Wall clock time and date at job start Mon Mar 30 2020 04:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86806 * 119.99722 * 2 1 4 4 H 1.48499 * 109.46906 * 269.99676 * 3 2 1 5 5 H 1.48498 * 109.47298 * 29.99748 * 3 2 1 6 6 H 1.48505 * 109.47050 * 150.00000 * 3 2 1 7 7 C 1.38652 * 120.00345 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99817 * 359.97438 * 7 2 1 9 9 O 1.34831 * 120.00286 * 180.02562 * 7 2 1 10 10 C 1.35746 * 117.00307 * 185.05811 * 9 7 2 11 11 C 1.38904 * 120.06836 * 354.48539 * 10 9 7 12 12 C 1.38077 * 119.93083 * 179.97438 * 11 10 9 13 13 C 1.38319 * 120.06796 * 359.74411 * 12 11 10 14 14 C 1.38275 * 120.14113 * 0.51581 * 13 12 11 15 15 C 1.50698 * 119.96661 * 179.76291 * 14 13 12 16 16 N 1.46903 * 109.47212 * 269.72012 * 15 14 13 17 17 C 1.46897 * 111.00060 * 179.97438 * 16 15 14 18 18 C 1.52999 * 109.47165 * 179.97438 * 17 16 15 19 19 H 1.09009 * 109.46849 * 60.00129 * 18 17 16 20 20 O 1.42896 * 109.47342 * 300.00358 * 18 17 16 21 21 C 1.52998 * 109.47173 * 179.97438 * 18 17 16 22 22 O 1.42902 * 109.47228 * 185.00121 * 21 18 17 23 23 C 1.38121 * 120.06570 * 359.48525 * 14 13 12 24 24 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 25 25 H 1.08005 * 120.03058 * 0.02562 * 11 10 9 26 26 H 1.08006 * 119.96286 * 180.02562 * 12 11 10 27 27 H 1.08005 * 119.93053 * 180.27601 * 13 12 11 28 28 H 1.08997 * 109.47308 * 29.72274 * 15 14 13 29 29 H 1.09003 * 109.47279 * 149.71988 * 15 14 13 30 30 H 1.00896 * 110.99922 * 303.95364 * 16 15 14 31 31 H 1.08998 * 109.47262 * 300.00165 * 17 16 15 32 32 H 1.09001 * 109.47275 * 59.99988 * 17 16 15 33 33 H 0.96701 * 114.00089 * 299.99783 * 20 18 17 34 34 H 1.08997 * 109.47750 * 305.00222 * 21 18 17 35 35 H 1.09007 * 109.47128 * 65.00474 * 21 18 17 36 36 H 0.96702 * 114.00453 * 180.02562 * 22 21 18 37 37 H 1.08004 * 120.03312 * 180.23431 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6528 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2007 0.0011 10 6 3.9736 -2.4055 -0.1051 11 6 3.2235 -3.5745 -0.0926 12 6 3.8533 -4.7984 -0.2013 13 6 5.2293 -4.8609 -0.3278 14 6 5.9793 -3.6993 -0.3351 15 6 7.4787 -3.7722 -0.4678 16 7 8.0849 -3.8570 0.8676 17 6 9.5493 -3.9304 0.7773 18 6 10.1433 -4.0168 2.1846 19 1 9.7650 -4.9085 2.6846 20 8 9.7697 -2.8572 2.9314 21 6 11.6685 -4.0939 2.0906 22 8 12.2168 -4.2915 3.3953 23 6 5.3552 -2.4719 -0.2268 24 1 -0.4850 0.8400 -0.0004 25 1 2.1486 -3.5261 0.0012 26 1 3.2706 -5.7077 -0.1920 27 1 5.7193 -5.8193 -0.4171 28 1 7.7498 -4.6551 -1.0466 29 1 7.8424 -2.8790 -0.9758 30 1 7.7964 -3.0820 1.4456 31 1 9.8343 -4.8146 0.2073 32 1 9.9277 -3.0386 0.2777 33 1 10.0737 -2.0250 2.5440 34 1 11.9513 -4.9273 1.4476 35 1 12.0541 -3.1644 1.6714 36 1 13.1820 -4.3495 3.4117 37 1 5.9412 -1.5647 -0.2364 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090282669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:48 Heat of formation + Delta-G solvation = -102.886029 kcal Electronic energy + Delta-G solvation = -19451.037876 eV Core-core repulsion = 16194.039629 eV Total energy + Delta-G solvation = -3256.998247 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.28369 -38.70830 -37.10473 -36.26511 -34.94291 -32.38007 -31.44460 -29.77516 -29.11699 -26.00610 -25.11731 -23.51869 -21.86886 -21.66582 -20.50518 -17.91096 -17.68019 -17.20925 -16.75048 -16.57844 -15.50717 -15.23126 -14.96963 -14.58812 -14.30937 -13.93149 -13.81175 -13.55047 -13.36669 -13.06841 -12.65046 -12.45496 -12.30858 -11.98424 -11.74796 -11.30211 -11.08485 -10.80728 -10.79554 -10.70357 -10.50571 -10.24888 -10.13326 -9.38568 -8.86691 -8.53925 -8.14196 -7.35957 -6.40274 -4.07302 2.01440 2.29247 3.22226 3.25540 3.40440 3.51838 4.17615 4.24370 4.28857 4.57801 4.69654 4.77933 4.82546 4.88179 4.98474 5.04638 5.11707 5.19579 5.37362 5.42230 5.68018 5.73699 5.82100 5.89414 6.13151 6.25060 6.52608 6.77743 6.90387 7.10197 7.20672 7.24548 7.32421 7.36493 7.44575 7.61472 7.81527 8.05246 8.95138 9.57641 10.67584 Molecular weight = 267.13amu Principal moments of inertia in cm(-1) A = 0.024063 B = 0.003662 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.344133 B = 7643.871510 C = 8469.053498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.219 6.219 10 C 0.159 3.841 11 C -0.217 4.217 12 C -0.078 4.078 13 C -0.180 4.180 14 C -0.051 4.051 15 C 0.107 3.893 16 N -0.678 5.678 17 C 0.030 3.970 18 C 0.108 3.892 19 H 0.114 0.886 20 O -0.548 6.548 21 C 0.045 3.955 22 O -0.563 6.563 23 C -0.184 4.184 24 H 0.279 0.721 25 H 0.132 0.868 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.076 0.924 29 H 0.034 0.966 30 H 0.353 0.647 31 H 0.082 0.918 32 H 0.031 0.969 33 H 0.369 0.631 34 H 0.055 0.945 35 H 0.047 0.953 36 H 0.378 0.622 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.514 -7.202 -0.126 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.125 6.125 10 C 0.107 3.893 11 C -0.236 4.236 12 C -0.097 4.097 13 C -0.199 4.199 14 C -0.052 4.052 15 C -0.022 4.022 16 N -0.311 5.311 17 C -0.100 4.100 18 C 0.048 3.952 19 H 0.132 0.868 20 O -0.352 6.352 21 C -0.033 4.033 22 O -0.368 6.368 23 C -0.204 4.204 24 H 0.089 0.911 25 H 0.150 0.850 26 H 0.129 0.871 27 H 0.126 0.874 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.173 0.827 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.216 0.784 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.224 0.776 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 20.407 -7.940 0.494 21.903 hybrid contribution 1.162 1.902 -0.915 2.410 sum 21.569 -6.037 -0.421 22.402 Atomic orbital electron populations 1.69645 1.05557 1.28445 1.48262 1.24456 0.95013 0.98783 0.95743 0.86184 0.80345 0.81503 0.78871 1.19954 1.20780 1.18402 1.20762 0.76899 0.96623 1.52201 0.87647 1.83566 1.22591 1.25655 1.80653 1.19032 0.91543 0.85565 0.93184 1.21323 1.01167 0.91979 1.09149 1.20806 0.94299 0.96730 0.97838 1.20483 0.93594 0.96818 1.09044 1.19126 0.93452 0.92681 0.99892 1.20805 0.91158 1.00408 0.89786 1.60369 1.05514 1.51712 1.13518 1.22530 0.89798 1.01299 0.96371 1.21996 0.90634 0.90643 0.91895 0.86842 1.86707 1.79824 1.15796 1.52887 1.22900 0.95427 0.99970 0.85043 1.86575 1.25516 1.96111 1.28604 1.20014 0.92012 0.97081 1.11317 0.91078 0.84992 0.87146 0.87398 0.90535 0.94733 0.82689 0.90008 0.95038 0.78418 0.92660 0.93458 0.77577 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.64 13.96 55.48 0.77 -24.87 16 2 C 0.06 1.78 5.49 -17.52 -0.10 1.69 16 3 Si 0.91 21.80 28.62 -169.99 -4.86 16.93 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.39 -11.06 9.95 30.89 0.31 -10.76 16 8 H 0.11 3.06 5.44 -52.48 -0.29 2.77 16 9 O -0.22 -5.83 8.59 0.06 0.00 -5.83 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.22 -4.74 9.17 -39.39 -0.36 -5.10 16 12 C -0.08 -1.45 10.04 -39.61 -0.40 -1.84 16 13 C -0.18 -3.07 9.70 -39.54 -0.38 -3.45 16 14 C -0.05 -0.86 5.39 -104.65 -0.56 -1.43 16 15 C 0.11 1.39 5.81 -4.98 -0.03 1.37 16 16 N -0.68 -8.44 6.49 -115.06 -0.75 -9.18 16 17 C 0.03 0.27 5.39 -3.83 -0.02 0.25 16 18 C 0.11 1.03 3.52 -26.73 -0.09 0.94 16 19 H 0.11 1.29 8.14 -51.92 -0.42 0.87 16 20 O -0.55 -6.16 12.64 -40.06 -0.51 -6.67 16 21 C 0.05 0.32 6.68 37.16 0.25 0.57 16 22 O -0.56 -4.94 13.62 -40.06 -0.55 -5.48 16 23 C -0.18 -3.65 9.65 -39.40 -0.38 -4.03 16 24 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.13 3.03 5.64 -52.48 -0.30 2.73 16 26 H 0.11 1.74 8.06 -52.48 -0.42 1.31 16 27 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 29 H 0.03 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.35 4.79 8.11 -39.29 -0.32 4.47 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.37 2.79 9.05 45.56 0.41 3.20 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 36 H 0.38 1.44 9.12 45.56 0.42 1.86 16 37 H 0.11 2.08 8.06 -52.48 -0.42 1.65 16 LS Contribution 319.39 15.07 4.81 4.81 Total: -1.00 -32.73 319.39 -6.53 -39.27 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -3.43 Total: 9.39 kcal Atomic # 6 Polarization: -16.34 SS G_CDS: -2.03 Total: -18.37 kcal Atomic # 7 Polarization: -34.08 SS G_CDS: 0.03 Total: -34.05 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -1.05 Total: -17.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.73 -6.53 -39.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090282669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.618 kcal (2) G-P(sol) polarization free energy of solvation -32.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds