 -0.9114 28 1 2.0163 -3.1826 0.6640 29 1 0.4725 -2.2999 0.5873 30 1 4.3442 0.0850 2.8471 31 1 2.7535 -0.2430 2.1187 32 1 2.2470 -0.9150 5.7040 33 1 6.3545 -0.1898 1.6470 34 1 5.7203 -0.5606 -1.4022 35 1 7.3024 0.0674 -0.6921 36 1 7.6035 -2.1146 0.5658 37 1 6.0214 -2.7425 -0.1440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071165582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:23 Heat of formation + Delta-G solvation = -90.117936 kcal Electronic energy + Delta-G solvation = -21722.472961 eV Core-core repulsion = 18466.028380 eV Total energy + Delta-G solvation = -3256.444581 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.84076 -40.64794 -37.70532 -37.07560 -36.60794 -35.54273 -33.97156 -30.63113 -29.07446 -27.73606 -25.17453 -24.62033 -23.64055 -23.24697 -21.37221 -19.30662 -18.82627 -18.68260 -18.02035 -17.25383 -16.69007 -16.53256 -16.23137 -16.07900 -15.20251 -14.94113 -14.46668 -14.45243 -13.99191 -13.89050 -13.52710 -13.47989 -13.45631 -13.32938 -12.91985 -12.72218 -12.65522 -12.56170 -12.39864 -12.14027 -12.05093 -11.52500 -11.45754 -11.21691 -10.65588 -10.41404 -10.03213 -9.15515 -8.19478 -6.36148 -0.12732 1.41649 1.43416 1.53212 1.64048 1.81530 2.07915 2.28849 2.43762 3.08223 3.11531 3.46741 3.96933 4.02356 4.05897 4.16836 4.24215 4.32008 4.67988 4.70872 4.77281 4.81659 4.85694 4.89528 4.90461 5.06370 5.09780 5.13606 5.19472 5.40548 5.46463 5.57947 5.67062 5.94356 6.03409 6.54665 6.79358 6.95262 7.24672 7.37978 8.85489 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.014653 B = 0.009233 C = 0.007209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1910.420713 B = 3031.960945 C = 3883.168967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.149 4.149 3 C 0.505 3.495 4 O -0.528 6.528 5 O -0.499 6.499 6 C -0.059 4.059 7 C -0.107 4.107 8 C 0.557 3.443 9 O -0.580 6.580 10 N -0.551 5.551 11 C 0.262 3.738 12 C -0.543 4.543 13 H 0.052 0.948 14 C 0.025 3.975 15 N -0.919 5.919 16 Si 0.958 3.042 17 H -0.278 1.278 18 H -0.277 1.277 19 H -0.266 1.266 20 C 0.067 3.933 21 C -0.182 4.182 22 C -0.178 4.178 23 H 0.080 0.920 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.427 0.573 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.005 0.995 31 H 0.027 0.973 32 H 0.269 0.731 33 H 0.123 0.877 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 1.968 -7.317 8.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.151 4.151 3 C 0.351 3.649 4 O -0.419 6.419 5 O -0.312 6.312 6 C -0.062 4.062 7 C -0.163 4.163 8 C 0.347 3.653 9 O -0.465 6.465 10 N -0.277 5.277 11 C 0.141 3.859 12 C -0.582 4.582 13 H 0.071 0.929 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.783 3.217 17 H -0.204 1.204 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.038 4.038 21 C -0.219 4.219 22 C -0.217 4.217 23 H 0.099 0.901 24 H 0.106 0.894 25 H 0.115 0.885 26 H 0.288 0.712 27 H 0.124 0.876 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.023 0.977 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.141 0.859 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.011 1.583 -7.663 8.793 hybrid contribution 0.667 0.135 0.913 1.139 sum -3.344 1.718 -6.749 7.726 Atomic orbital electron populations 1.20814 0.86107 1.04949 1.03783 1.21264 0.98986 0.87719 1.07170 1.21486 0.85503 0.85820 0.72101 1.90950 1.16404 1.87858 1.46731 1.84518 1.44840 1.16936 1.84941 1.22438 0.93064 0.97914 0.92803 1.20933 1.00416 0.90999 1.03991 1.18668 0.87916 0.75595 0.83148 1.90526 1.73254 1.52403 1.30267 1.47289 1.05569 1.65121 1.09718 1.18984 0.92498 0.95981 0.78393 1.21594 1.39999 0.94650 1.01915 0.92927 1.25649 0.94364 0.99814 0.97741 1.70025 1.39876 1.28960 1.16962 0.85549 0.77813 0.79791 0.78522 1.20400 1.20176 1.19084 1.21642 0.80676 1.03662 0.97798 1.23584 1.02648 0.99547 0.96163 1.23154 1.01562 0.92505 1.04450 0.90139 0.89449 0.88498 0.71186 0.87637 0.91646 0.87678 0.97717 0.95544 0.92235 0.85924 0.87433 0.87515 0.86486 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 8.87 71.24 0.63 -1.78 16 2 C -0.15 -5.12 5.16 -18.32 -0.09 -5.21 16 3 C 0.51 18.31 7.52 70.27 0.53 18.84 16 4 O -0.53 -22.76 13.82 19.99 0.28 -22.48 16 5 O -0.50 -13.52 12.77 -56.70 -0.72 -14.24 16 6 C -0.06 -2.24 4.42 -18.28 -0.08 -2.32 16 7 C -0.11 -3.28 9.24 71.24 0.66 -2.62 16 8 C 0.56 25.29 4.65 86.74 0.40 25.69 16 9 O -0.58 -27.83 12.83 -3.81 -0.05 -27.88 16 10 N -0.55 -25.87 1.75 -805.76 -1.41 -27.28 16 11 C 0.26 13.47 4.63 85.63 0.40 13.86 16 12 C -0.54 -28.97 9.39 25.60 0.24 -28.73 16 13 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 14 C 0.02 1.31 5.46 84.66 0.46 1.77 16 15 N -0.92 -50.75 13.29 21.45 0.28 -50.47 16 16 Si 0.96 41.49 29.54 68.60 2.03 43.51 16 17 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 C 0.07 2.86 6.62 44.99 0.30 3.16 16 21 C -0.18 -7.03 9.63 30.59 0.29 -6.73 16 22 C -0.18 -6.77 9.87 30.59 0.30 -6.47 16 23 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 24 H 0.09 1.82 7.76 -2.39 -0.02 1.81 16 25 H 0.10 1.84 6.74 -2.39 -0.02 1.83 16 26 H 0.43 7.75 9.11 -74.06 -0.67 7.07 16 27 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.10 2.66 6.56 -2.39 -0.02 2.64 16 30 H 0.00 0.26 8.03 -2.39 -0.02 0.25 16 31 H 0.03 1.40 5.49 -2.39 -0.01 1.39 16 32 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 33 H 0.12 5.01 8.09 -2.39 -0.02 4.99 16 34 H 0.11 4.79 5.24 -4.42 -0.02 4.77 16 35 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 36 H 0.12 3.66 8.14 -2.38 -0.02 3.65 16 37 H 0.07 3.04 7.56 -2.39 -0.02 3.03 16 Total: -1.00 -69.20 312.17 4.86 -64.34 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.41 Total: 25.05 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 4.04 Total: 9.45 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -1.12 Total: -77.75 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -0.50 Total: -64.61 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -69.20 4.86 -64.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071165582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.773 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds